Wall clock time and date at job start Tue Mar 31 2020 12:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46954 * 2 1 4 4 N 1.46501 * 109.46858 * 240.00811 * 2 1 3 5 5 C 1.34776 * 120.00249 * 84.99666 * 4 2 1 6 6 O 1.21516 * 120.00036 * 359.97438 * 5 4 2 7 7 C 1.48152 * 120.00253 * 179.97438 * 5 4 2 8 8 C 1.39894 * 121.12055 * 0.02562 * 7 5 4 9 9 N 1.31769 * 119.78759 * 179.97438 * 8 7 5 10 10 N 1.28270 * 122.41295 * 359.97438 * 9 8 7 11 11 C 1.32271 * 122.44502 * 0.02562 * 10 9 8 12 12 O 1.35701 * 120.08242 * 180.02562 * 11 10 9 13 13 C 1.39240 * 119.83320 * 359.71690 * 11 10 9 14 14 C 1.52992 * 109.47661 * 120.00559 * 2 1 3 15 15 H 1.09006 * 109.50035 * 180.02562 * 14 2 1 16 16 C 1.53040 * 109.52580 * 300.14540 * 14 2 1 17 17 C 1.53039 * 109.54198 * 181.32921 * 16 14 2 18 18 C 1.53622 * 109.24473 * 298.51455 * 17 16 14 19 19 N 1.46924 * 108.54399 * 54.84806 * 18 17 16 20 20 C 1.36946 * 120.62919 * 126.37114 * 19 18 17 21 21 H 1.08001 * 119.99879 * 207.53220 * 20 19 18 22 22 C 1.38814 * 119.99719 * 27.52961 * 20 19 18 23 23 N 1.31620 * 119.99709 * 25.84717 * 22 20 19 24 24 Si 1.86797 * 119.99712 * 205.56717 * 22 20 19 25 25 H 1.48493 * 109.47196 * 60.00574 * 24 22 20 26 26 H 1.48500 * 109.46719 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47268 * 299.99796 * 24 22 20 28 28 C 1.46928 * 118.74378 * 306.10142 * 19 18 17 29 29 H 1.08994 * 109.47590 * 59.99276 * 1 2 3 30 30 H 1.08999 * 109.46590 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46656 * 299.99178 * 1 2 3 32 32 H 0.97001 * 119.99882 * 264.99312 * 4 2 1 33 33 H 1.08007 * 120.10667 * 0.02671 * 8 7 5 34 34 H 0.96698 * 114.00077 * 90.00181 * 12 11 10 35 35 H 1.08004 * 121.11589 * 180.30304 * 13 11 10 36 36 H 1.08999 * 109.46221 * 301.35296 * 16 14 2 37 37 H 1.09003 * 109.45556 * 61.30999 * 16 14 2 38 38 H 1.09004 * 109.49499 * 58.58593 * 17 16 14 39 39 H 1.08994 * 109.49949 * 178.64805 * 17 16 14 40 40 H 1.09007 * 109.73672 * 295.11836 * 18 17 16 41 41 H 1.08997 * 109.67035 * 174.54572 * 18 17 16 42 42 H 0.96992 * 120.00366 * 4.05609 * 23 22 20 43 43 H 1.08992 * 109.58848 * 173.64203 * 28 19 18 44 44 H 1.09001 * 109.58293 * 293.92756 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1469 -0.0180 -2.3572 6 8 1.8575 1.1609 -2.4118 7 6 2.6412 -0.7161 -3.5669 8 6 2.9807 -2.0728 -3.5307 9 7 3.4172 -2.6676 -4.6225 10 7 3.5471 -2.0479 -5.7380 11 6 3.2532 -0.7657 -5.8759 12 8 3.4084 -0.1579 -7.0792 13 6 2.7781 -0.0427 -4.7849 14 6 2.0401 -0.7213 1.2491 15 1 3.1302 -0.7211 1.2497 16 6 1.5277 -0.0031 2.4996 17 6 2.0649 -0.7047 3.7491 18 6 1.5501 -2.1518 3.7780 19 7 1.9189 -2.8043 2.5143 20 6 2.6074 -3.9881 2.5153 21 1 3.2477 -4.2411 1.6832 22 6 2.4823 -4.8628 3.5859 23 7 1.3919 -4.8492 4.3229 24 14 3.8584 -6.0644 3.9759 25 1 5.1039 -5.3118 4.2713 26 1 3.4816 -6.8819 5.1569 27 1 4.0831 -6.9553 2.8092 28 6 1.5298 -2.1658 1.2496 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 2.2490 -1.6316 -1.1528 33 1 2.8845 -2.6310 -2.6111 34 1 2.6234 -0.1950 -7.6428 35 1 2.5271 1.0039 -4.8754 36 1 1.8690 1.0320 2.4894 37 1 0.4380 -0.0259 2.5105 38 1 3.1547 -0.7041 3.7265 39 1 1.7192 -0.1785 4.6388 40 1 0.4655 -2.1546 3.8877 41 1 2.0051 -2.6865 4.6117 42 1 0.6517 -4.2700 4.0832 43 1 1.9715 -2.7096 0.4146 44 1 0.4438 -2.1719 1.1561 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025450193.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:19 Heat of formation + Delta-G solvation = 0.893204 kcal Electronic energy + Delta-G solvation = -27132.272206 eV Core-core repulsion = 23279.113485 eV Total energy + Delta-G solvation = -3853.158721 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.73972 -40.08526 -38.33967 -38.01443 -35.60540 -33.92926 -33.24122 -31.92477 -31.01152 -30.48998 -28.30143 -26.12255 -25.18936 -24.91256 -23.90940 -22.45155 -21.37037 -20.55616 -19.54034 -18.77450 -18.53908 -17.68085 -17.38638 -16.71905 -16.14830 -16.02267 -15.28707 -14.78554 -14.72492 -14.38758 -14.16368 -13.97359 -13.80428 -13.63774 -13.45530 -12.94864 -12.75801 -12.66804 -12.30967 -12.13908 -11.79665 -11.75391 -11.14834 -10.93459 -10.75099 -10.71571 -10.65411 -10.46266 -10.29697 -10.23584 -10.09487 -10.01911 -9.93191 -9.80384 -9.33904 -9.25521 -8.41544 -6.94545 -6.15837 -3.29982 -0.15081 0.28504 2.34189 2.63428 2.90538 3.17764 3.45908 3.49254 3.66918 3.75308 3.91743 4.15498 4.34815 4.50554 4.54594 4.81099 5.00354 5.08510 5.18011 5.26011 5.31958 5.37529 5.44879 5.47839 5.50345 5.63506 5.76814 5.90135 5.98767 6.01292 6.09347 6.23568 6.34323 6.37783 6.42249 6.54680 6.61003 6.71821 6.80313 7.02763 7.13476 7.18041 7.80104 7.91944 8.15301 8.50533 9.03540 9.77148 10.21541 11.14523 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014364 B = 0.003316 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.884183 B = 8441.343997 C =10042.937605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.149 3.851 3 H 0.087 0.913 4 N -0.706 5.706 5 C 0.561 3.439 6 O -0.527 6.527 7 C -0.112 4.112 8 C 0.062 3.938 9 N -0.209 5.209 10 N -0.243 5.243 11 C 0.255 3.745 12 O -0.470 6.470 13 C -0.077 4.077 14 C -0.114 4.114 15 H 0.075 0.925 16 C -0.101 4.101 17 C -0.137 4.137 18 C 0.149 3.851 19 N -0.597 5.597 20 C -0.356 4.356 21 H 0.056 0.944 22 C -0.021 4.021 23 N -0.913 5.913 24 Si 1.063 2.937 25 H -0.293 1.293 26 H -0.285 1.285 27 H -0.292 1.292 28 C 0.153 3.847 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.404 0.596 33 H 0.183 0.817 34 H 0.408 0.592 35 H 0.169 0.831 36 H 0.050 0.950 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.017 0.983 41 H 0.078 0.922 42 H 0.269 0.731 43 H 0.047 0.953 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.880 11.116 -14.578 18.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.045 3.955 3 H 0.105 0.895 4 N -0.358 5.358 5 C 0.345 3.655 6 O -0.404 6.404 7 C -0.126 4.126 8 C -0.103 4.103 9 N -0.053 5.053 10 N -0.096 5.096 11 C 0.069 3.931 12 O -0.276 6.276 13 C -0.108 4.108 14 C -0.135 4.135 15 H 0.093 0.907 16 C -0.139 4.139 17 C -0.177 4.177 18 C 0.023 3.977 19 N -0.321 5.321 20 C -0.485 4.485 21 H 0.074 0.926 22 C -0.224 4.224 23 N -0.552 5.552 24 Si 0.893 3.107 25 H -0.220 1.220 26 H -0.211 1.211 27 H -0.219 1.219 28 C 0.026 3.974 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.241 0.759 33 H 0.200 0.800 34 H 0.267 0.733 35 H 0.186 0.814 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.035 0.965 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 0.505 9.541 -14.099 17.032 hybrid contribution -1.281 2.005 -0.696 2.479 sum -0.775 11.546 -14.795 18.783 Atomic orbital electron populations 1.22273 0.94994 1.02907 1.02252 1.21143 0.94427 0.96872 0.83014 0.89501 1.46151 1.65680 1.14551 1.09436 1.17847 0.78406 0.86487 0.82743 1.90794 1.49918 1.15024 1.84668 1.21328 1.00600 0.95151 0.95543 1.24714 0.93432 0.92186 0.99980 1.73129 1.09051 1.28610 0.94470 1.72824 1.11414 1.07531 1.17816 1.20791 0.95055 0.89519 0.87718 1.84820 1.42464 1.74881 1.25433 1.22781 0.93609 1.03118 0.91269 1.21975 1.01041 0.98092 0.92417 0.90677 1.21429 1.00336 0.97684 0.94416 1.22134 1.00816 0.98697 0.96006 1.21060 0.96243 0.89980 0.90402 1.44081 1.65905 1.22944 0.99125 1.19932 1.22696 0.96338 1.09489 0.92644 1.25836 1.00907 0.98724 0.96899 1.70797 1.03278 1.37778 1.43394 0.83542 0.75134 0.75769 0.76262 1.22035 1.21084 1.21888 1.20954 0.96364 0.89918 0.90125 0.92682 0.91535 0.91011 0.75894 0.80010 0.73323 0.81387 0.93146 0.92073 0.92359 0.92937 0.96509 0.90326 0.91978 0.93414 0.95846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 8.79 37.16 0.33 -1.68 16 2 C 0.15 1.89 2.41 -67.93 -0.16 1.72 16 3 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 4 N -0.71 -8.13 4.96 -54.65 -0.27 -8.40 16 5 C 0.56 6.72 7.77 -12.19 -0.09 6.63 16 6 O -0.53 -7.71 16.15 5.35 0.09 -7.62 16 7 C -0.11 -1.16 5.92 -104.60 -0.62 -1.78 16 8 C 0.06 0.64 10.84 -16.96 -0.18 0.46 16 9 N -0.21 -2.58 11.48 30.79 0.35 -2.23 16 10 N -0.24 -2.98 11.50 30.49 0.35 -2.63 16 11 C 0.26 2.52 7.85 -16.99 -0.13 2.39 16 12 O -0.47 -3.59 13.57 -18.81 -0.26 -3.84 16 13 C -0.08 -0.73 9.72 -38.61 -0.38 -1.10 16 14 C -0.11 -1.70 2.33 -90.50 -0.21 -1.91 16 15 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 16 C -0.10 -1.49 4.77 -26.69 -0.13 -1.61 16 17 C -0.14 -2.39 6.10 -26.39 -0.16 -2.55 16 18 C 0.15 3.26 4.72 -3.49 -0.02 3.25 16 19 N -0.60 -13.74 2.85 -172.05 -0.49 -14.23 16 20 C -0.36 -9.33 9.49 -15.05 -0.14 -9.47 16 21 H 0.06 1.45 7.95 -52.49 -0.42 1.03 16 22 C -0.02 -0.57 4.66 -17.43 -0.08 -0.65 16 23 N -0.91 -26.34 12.46 55.49 0.69 -25.65 16 24 Si 1.06 24.38 29.99 -169.99 -5.10 19.28 16 25 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 28 C 0.15 2.77 5.29 -3.71 -0.02 2.75 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.83 6.32 -51.93 -0.33 0.51 16 31 H 0.07 0.83 6.46 -51.93 -0.34 0.49 16 32 H 0.40 4.22 5.12 -40.82 -0.21 4.01 16 33 H 0.18 1.47 6.53 -52.48 -0.34 1.13 16 34 H 0.41 0.88 9.06 45.56 0.41 1.30 16 35 H 0.17 1.37 7.79 -52.48 -0.41 0.97 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.88 6.50 -51.93 -0.34 0.54 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.02 0.38 7.87 -51.93 -0.41 -0.03 16 41 H 0.08 1.97 6.31 -51.93 -0.33 1.64 16 42 H 0.27 7.80 6.69 -40.82 -0.27 7.52 16 43 H 0.05 0.82 6.52 -51.93 -0.34 0.49 16 44 H 0.02 0.43 6.19 -51.93 -0.32 0.11 16 LS Contribution 352.51 15.07 5.31 5.31 Total: -1.00 -33.01 352.51 -6.26 -39.27 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -4.94 Total: 4.33 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -2.00 Total: -3.58 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.63 Total: -53.14 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -0.17 Total: -11.46 kcal Atomic # 14 Polarization: 24.38 SS G_CDS: -5.10 Total: 19.28 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.01 -6.26 -39.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025450193.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.160 kcal (2) G-P(sol) polarization free energy of solvation -33.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds