Wall clock time and date at job start Tue Mar 31 2020 12:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47237 * 2 1 4 4 N 1.46505 * 109.47085 * 119.99965 * 2 1 3 5 5 C 1.34774 * 119.99565 * 274.99822 * 4 2 1 6 6 O 1.21517 * 120.00420 * 0.02562 * 5 4 2 7 7 C 1.48149 * 119.99802 * 179.97438 * 5 4 2 8 8 C 1.39899 * 121.12435 * 0.02562 * 7 5 4 9 9 N 1.31756 * 119.79069 * 180.02562 * 8 7 5 10 10 N 1.28273 * 122.41756 * 359.97438 * 9 8 7 11 11 C 1.32276 * 122.43832 * 0.02562 * 10 9 8 12 12 O 1.35707 * 120.08079 * 180.02562 * 11 10 9 13 13 C 1.39239 * 119.83748 * 359.71616 * 11 10 9 14 14 C 1.53001 * 109.47394 * 239.99836 * 2 1 3 15 15 H 1.09004 * 109.49697 * 299.94065 * 14 2 1 16 16 C 1.53042 * 109.49915 * 59.99984 * 14 2 1 17 17 C 1.53033 * 109.52990 * 181.32692 * 16 14 2 18 18 C 1.53198 * 109.31059 * 298.61571 * 17 16 14 19 19 N 1.46927 * 108.76598 * 54.65512 * 18 17 16 20 20 C 1.36932 * 120.62756 * 126.36034 * 19 18 17 21 21 H 1.07997 * 119.99983 * 207.69257 * 20 19 18 22 22 C 1.38813 * 120.00221 * 27.70598 * 20 19 18 23 23 N 1.31616 * 120.00052 * 17.33741 * 22 20 19 24 24 Si 1.86800 * 119.99664 * 197.34958 * 22 20 19 25 25 H 1.48499 * 109.47289 * 89.99888 * 24 22 20 26 26 H 1.48500 * 109.46731 * 209.99371 * 24 22 20 27 27 H 1.48498 * 109.47492 * 329.99092 * 24 22 20 28 28 C 1.46923 * 118.73616 * 306.38393 * 19 18 17 29 29 H 1.08998 * 109.47412 * 300.00372 * 1 2 3 30 30 H 1.08999 * 109.46881 * 60.00379 * 1 2 3 31 31 H 1.09002 * 109.47237 * 179.97438 * 1 2 3 32 32 H 0.96992 * 120.00241 * 95.00106 * 4 2 1 33 33 H 1.08001 * 120.10377 * 0.02562 * 8 7 5 34 34 H 0.96703 * 114.00414 * 89.99853 * 12 11 10 35 35 H 1.07997 * 121.11731 * 180.30131 * 13 11 10 36 36 H 1.09005 * 109.45610 * 301.33947 * 16 14 2 37 37 H 1.09002 * 109.45727 * 61.30775 * 16 14 2 38 38 H 1.09007 * 109.49852 * 58.57994 * 17 16 14 39 39 H 1.09003 * 109.49974 * 178.67829 * 17 16 14 40 40 H 1.08993 * 109.59422 * 294.86488 * 18 17 16 41 41 H 1.09001 * 109.58112 * 174.43885 * 18 17 16 42 42 H 0.96997 * 119.99694 * 179.97438 * 23 22 20 43 43 H 1.09003 * 109.58599 * 293.82059 * 28 19 18 44 44 H 1.09003 * 109.58529 * 173.39896 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8576 1.1608 2.4118 7 6 2.6403 -0.7166 3.5669 8 6 2.9797 -2.0734 3.5308 9 7 3.4153 -2.6685 4.6226 10 7 3.5453 -2.0490 5.7383 11 6 3.2514 -0.7667 5.8762 12 8 3.4076 -0.1586 7.0794 13 6 2.7875 -0.0407 4.7824 14 6 2.0401 -0.7213 -1.2492 15 1 1.6778 -1.7494 -1.2491 16 6 1.5303 -0.0004 -2.4993 17 6 2.0126 -0.7403 -3.7490 18 6 3.5443 -0.7371 -3.7801 19 7 4.0439 -1.2972 -2.5170 20 6 4.9321 -2.3394 -2.5190 21 1 4.9608 -3.0260 -1.6859 22 6 5.7958 -2.5132 -3.5917 23 7 6.0119 -1.5218 -4.4300 24 14 6.6512 -4.1544 -3.8455 25 1 5.8078 -5.0246 -4.7038 26 1 7.9634 -3.9319 -4.5042 27 1 6.8625 -4.8111 -2.5306 28 6 3.5719 -0.7181 -1.2519 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 2.2490 -1.6317 1.1527 33 1 2.8850 -2.6311 2.6108 34 1 4.2826 0.2310 7.2126 35 1 2.5460 1.0083 4.8705 36 1 0.4405 0.0203 -2.4874 37 1 1.9128 1.0203 -2.5111 38 1 1.6512 -1.7684 -3.7253 39 1 1.6298 -0.2399 -4.6385 40 1 3.9054 0.2849 -3.8948 41 1 3.8940 -1.3461 -4.6137 42 1 6.6157 -1.6432 -5.1793 43 1 3.9354 0.3054 -1.1604 44 1 3.9400 -1.3147 -0.4172 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025450192.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:16 Heat of formation + Delta-G solvation = 0.785448 kcal Electronic energy + Delta-G solvation = -27085.512170 eV Core-core repulsion = 23232.348776 eV Total energy + Delta-G solvation = -3853.163393 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.69227 -39.98209 -38.12627 -37.93440 -35.47016 -33.85509 -33.06805 -31.87702 -30.97233 -30.52090 -28.60763 -26.08611 -25.20858 -24.86994 -23.49634 -22.04766 -21.36623 -20.63898 -19.63500 -19.05134 -18.41078 -17.65514 -16.83410 -16.60555 -16.08503 -15.95573 -15.32842 -14.87596 -14.47056 -14.29417 -14.24268 -13.84453 -13.71013 -13.47924 -13.28137 -12.79972 -12.66045 -12.54419 -12.35036 -11.89952 -11.76220 -11.68428 -11.20157 -11.02609 -10.76724 -10.66427 -10.64473 -10.48962 -10.25924 -10.22290 -10.19444 -9.97313 -9.83024 -9.64358 -9.52224 -9.15992 -8.51636 -6.73810 -5.84276 -3.27358 -0.10193 0.32713 2.40031 2.67935 2.95901 3.22890 3.34038 3.41340 3.42185 3.79243 3.96420 4.20431 4.39427 4.42735 4.57265 4.83654 5.11227 5.13589 5.25869 5.32358 5.36185 5.45248 5.48449 5.50341 5.65365 5.70518 5.88423 5.96605 6.00380 6.17574 6.24816 6.29482 6.36482 6.53108 6.62834 6.70216 6.79181 6.84564 6.88087 7.23461 7.34325 7.61988 7.73450 7.86824 8.18884 8.38742 9.15226 9.78642 10.35012 11.23916 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012856 B = 0.003471 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.397360 B = 8063.808025 C = 9721.840558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.090 0.910 4 N -0.705 5.705 5 C 0.562 3.438 6 O -0.526 6.526 7 C -0.111 4.111 8 C 0.063 3.937 9 N -0.211 5.211 10 N -0.244 5.244 11 C 0.256 3.744 12 O -0.471 6.471 13 C -0.077 4.077 14 C -0.112 4.112 15 H 0.074 0.926 16 C -0.101 4.101 17 C -0.142 4.142 18 C 0.168 3.832 19 N -0.591 5.591 20 C -0.256 4.256 21 H 0.065 0.935 22 C 0.004 3.996 23 N -0.901 5.901 24 Si 0.902 3.098 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.279 1.279 28 C 0.155 3.845 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.402 0.598 33 H 0.183 0.817 34 H 0.409 0.591 35 H 0.169 0.831 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.017 0.983 41 H 0.087 0.913 42 H 0.254 0.746 43 H 0.017 0.983 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.406 3.379 13.658 16.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.043 3.957 3 H 0.109 0.891 4 N -0.355 5.355 5 C 0.346 3.654 6 O -0.402 6.402 7 C -0.125 4.125 8 C -0.103 4.103 9 N -0.054 5.054 10 N -0.097 5.097 11 C 0.070 3.930 12 O -0.277 6.277 13 C -0.108 4.108 14 C -0.133 4.133 15 H 0.092 0.908 16 C -0.139 4.139 17 C -0.181 4.181 18 C 0.043 3.957 19 N -0.313 5.313 20 C -0.385 4.385 21 H 0.083 0.917 22 C -0.195 4.195 23 N -0.545 5.545 24 Si 0.731 3.269 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.204 1.204 28 C 0.028 3.972 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.238 0.762 33 H 0.199 0.801 34 H 0.268 0.732 35 H 0.186 0.814 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.035 0.965 41 H 0.105 0.895 42 H 0.064 0.936 43 H 0.035 0.965 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.503 2.750 14.396 17.468 hybrid contribution 0.587 0.225 -0.916 1.111 sum -8.917 2.975 13.480 16.434 Atomic orbital electron populations 1.22213 0.95256 1.02161 1.02443 1.21190 0.93754 0.97659 0.83091 0.89150 1.46029 1.65776 1.14324 1.09405 1.17815 0.78427 0.86491 0.82684 1.90800 1.49790 1.14984 1.84638 1.21336 1.00447 0.95038 0.95649 1.24676 0.93495 0.92178 0.99955 1.73102 1.09251 1.28743 0.94346 1.72817 1.11729 1.07908 1.17219 1.20789 0.96203 0.90080 0.85970 1.84808 1.38977 1.73143 1.30770 1.22786 0.94605 1.03021 0.90361 1.22011 0.99682 0.99325 0.92309 0.90795 1.21443 0.98786 0.99058 0.94585 1.22178 1.00861 0.99374 0.95711 1.20809 0.87445 0.97258 0.90226 1.44034 1.49789 1.38038 0.99432 1.19166 1.11457 1.02234 1.05688 0.91679 1.25033 0.97199 0.97461 0.99793 1.70037 1.37951 1.29339 1.17165 0.86305 0.78704 0.83809 0.78039 1.21403 1.21764 1.20386 1.20864 0.89772 0.96402 0.90182 0.92573 0.90928 0.92445 0.76182 0.80050 0.73243 0.81385 0.93034 0.92526 0.92719 0.93170 0.96484 0.89514 0.93586 0.96521 0.93178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.13 37.16 0.34 -1.43 16 2 C 0.15 1.84 2.16 -67.93 -0.15 1.69 16 3 H 0.09 1.29 7.58 -51.93 -0.39 0.89 16 4 N -0.70 -7.88 4.44 -54.65 -0.24 -8.12 16 5 C 0.56 6.80 7.77 -12.19 -0.09 6.71 16 6 O -0.53 -7.89 16.15 5.35 0.09 -7.80 16 7 C -0.11 -1.16 5.92 -104.60 -0.62 -1.78 16 8 C 0.06 0.63 10.84 -16.96 -0.18 0.44 16 9 N -0.21 -2.58 11.48 30.79 0.35 -2.23 16 10 N -0.24 -3.01 11.50 30.49 0.35 -2.66 16 11 C 0.26 2.59 7.85 -16.99 -0.13 2.46 16 12 O -0.47 -3.73 13.57 -18.83 -0.26 -3.99 16 13 C -0.08 -0.75 9.72 -38.61 -0.38 -1.12 16 14 C -0.11 -1.66 1.97 -90.50 -0.18 -1.83 16 15 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 16 C -0.10 -1.51 4.85 -26.69 -0.13 -1.64 16 17 C -0.14 -2.51 6.08 -26.61 -0.16 -2.67 16 18 C 0.17 3.83 5.31 -3.71 -0.02 3.81 16 19 N -0.59 -13.91 2.99 -172.32 -0.52 -14.43 16 20 C -0.26 -6.69 9.58 -15.06 -0.14 -6.83 16 21 H 0.07 1.65 7.89 -52.49 -0.41 1.24 16 22 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 23 N -0.90 -25.50 11.19 55.49 0.62 -24.88 16 24 Si 0.90 21.08 29.59 -169.99 -5.03 16.05 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 28 C 0.15 2.93 5.56 -3.71 -0.02 2.91 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.75 6.40 -51.93 -0.33 0.42 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.40 3.75 6.58 -40.82 -0.27 3.48 16 33 H 0.18 1.32 6.53 -52.49 -0.34 0.98 16 34 H 0.41 1.10 9.06 45.56 0.41 1.51 16 35 H 0.17 1.44 7.79 -52.49 -0.41 1.03 16 36 H 0.05 0.65 6.36 -51.93 -0.33 0.32 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 2.24 6.04 -51.93 -0.31 1.92 16 42 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.05 0.91 7.45 -51.93 -0.39 0.52 16 LS Contribution 359.00 15.07 5.41 5.41 Total: -1.00 -32.93 359.00 -6.47 -39.40 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -5.29 Total: 2.52 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -1.95 Total: 0.74 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: 0.57 Total: -52.33 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -0.17 Total: -11.79 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.93 -6.47 -39.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025450192.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.184 kcal (2) G-P(sol) polarization free energy of solvation -32.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds