Wall clock time and date at job start Tue Mar 31 2020 12:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47565 * 2 1 4 4 N 1.46507 * 109.47056 * 239.99953 * 2 1 3 5 5 C 1.34781 * 119.99404 * 85.00442 * 4 2 1 6 6 O 1.21536 * 120.00267 * 359.97438 * 5 4 2 7 7 C 1.47937 * 119.99685 * 180.02562 * 5 4 2 8 8 C 1.39981 * 120.11809 * 179.97438 * 7 5 4 9 9 C 1.38410 * 117.96944 * 179.97438 * 8 7 5 10 10 C 1.39353 * 118.04131 * 0.02562 * 9 8 7 11 11 O 1.35510 * 120.03433 * 180.02562 * 10 9 8 12 12 N 1.32682 * 119.94002 * 359.97438 * 10 9 8 13 13 N 1.28360 * 122.19218 * 359.73363 * 12 10 9 14 14 C 1.53004 * 109.47223 * 120.00578 * 2 1 3 15 15 H 1.08999 * 109.52563 * 180.02562 * 14 2 1 16 16 C 1.53045 * 109.49244 * 300.15725 * 14 2 1 17 17 C 1.53347 * 109.60533 * 181.32344 * 16 14 2 18 18 C 1.53197 * 109.15217 * 298.71775 * 17 16 14 19 19 N 1.46926 * 108.89267 * 54.57515 * 18 17 16 20 20 C 1.36939 * 120.62800 * 126.34600 * 19 18 17 21 21 H 1.07998 * 119.99995 * 332.51498 * 20 19 18 22 22 C 1.38814 * 120.00009 * 152.52132 * 20 19 18 23 23 N 1.31608 * 120.00289 * 159.32820 * 22 20 19 24 24 Si 1.86806 * 119.99760 * 339.32554 * 22 20 19 25 25 H 1.48501 * 109.46946 * 92.94630 * 24 22 20 26 26 H 1.48496 * 109.46962 * 212.95100 * 24 22 20 27 27 H 1.48503 * 109.47163 * 332.94864 * 24 22 20 28 28 C 1.46925 * 118.73688 * 306.31945 * 19 18 17 29 29 H 1.08998 * 109.47023 * 60.00096 * 1 2 3 30 30 H 1.09005 * 109.47369 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47328 * 299.99970 * 1 2 3 32 32 H 0.96994 * 120.00507 * 265.00024 * 4 2 1 33 33 H 1.08000 * 121.01202 * 359.97438 * 8 7 5 34 34 H 1.08004 * 120.98224 * 180.02562 * 9 8 7 35 35 H 0.96703 * 114.00318 * 89.99785 * 11 10 9 36 36 H 1.08995 * 109.46432 * 301.34019 * 16 14 2 37 37 H 1.09001 * 109.45552 * 61.31559 * 16 14 2 38 38 H 1.08996 * 109.68665 * 178.75125 * 17 16 14 39 39 H 1.09010 * 109.47476 * 58.54973 * 17 16 14 40 40 H 1.08997 * 109.58041 * 294.71748 * 18 17 16 41 41 H 1.08998 * 109.58365 * 174.43673 * 18 17 16 42 42 H 0.97001 * 120.00278 * 180.02562 * 23 22 20 43 43 H 1.09005 * 109.58376 * 173.39756 * 28 19 18 44 44 H 1.08995 * 109.59177 * 293.68081 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1471 -0.0181 -2.3571 6 8 1.8576 1.1610 -2.4118 7 6 2.6396 -0.7156 -3.5652 8 6 2.7738 -0.0198 -4.7724 9 6 3.2391 -0.7157 -5.8746 10 6 3.5449 -2.0660 -5.7156 11 8 4.0040 -2.7860 -6.7678 12 7 3.3871 -2.6458 -4.5326 13 7 2.9611 -2.0023 -3.5070 14 6 2.0400 -0.7214 1.2492 15 1 3.1300 -0.7215 1.2503 16 6 1.5269 -0.0027 2.4992 17 6 2.0637 -0.7041 3.7528 18 6 1.5533 -2.1484 3.7781 19 7 1.9180 -2.8040 2.5148 20 6 2.6065 -3.9878 2.5166 21 1 3.2586 -4.2320 3.3421 22 6 2.4662 -4.8739 1.4573 23 7 3.3877 -5.7872 1.2368 24 14 0.9692 -4.7699 0.3447 25 1 1.2798 -3.9076 -0.8237 26 1 0.6073 -6.1308 -0.1266 27 1 -0.1696 -4.1886 1.1001 28 6 1.5296 -2.1657 1.2498 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.2490 -1.6318 -1.1527 33 1 2.5219 1.0282 -4.8416 34 1 3.3616 -0.2268 -6.8298 35 1 4.9668 -2.7816 -6.8573 36 1 1.8682 1.0324 2.4889 37 1 0.4372 -0.0257 2.5096 38 1 1.7171 -0.1802 4.6435 39 1 3.1535 -0.7039 3.7308 40 1 0.4692 -2.1507 3.8913 41 1 2.0090 -2.6824 4.6119 42 1 3.2899 -6.4062 0.4964 43 1 1.9718 -2.7098 0.4151 44 1 0.4437 -2.1718 1.1556 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025335838.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:06 Heat of formation + Delta-G solvation = 9.411961 kcal Electronic energy + Delta-G solvation = -27725.688134 eV Core-core repulsion = 23872.898814 eV Total energy + Delta-G solvation = -3852.789320 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.55707 -39.88159 -38.35836 -37.80389 -35.36144 -33.53100 -33.17981 -32.26943 -31.06389 -30.51936 -28.47257 -25.78550 -25.27451 -24.88210 -23.96196 -22.58656 -21.20929 -20.29940 -19.51349 -19.07283 -18.42476 -17.79260 -16.75523 -16.47755 -15.99236 -15.46244 -15.24765 -14.94265 -14.54081 -14.28925 -14.08791 -13.99128 -13.66587 -13.59009 -13.24768 -12.96361 -12.65313 -12.59951 -12.14077 -12.11192 -12.08799 -11.79694 -11.40650 -11.01919 -10.71313 -10.70181 -10.57369 -10.48316 -10.16057 -10.09325 -10.05901 -9.82433 -9.78621 -9.64509 -9.42952 -9.01691 -8.57030 -6.93375 -5.91697 -3.27594 0.05928 0.38630 2.37733 2.86922 3.04884 3.35375 3.37576 3.52060 3.54824 3.75661 4.22325 4.32210 4.55702 4.56939 4.60317 4.80581 5.09273 5.20223 5.21317 5.27429 5.42678 5.43106 5.53304 5.54574 5.59164 5.67263 5.82000 5.97468 6.03773 6.05740 6.14987 6.27531 6.34145 6.41224 6.52086 6.58603 6.60417 6.70937 6.74191 6.88985 6.99203 7.46898 7.99133 8.04300 8.25496 8.36423 8.97281 9.75268 10.12981 11.24236 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012667 B = 0.004664 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.865759 B = 6001.730437 C = 7642.452781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.146 3.854 3 H 0.089 0.911 4 N -0.697 5.697 5 C 0.578 3.422 6 O -0.535 6.535 7 C 0.013 3.987 8 C -0.048 4.048 9 C -0.142 4.142 10 C 0.272 3.728 11 O -0.472 6.472 12 N -0.249 5.249 13 N -0.173 5.173 14 C -0.115 4.115 15 H 0.081 0.919 16 C -0.102 4.102 17 C -0.135 4.135 18 C 0.147 3.853 19 N -0.604 5.604 20 C -0.264 4.264 21 H 0.085 0.915 22 C 0.027 3.973 23 N -0.905 5.905 24 Si 0.875 3.125 25 H -0.282 1.282 26 H -0.303 1.303 27 H -0.272 1.272 28 C 0.130 3.870 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.416 0.584 33 H 0.168 0.832 34 H 0.163 0.837 35 H 0.410 0.590 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.021 0.979 41 H 0.062 0.938 42 H 0.263 0.737 43 H 0.069 0.931 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.854 14.377 -11.290 18.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.041 3.959 3 H 0.107 0.893 4 N -0.349 5.349 5 C 0.360 3.640 6 O -0.412 6.412 7 C -0.134 4.134 8 C -0.077 4.077 9 C -0.172 4.172 10 C 0.087 3.913 11 O -0.278 6.278 12 N -0.102 5.102 13 N -0.023 5.023 14 C -0.136 4.136 15 H 0.099 0.901 16 C -0.140 4.140 17 C -0.174 4.174 18 C 0.021 3.979 19 N -0.327 5.327 20 C -0.392 4.392 21 H 0.103 0.897 22 C -0.172 4.172 23 N -0.547 5.547 24 Si 0.705 3.295 25 H -0.210 1.210 26 H -0.231 1.231 27 H -0.198 1.198 28 C 0.004 3.996 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.255 0.745 33 H 0.185 0.815 34 H 0.181 0.819 35 H 0.269 0.731 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.039 0.961 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.433 13.539 -10.655 17.288 hybrid contribution -0.248 0.667 -1.726 1.867 sum -1.681 14.206 -12.382 18.920 Atomic orbital electron populations 1.22296 0.95221 1.02796 1.02298 1.21161 0.94352 0.96941 0.83401 0.89263 1.46208 1.64238 1.15438 1.08968 1.17415 0.78276 0.85955 0.82349 1.90777 1.51120 1.14686 1.84580 1.23032 1.00789 0.93389 0.96199 1.22398 0.92295 1.02627 0.90425 1.22561 0.99847 0.93696 1.01117 1.21118 0.94336 0.88083 0.87760 1.84729 1.28489 1.72469 1.42161 1.73217 1.10822 1.30110 0.96084 1.73443 1.03923 1.05587 1.19336 1.21993 1.01549 0.97600 0.92453 0.90105 1.21489 1.00363 0.97878 0.94231 1.22055 1.01141 0.97942 0.96303 1.20945 0.96529 0.91171 0.89280 1.44301 1.66005 1.23149 0.99259 1.18913 1.19067 0.93010 1.08204 0.89702 1.25256 0.97667 0.96196 0.98108 1.69812 1.32668 1.21443 1.30806 0.87071 0.85672 0.76077 0.80679 1.20960 1.23092 1.19766 1.21458 0.97064 0.90697 0.90379 0.92485 0.91815 0.90923 0.74521 0.81477 0.81928 0.73071 0.92808 0.91986 0.92570 0.91976 0.96077 0.91983 0.92664 0.91304 0.95121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 8.79 37.16 0.33 -2.07 16 2 C 0.15 2.23 2.41 -67.93 -0.16 2.07 16 3 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 4 N -0.70 -11.47 4.99 -54.72 -0.27 -11.74 16 5 C 0.58 9.01 7.77 -12.29 -0.10 8.92 16 6 O -0.54 -8.78 16.05 5.33 0.09 -8.70 16 7 C 0.01 0.19 6.83 -82.84 -0.57 -0.38 16 8 C -0.05 -0.50 9.72 -38.87 -0.38 -0.88 16 9 C -0.14 -1.22 10.14 -39.10 -0.40 -1.62 16 10 C 0.27 3.06 7.85 -16.77 -0.13 2.93 16 11 O -0.47 -4.17 13.56 -18.22 -0.25 -4.42 16 12 N -0.25 -3.86 11.54 30.55 0.35 -3.51 16 13 N -0.17 -2.87 10.73 33.32 0.36 -2.51 16 14 C -0.12 -1.95 2.33 -90.50 -0.21 -2.16 16 15 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 16 C -0.10 -1.49 4.78 -26.53 -0.13 -1.62 16 17 C -0.14 -2.12 6.11 -26.45 -0.16 -2.29 16 18 C 0.15 2.83 6.50 -3.71 -0.02 2.80 16 19 N -0.60 -14.11 2.77 -172.32 -0.48 -14.59 16 20 C -0.26 -7.34 10.03 -15.06 -0.15 -7.49 16 21 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 22 C 0.03 0.78 5.23 -17.43 -0.09 0.69 16 23 N -0.90 -27.85 13.97 55.49 0.78 -27.08 16 24 Si 0.87 22.49 24.35 -169.99 -4.14 18.35 16 25 H -0.28 -6.91 6.62 56.52 0.37 -6.54 16 26 H -0.30 -8.04 7.11 56.52 0.40 -7.64 16 27 H -0.27 -6.87 6.64 56.52 0.38 -6.49 16 28 C 0.13 2.73 2.99 -3.71 -0.01 2.72 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.99 6.32 -51.93 -0.33 0.66 16 31 H 0.07 0.90 6.46 -51.93 -0.34 0.57 16 32 H 0.42 7.57 6.32 -40.82 -0.26 7.32 16 33 H 0.17 1.37 7.71 -52.49 -0.40 0.97 16 34 H 0.16 0.76 8.06 -52.48 -0.42 0.34 16 35 H 0.41 1.40 9.06 45.56 0.41 1.81 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.87 6.50 -51.93 -0.34 0.53 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 42 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 43 H 0.07 1.60 3.10 -51.93 -0.16 1.44 16 44 H 0.03 0.65 5.11 -51.93 -0.27 0.38 16 LS Contribution 349.16 15.07 5.26 5.26 Total: -1.00 -34.61 349.16 -5.54 -40.15 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -5.05 Total: 7.16 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -2.18 Total: 1.62 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: 0.73 Total: -59.43 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.16 Total: -13.11 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.14 Total: 18.35 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.61 -5.54 -40.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025335838.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.564 kcal (2) G-P(sol) polarization free energy of solvation -34.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds