Wall clock time and date at job start Tue Mar 31 2020 12:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47078 * 2 1 4 4 N 1.46500 * 109.47153 * 119.99532 * 2 1 3 5 5 C 1.34777 * 120.00336 * 275.00593 * 4 2 1 6 6 O 1.21518 * 119.99615 * 359.97438 * 5 4 2 7 7 C 1.48149 * 120.00235 * 179.97438 * 5 4 2 8 8 C 1.39892 * 121.12112 * 359.72419 * 7 5 4 9 9 N 1.31770 * 119.78568 * 179.71243 * 8 7 5 10 10 N 1.28273 * 122.41591 * 0.57794 * 9 8 7 11 11 C 1.32272 * 122.44092 * 359.70514 * 10 9 8 12 12 O 1.35696 * 120.08509 * 180.02562 * 11 10 9 13 13 C 1.39241 * 119.83693 * 359.97438 * 11 10 9 14 14 C 1.52995 * 109.47539 * 239.99811 * 2 1 3 15 15 H 1.08996 * 109.50090 * 184.93099 * 14 2 1 16 16 C 1.53045 * 109.49752 * 64.83841 * 14 2 1 17 17 C 1.53036 * 109.53803 * 178.68619 * 16 14 2 18 18 C 1.53192 * 109.31688 * 61.36424 * 17 16 14 19 19 N 1.46930 * 108.77346 * 305.36444 * 18 17 16 20 20 C 1.36934 * 120.63265 * 233.58452 * 19 18 17 21 21 H 1.08001 * 120.00131 * 151.84610 * 20 19 18 22 22 C 1.38809 * 119.99747 * 331.85112 * 20 19 18 23 23 N 1.31616 * 120.00301 * 343.06564 * 22 20 19 24 24 Si 1.86801 * 120.00020 * 163.06427 * 22 20 19 25 25 H 1.48503 * 109.47044 * 89.99496 * 24 22 20 26 26 H 1.48500 * 109.47652 * 209.99877 * 24 22 20 27 27 H 1.48497 * 109.47182 * 330.00040 * 24 22 20 28 28 C 1.46929 * 118.73745 * 53.60610 * 19 18 17 29 29 H 1.08996 * 109.47548 * 299.99696 * 1 2 3 30 30 H 1.09004 * 109.47078 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47085 * 60.00410 * 1 2 3 32 32 H 0.96998 * 119.99549 * 95.00211 * 4 2 1 33 33 H 1.08001 * 120.10659 * 359.97035 * 8 7 5 34 34 H 0.96701 * 114.00212 * 269.97578 * 12 11 10 35 35 H 1.07999 * 121.11944 * 179.97438 * 13 11 10 36 36 H 1.09005 * 109.46037 * 298.70377 * 16 14 2 37 37 H 1.08996 * 109.45899 * 58.66336 * 16 14 2 38 38 H 1.09005 * 109.49766 * 301.41085 * 17 16 14 39 39 H 1.08996 * 109.52319 * 181.33209 * 17 16 14 40 40 H 1.08996 * 109.58686 * 185.58243 * 18 17 16 41 41 H 1.08999 * 109.70329 * 65.21880 * 18 17 16 42 42 H 0.97004 * 120.00377 * 180.02562 * 23 22 20 43 43 H 1.09003 * 109.58749 * 186.60150 * 28 19 18 44 44 H 1.09005 * 109.58371 * 66.18146 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8583 1.1610 2.4116 7 6 2.6403 -0.7166 3.5670 8 6 2.9739 -2.0747 3.5323 9 7 3.4155 -2.6683 4.6227 10 7 3.5459 -2.0486 5.7382 11 6 3.2523 -0.7663 5.8761 12 8 3.4090 -0.1581 7.0790 13 6 2.7831 -0.0417 4.7836 14 6 2.0401 -0.7212 -1.2491 15 1 3.1264 -0.7986 -1.2065 16 6 1.6321 0.0665 -2.4962 17 6 2.1699 -0.6367 -3.7445 18 6 1.5610 -2.0393 -3.8380 19 7 1.8250 -2.7541 -2.5817 20 6 2.4277 -3.9837 -2.5920 21 1 3.0183 -4.3026 -1.7459 22 6 2.2796 -4.8200 -3.6899 23 7 1.3176 -4.5991 -4.5605 24 14 3.4458 -6.2591 -3.9318 25 1 2.8958 -7.4610 -3.2548 26 1 3.5980 -6.5346 -5.3830 27 1 4.7706 -5.9260 -3.3496 28 6 1.4297 -2.1248 -1.3143 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 2.2490 -1.6317 1.1527 33 1 2.8737 -2.6339 2.6138 34 1 2.6246 -0.1947 7.6433 35 1 2.5368 1.0060 4.8729 36 1 0.5448 0.1223 -2.5510 37 1 2.0448 1.0738 -2.4406 38 1 3.2552 -0.7149 -3.6789 39 1 1.8995 -0.0629 -4.6309 40 1 2.0148 -2.5801 -4.6684 41 1 0.4852 -1.9631 -3.9958 42 1 1.2139 -5.1838 -5.3275 43 1 1.7968 -2.7220 -0.4796 44 1 0.3431 -2.0534 -1.2651 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025450191.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:13 Heat of formation + Delta-G solvation = 3.032312 kcal Electronic energy + Delta-G solvation = -27061.452192 eV Core-core repulsion = 23208.386229 eV Total energy + Delta-G solvation = -3853.065962 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.71832 -40.02872 -38.22212 -37.98397 -35.42531 -33.87400 -33.07481 -31.90366 -30.98871 -30.52969 -28.23557 -26.08337 -25.37591 -24.89403 -23.82392 -22.32933 -21.38834 -20.49610 -19.52597 -18.72443 -18.48828 -17.61203 -16.86789 -16.61667 -16.08024 -15.96994 -15.24245 -14.95666 -14.64051 -14.46777 -14.11949 -13.95692 -13.81452 -13.54339 -13.19046 -12.71738 -12.66142 -12.46075 -12.36324 -11.91595 -11.77622 -11.75144 -11.06539 -10.99003 -10.72125 -10.69563 -10.63117 -10.55795 -10.27507 -10.21953 -10.17341 -9.95475 -9.84504 -9.69444 -9.47502 -9.19810 -8.51993 -6.73031 -5.85316 -3.28492 -0.12981 0.30224 2.36929 2.66754 2.92856 3.19917 3.33402 3.41281 3.42911 3.77169 3.94093 4.18461 4.36876 4.42901 4.55634 4.89176 5.08794 5.11730 5.27208 5.33161 5.34233 5.46649 5.47257 5.57795 5.60397 5.73571 5.87680 5.99491 6.11577 6.14369 6.20544 6.34712 6.43471 6.49709 6.62400 6.68012 6.78480 6.81639 6.87732 7.22378 7.33679 7.61294 7.72622 7.84224 8.16809 8.38017 9.14262 9.77672 10.33970 11.22880 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014498 B = 0.003272 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.876837 B = 8554.943963 C =10164.740090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.149 3.851 3 H 0.086 0.914 4 N -0.706 5.706 5 C 0.561 3.439 6 O -0.528 6.528 7 C -0.111 4.111 8 C 0.062 3.938 9 N -0.210 5.210 10 N -0.244 5.244 11 C 0.255 3.745 12 O -0.471 6.471 13 C -0.077 4.077 14 C -0.115 4.115 15 H 0.074 0.926 16 C -0.100 4.100 17 C -0.142 4.142 18 C 0.169 3.831 19 N -0.590 5.590 20 C -0.257 4.257 21 H 0.065 0.935 22 C 0.005 3.995 23 N -0.901 5.901 24 Si 0.901 3.099 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.279 1.279 28 C 0.150 3.850 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.404 0.596 33 H 0.184 0.816 34 H 0.408 0.592 35 H 0.168 0.832 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.086 0.914 41 H 0.018 0.982 42 H 0.254 0.746 43 H 0.046 0.954 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.549 10.427 14.742 18.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.045 3.955 3 H 0.104 0.896 4 N -0.357 5.357 5 C 0.345 3.655 6 O -0.404 6.404 7 C -0.126 4.126 8 C -0.103 4.103 9 N -0.053 5.053 10 N -0.096 5.096 11 C 0.069 3.931 12 O -0.276 6.276 13 C -0.108 4.108 14 C -0.136 4.136 15 H 0.092 0.908 16 C -0.138 4.138 17 C -0.182 4.182 18 C 0.044 3.956 19 N -0.312 5.312 20 C -0.386 4.386 21 H 0.082 0.918 22 C -0.194 4.194 23 N -0.545 5.545 24 Si 0.730 3.270 25 H -0.213 1.213 26 H -0.216 1.216 27 H -0.204 1.204 28 C 0.024 3.976 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.240 0.760 33 H 0.200 0.800 34 H 0.267 0.733 35 H 0.186 0.814 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.104 0.896 41 H 0.036 0.964 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 0.294 9.961 15.168 18.149 hybrid contribution -0.255 0.018 -0.670 0.717 sum 0.039 9.979 14.497 17.600 Atomic orbital electron populations 1.22272 0.94965 1.03018 1.02162 1.21171 0.94471 0.96850 0.82994 0.89580 1.46136 1.65609 1.14504 1.09459 1.17841 0.78447 0.86500 0.82740 1.90795 1.49942 1.15022 1.84665 1.21342 1.00525 0.95124 0.95580 1.24716 0.93445 0.92205 0.99962 1.73124 1.09060 1.28641 0.94507 1.72823 1.11462 1.07552 1.17809 1.20791 0.95093 0.89515 0.87707 1.84819 1.42460 1.74883 1.25452 1.22779 0.93595 1.03145 0.91276 1.21995 1.01070 0.98171 0.92328 0.90771 1.21416 1.00572 0.97205 0.94604 1.22177 1.00640 0.99586 0.95759 1.20793 0.96645 0.87998 0.90201 1.44008 1.69764 1.17641 0.99836 1.19133 1.23492 0.92118 1.03889 0.91760 1.25034 0.97309 0.97633 0.99427 1.70027 1.30137 1.39484 1.14813 0.86336 0.81003 0.82497 0.77159 1.21324 1.21559 1.20444 1.21003 0.96250 0.90208 0.90188 0.92818 0.91343 0.91038 0.75958 0.79954 0.73328 0.81400 0.92159 0.93472 0.92763 0.93154 0.89595 0.96392 0.93580 0.93547 0.95553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 8.76 37.16 0.33 -1.71 16 2 C 0.15 1.88 2.35 -67.93 -0.16 1.72 16 3 H 0.09 1.15 7.58 -51.93 -0.39 0.75 16 4 N -0.71 -8.00 4.97 -54.65 -0.27 -8.27 16 5 C 0.56 6.65 7.77 -12.19 -0.09 6.56 16 6 O -0.53 -7.70 16.15 5.35 0.09 -7.61 16 7 C -0.11 -1.14 5.92 -104.60 -0.62 -1.76 16 8 C 0.06 0.62 10.84 -16.96 -0.18 0.44 16 9 N -0.21 -2.55 11.48 30.79 0.35 -2.20 16 10 N -0.24 -2.96 11.50 30.49 0.35 -2.61 16 11 C 0.25 2.50 7.85 -16.99 -0.13 2.37 16 12 O -0.47 -3.57 13.57 -18.79 -0.26 -3.83 16 13 C -0.08 -0.72 9.72 -38.60 -0.38 -1.10 16 14 C -0.11 -1.71 2.27 -90.50 -0.21 -1.91 16 15 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 16 C -0.10 -1.51 4.89 -26.69 -0.13 -1.64 16 17 C -0.14 -2.53 6.08 -26.61 -0.16 -2.69 16 18 C 0.17 3.80 5.30 -3.71 -0.02 3.78 16 19 N -0.59 -13.62 2.99 -172.32 -0.52 -14.14 16 20 C -0.26 -6.62 9.58 -15.06 -0.14 -6.77 16 21 H 0.06 1.61 7.89 -52.49 -0.41 1.20 16 22 C 0.00 0.13 4.92 -17.43 -0.09 0.05 16 23 N -0.90 -25.20 11.20 55.49 0.62 -24.58 16 24 Si 0.90 20.93 29.59 -169.99 -5.03 15.90 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 28 C 0.15 2.71 5.26 -3.71 -0.02 2.69 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.87 6.23 -51.93 -0.32 0.54 16 31 H 0.07 0.85 6.59 -51.93 -0.34 0.50 16 32 H 0.40 4.05 5.42 -40.82 -0.22 3.83 16 33 H 0.18 1.40 6.53 -52.49 -0.34 1.05 16 34 H 0.41 0.87 9.06 45.56 0.41 1.29 16 35 H 0.17 1.37 7.79 -52.49 -0.41 0.96 16 36 H 0.06 0.89 6.63 -51.93 -0.34 0.55 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.09 2.20 6.06 -51.93 -0.31 1.88 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 43 H 0.05 0.78 6.75 -51.93 -0.35 0.43 16 44 H 0.03 0.49 6.06 -51.93 -0.31 0.18 16 LS Contribution 354.03 15.07 5.34 5.34 Total: -1.00 -32.37 354.03 -6.36 -38.73 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -5.03 Total: 3.23 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -2.01 Total: 0.03 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: 0.54 Total: -51.79 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: -0.17 Total: -11.44 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.37 -6.36 -38.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025450191.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.764 kcal (2) G-P(sol) polarization free energy of solvation -32.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds