Wall clock time and date at job start Tue Mar 31 2020 12:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47078 * 2 1 4 4 N 1.46500 * 109.47153 * 119.99532 * 2 1 3 5 5 C 1.34777 * 120.00336 * 275.00593 * 4 2 1 6 6 O 1.21518 * 119.99615 * 359.97438 * 5 4 2 7 7 C 1.48149 * 120.00235 * 179.97438 * 5 4 2 8 8 C 1.39892 * 121.12112 * 359.72419 * 7 5 4 9 9 N 1.31770 * 119.78568 * 179.71243 * 8 7 5 10 10 N 1.28273 * 122.41591 * 0.57794 * 9 8 7 11 11 C 1.32272 * 122.44092 * 359.70514 * 10 9 8 12 12 O 1.35696 * 120.08509 * 180.02562 * 11 10 9 13 13 C 1.39241 * 119.83693 * 359.97438 * 11 10 9 14 14 C 1.52995 * 109.47539 * 239.99811 * 2 1 3 15 15 H 1.08996 * 109.50090 * 184.93099 * 14 2 1 16 16 C 1.53045 * 109.49752 * 64.83841 * 14 2 1 17 17 C 1.53036 * 109.53803 * 178.68619 * 16 14 2 18 18 C 1.53192 * 109.31688 * 61.36424 * 17 16 14 19 19 N 1.46930 * 108.77346 * 305.36444 * 18 17 16 20 20 C 1.36934 * 120.63265 * 233.58452 * 19 18 17 21 21 H 1.08001 * 120.00131 * 151.84610 * 20 19 18 22 22 C 1.38809 * 119.99747 * 331.85112 * 20 19 18 23 23 N 1.31616 * 120.00301 * 343.06564 * 22 20 19 24 24 Si 1.86801 * 120.00020 * 163.06427 * 22 20 19 25 25 H 1.48503 * 109.47044 * 89.99496 * 24 22 20 26 26 H 1.48500 * 109.47652 * 209.99877 * 24 22 20 27 27 H 1.48497 * 109.47182 * 330.00040 * 24 22 20 28 28 C 1.46929 * 118.73745 * 53.60610 * 19 18 17 29 29 H 1.08996 * 109.47548 * 299.99696 * 1 2 3 30 30 H 1.09004 * 109.47078 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47085 * 60.00410 * 1 2 3 32 32 H 0.96998 * 119.99549 * 95.00211 * 4 2 1 33 33 H 1.08001 * 120.10659 * 359.97035 * 8 7 5 34 34 H 0.96701 * 114.00212 * 269.97578 * 12 11 10 35 35 H 1.07999 * 121.11944 * 179.97438 * 13 11 10 36 36 H 1.09005 * 109.46037 * 298.70377 * 16 14 2 37 37 H 1.08996 * 109.45899 * 58.66336 * 16 14 2 38 38 H 1.09005 * 109.49766 * 301.41085 * 17 16 14 39 39 H 1.08996 * 109.52319 * 181.33209 * 17 16 14 40 40 H 1.08996 * 109.58686 * 185.58243 * 18 17 16 41 41 H 1.08999 * 109.70329 * 65.21880 * 18 17 16 42 42 H 0.97004 * 120.00377 * 180.02562 * 23 22 20 43 43 H 1.09003 * 109.58749 * 186.60150 * 28 19 18 44 44 H 1.09005 * 109.58371 * 66.18146 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8583 1.1610 2.4116 7 6 2.6403 -0.7166 3.5670 8 6 2.9739 -2.0747 3.5323 9 7 3.4155 -2.6683 4.6227 10 7 3.5459 -2.0486 5.7382 11 6 3.2523 -0.7663 5.8761 12 8 3.4090 -0.1581 7.0790 13 6 2.7831 -0.0417 4.7836 14 6 2.0401 -0.7212 -1.2491 15 1 3.1264 -0.7986 -1.2065 16 6 1.6321 0.0665 -2.4962 17 6 2.1699 -0.6367 -3.7445 18 6 1.5610 -2.0393 -3.8380 19 7 1.8250 -2.7541 -2.5817 20 6 2.4277 -3.9837 -2.5920 21 1 3.0183 -4.3026 -1.7459 22 6 2.2796 -4.8200 -3.6899 23 7 1.3176 -4.5991 -4.5605 24 14 3.4458 -6.2591 -3.9318 25 1 2.8958 -7.4610 -3.2548 26 1 3.5980 -6.5346 -5.3830 27 1 4.7706 -5.9260 -3.3496 28 6 1.4297 -2.1248 -1.3143 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 2.2490 -1.6317 1.1527 33 1 2.8737 -2.6339 2.6138 34 1 2.6246 -0.1947 7.6433 35 1 2.5368 1.0060 4.8729 36 1 0.5448 0.1223 -2.5510 37 1 2.0448 1.0738 -2.4406 38 1 3.2552 -0.7149 -3.6789 39 1 1.8995 -0.0629 -4.6309 40 1 2.0148 -2.5801 -4.6684 41 1 0.4852 -1.9631 -3.9958 42 1 1.2139 -5.1838 -5.3275 43 1 1.7968 -2.7220 -0.4796 44 1 0.3431 -2.0534 -1.2651 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025450191.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:12 Heat of formation + Delta-G solvation = -22.592200 kcal Electronic energy + Delta-G solvation = -27062.563354 eV Core-core repulsion = 23208.386229 eV Total energy + Delta-G solvation = -3854.177124 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.52214 -41.03000 -39.50189 -38.67300 -36.76462 -34.91903 -34.42429 -32.81036 -32.29422 -32.09744 -29.50021 -27.19303 -26.95516 -25.66286 -25.00985 -23.87655 -22.58303 -21.67823 -20.46953 -19.87939 -19.36559 -18.65260 -18.31198 -17.48073 -17.00661 -16.95312 -16.73373 -16.19539 -15.83005 -15.66814 -15.41418 -15.05257 -14.94210 -14.67886 -14.58849 -14.06369 -13.94497 -13.71338 -13.32613 -13.27554 -13.01622 -12.75409 -12.67341 -12.56131 -12.27759 -12.02769 -11.94598 -11.75848 -11.57613 -11.50613 -11.45925 -11.19681 -11.03232 -10.97731 -10.63134 -10.48787 -10.20871 -8.61209 -7.83787 -5.28196 -0.93426 -0.41921 1.48226 1.50408 1.51081 1.59003 1.78243 2.19784 2.39693 2.53631 3.01671 3.14377 3.31778 3.37980 3.59473 3.65196 3.90572 3.96007 4.01732 4.06808 4.32088 4.37809 4.44290 4.49792 4.60763 4.67253 4.73103 4.79837 4.87891 4.90734 4.99382 5.06742 5.16530 5.22113 5.33220 5.38331 5.41559 5.52118 5.61952 5.71751 5.83413 6.30033 6.42521 6.43172 6.92144 7.19217 7.38413 7.91603 8.42449 9.22199 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014498 B = 0.003272 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.876837 B = 8554.943963 C =10164.740090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.159 3.841 3 H 0.089 0.911 4 N -0.701 5.701 5 C 0.568 3.432 6 O -0.554 6.554 7 C -0.114 4.114 8 C 0.068 3.932 9 N -0.236 5.236 10 N -0.272 5.272 11 C 0.264 3.736 12 O -0.474 6.474 13 C -0.068 4.068 14 C -0.100 4.100 15 H 0.069 0.931 16 C -0.097 4.097 17 C -0.132 4.132 18 C 0.174 3.826 19 N -0.609 5.609 20 C -0.258 4.258 21 H 0.071 0.929 22 C -0.050 4.050 23 N -0.935 5.935 24 Si 0.960 3.040 25 H -0.286 1.286 26 H -0.297 1.297 27 H -0.270 1.270 28 C 0.147 3.853 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.411 0.589 33 H 0.202 0.798 34 H 0.431 0.569 35 H 0.182 0.818 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.048 0.952 39 H 0.067 0.933 40 H 0.047 0.953 41 H -0.004 1.004 42 H 0.248 0.752 43 H 0.057 0.943 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.080 11.776 16.252 20.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.055 3.945 3 H 0.107 0.893 4 N -0.353 5.353 5 C 0.353 3.647 6 O -0.433 6.433 7 C -0.128 4.128 8 C -0.099 4.099 9 N -0.079 5.079 10 N -0.124 5.124 11 C 0.077 3.923 12 O -0.284 6.284 13 C -0.099 4.099 14 C -0.120 4.120 15 H 0.087 0.913 16 C -0.135 4.135 17 C -0.171 4.171 18 C 0.048 3.952 19 N -0.332 5.332 20 C -0.389 4.389 21 H 0.089 0.911 22 C -0.245 4.245 23 N -0.581 5.581 24 Si 0.788 3.212 25 H -0.212 1.212 26 H -0.224 1.224 27 H -0.195 1.195 28 C 0.022 3.978 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.248 0.752 33 H 0.219 0.781 34 H 0.294 0.706 35 H 0.200 0.800 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.014 0.986 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.763 11.308 16.733 20.210 hybrid contribution -0.436 -0.340 -1.054 1.190 sum 0.327 10.968 15.679 19.137 Atomic orbital electron populations 1.22227 0.94485 1.02699 1.02557 1.20973 0.94662 0.96564 0.82289 0.89314 1.46056 1.65324 1.14803 1.09095 1.17916 0.77736 0.86062 0.82968 1.90787 1.51229 1.16157 1.85081 1.21202 1.01180 0.95211 0.95255 1.24949 0.92586 0.92222 1.00099 1.73061 1.10272 1.29484 0.95042 1.72730 1.12651 1.08797 1.18232 1.20790 0.94099 0.88846 0.88552 1.84780 1.44186 1.74363 1.25024 1.22941 0.92564 1.03653 0.90766 1.21767 1.00450 0.96213 0.93594 0.91257 1.21410 1.00943 0.98182 0.92985 1.22008 0.99900 0.96947 0.98210 1.20605 0.95229 0.90251 0.89139 1.44267 1.69984 1.17334 1.01586 1.19518 1.22832 0.92838 1.03667 0.91124 1.25721 0.98806 1.00256 0.99753 1.70178 1.31970 1.40606 1.15349 0.85396 0.79571 0.79831 0.76370 1.21241 1.22409 1.19514 1.21178 0.96402 0.91925 0.88286 0.92617 0.91970 0.90492 0.75153 0.78094 0.70574 0.80040 0.91684 0.90631 0.93312 0.91455 0.93409 0.98582 0.94320 0.92484 0.95659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 8.76 71.98 0.63 -2.94 16 2 C 0.16 3.61 2.35 44.99 0.11 3.72 16 3 H 0.09 2.07 7.58 -2.38 -0.02 2.06 16 4 N -0.70 -14.21 4.97 -445.12 -2.21 -16.43 16 5 C 0.57 12.20 7.77 86.88 0.67 12.87 16 6 O -0.55 -14.91 16.15 -3.77 -0.06 -14.97 16 7 C -0.11 -2.12 5.92 -19.85 -0.12 -2.23 16 8 C 0.07 1.24 10.84 85.10 0.92 2.17 16 9 N -0.24 -5.49 11.48 -56.51 -0.65 -6.14 16 10 N -0.27 -6.30 11.50 -170.31 -1.96 -8.26 16 11 C 0.26 4.72 7.85 84.87 0.67 5.39 16 12 O -0.47 -6.18 13.57 -90.15 -1.22 -7.41 16 13 C -0.07 -1.14 9.72 22.90 0.22 -0.92 16 14 C -0.10 -2.74 2.27 -10.72 -0.02 -2.76 16 15 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 16 C -0.10 -2.68 4.89 30.62 0.15 -2.53 16 17 C -0.13 -4.51 6.08 30.67 0.19 -4.33 16 18 C 0.17 7.90 5.30 86.36 0.46 8.36 16 19 N -0.61 -28.03 2.99 -699.09 -2.09 -30.12 16 20 C -0.26 -13.31 9.58 84.03 0.81 -12.51 16 21 H 0.07 3.48 7.89 -2.91 -0.02 3.45 16 22 C -0.05 -2.69 4.92 84.86 0.42 -2.27 16 23 N -0.93 -53.86 11.20 21.65 0.24 -53.61 16 24 Si 0.96 43.54 29.59 68.60 2.03 45.57 16 25 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 26 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 27 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 28 C 0.15 5.12 5.26 86.36 0.45 5.58 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.45 6.23 -2.38 -0.01 1.44 16 31 H 0.08 1.62 6.59 -2.39 -0.02 1.61 16 32 H 0.41 7.25 5.42 -92.71 -0.50 6.75 16 33 H 0.20 2.68 6.53 -2.91 -0.02 2.66 16 34 H 0.43 0.83 9.06 -74.06 -0.67 0.16 16 35 H 0.18 2.51 7.79 -2.91 -0.02 2.49 16 36 H 0.06 1.76 6.63 -2.38 -0.02 1.75 16 37 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.05 2.53 6.06 -2.39 -0.01 2.51 16 41 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 42 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 43 H 0.06 1.83 6.75 -2.39 -0.02 1.81 16 44 H 0.03 0.91 6.06 -2.38 -0.01 0.89 16 Total: -1.00 -70.23 354.03 -0.49 -70.72 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -0.11 Total: 13.05 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 5.55 Total: 7.59 kcal Atomic # 7 Polarization: -107.88 SS G_CDS: -6.67 Total: -114.56 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -1.28 Total: -22.38 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -70.23 -0.49 -70.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025450191.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.130 kcal (2) G-P(sol) polarization free energy of solvation -70.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds