Wall clock time and date at job start Tue Mar 31 2020 12:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46954 * 2 1 4 4 N 1.46501 * 109.46858 * 240.00811 * 2 1 3 5 5 C 1.34776 * 120.00249 * 84.99666 * 4 2 1 6 6 O 1.21516 * 120.00036 * 359.97438 * 5 4 2 7 7 C 1.48152 * 120.00253 * 179.97438 * 5 4 2 8 8 C 1.39894 * 121.12055 * 0.02562 * 7 5 4 9 9 N 1.31769 * 119.78759 * 179.97438 * 8 7 5 10 10 N 1.28270 * 122.41295 * 359.97438 * 9 8 7 11 11 C 1.32271 * 122.44502 * 0.02562 * 10 9 8 12 12 O 1.35701 * 120.08242 * 180.02562 * 11 10 9 13 13 C 1.39240 * 119.83320 * 359.71690 * 11 10 9 14 14 C 1.52992 * 109.47661 * 120.00559 * 2 1 3 15 15 H 1.09006 * 109.50035 * 180.02562 * 14 2 1 16 16 C 1.53040 * 109.52580 * 300.14540 * 14 2 1 17 17 C 1.53039 * 109.54198 * 181.32921 * 16 14 2 18 18 C 1.53622 * 109.24473 * 298.51455 * 17 16 14 19 19 N 1.46924 * 108.54399 * 54.84806 * 18 17 16 20 20 C 1.36946 * 120.62919 * 126.37114 * 19 18 17 21 21 H 1.08001 * 119.99879 * 207.53220 * 20 19 18 22 22 C 1.38814 * 119.99719 * 27.52961 * 20 19 18 23 23 N 1.31620 * 119.99709 * 25.84717 * 22 20 19 24 24 Si 1.86797 * 119.99712 * 205.56717 * 22 20 19 25 25 H 1.48493 * 109.47196 * 60.00574 * 24 22 20 26 26 H 1.48500 * 109.46719 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47268 * 299.99796 * 24 22 20 28 28 C 1.46928 * 118.74378 * 306.10142 * 19 18 17 29 29 H 1.08994 * 109.47590 * 59.99276 * 1 2 3 30 30 H 1.08999 * 109.46590 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46656 * 299.99178 * 1 2 3 32 32 H 0.97001 * 119.99882 * 264.99312 * 4 2 1 33 33 H 1.08007 * 120.10667 * 0.02671 * 8 7 5 34 34 H 0.96698 * 114.00077 * 90.00181 * 12 11 10 35 35 H 1.08004 * 121.11589 * 180.30304 * 13 11 10 36 36 H 1.08999 * 109.46221 * 301.35296 * 16 14 2 37 37 H 1.09003 * 109.45556 * 61.30999 * 16 14 2 38 38 H 1.09004 * 109.49499 * 58.58593 * 17 16 14 39 39 H 1.08994 * 109.49949 * 178.64805 * 17 16 14 40 40 H 1.09007 * 109.73672 * 295.11836 * 18 17 16 41 41 H 1.08997 * 109.67035 * 174.54572 * 18 17 16 42 42 H 0.96992 * 120.00366 * 4.05609 * 23 22 20 43 43 H 1.08992 * 109.58848 * 173.64203 * 28 19 18 44 44 H 1.09001 * 109.58293 * 293.92756 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1469 -0.0180 -2.3572 6 8 1.8575 1.1609 -2.4118 7 6 2.6412 -0.7161 -3.5669 8 6 2.9807 -2.0728 -3.5307 9 7 3.4172 -2.6676 -4.6225 10 7 3.5471 -2.0479 -5.7380 11 6 3.2532 -0.7657 -5.8759 12 8 3.4084 -0.1579 -7.0792 13 6 2.7781 -0.0427 -4.7849 14 6 2.0401 -0.7213 1.2491 15 1 3.1302 -0.7211 1.2497 16 6 1.5277 -0.0031 2.4996 17 6 2.0649 -0.7047 3.7491 18 6 1.5501 -2.1518 3.7780 19 7 1.9189 -2.8043 2.5143 20 6 2.6074 -3.9881 2.5153 21 1 3.2477 -4.2411 1.6832 22 6 2.4823 -4.8628 3.5859 23 7 1.3919 -4.8492 4.3229 24 14 3.8584 -6.0644 3.9759 25 1 5.1039 -5.3118 4.2713 26 1 3.4816 -6.8819 5.1569 27 1 4.0831 -6.9553 2.8092 28 6 1.5298 -2.1658 1.2496 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 2.2490 -1.6316 -1.1528 33 1 2.8845 -2.6310 -2.6111 34 1 2.6234 -0.1950 -7.6428 35 1 2.5271 1.0039 -4.8754 36 1 1.8690 1.0320 2.4894 37 1 0.4380 -0.0259 2.5105 38 1 3.1547 -0.7041 3.7265 39 1 1.7192 -0.1785 4.6388 40 1 0.4655 -2.1546 3.8877 41 1 2.0051 -2.6865 4.6117 42 1 0.6517 -4.2700 4.0832 43 1 1.9715 -2.7096 0.4146 44 1 0.4438 -2.1719 1.1561 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025450193.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:18 Heat of formation + Delta-G solvation = -25.253421 kcal Electronic energy + Delta-G solvation = -27133.406008 eV Core-core repulsion = 23279.113485 eV Total energy + Delta-G solvation = -3854.292523 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.55948 -41.10199 -39.64453 -38.69901 -36.97705 -35.04735 -34.50196 -32.82933 -32.22944 -32.14726 -29.56995 -27.11408 -26.91531 -25.69841 -25.09911 -23.97939 -22.58402 -21.74755 -20.51786 -19.94655 -19.47241 -19.24028 -18.40571 -17.52118 -17.09120 -16.95198 -16.33558 -16.20754 -16.05323 -15.56132 -15.42778 -15.39925 -15.01007 -14.91799 -14.63355 -14.37092 -13.92339 -13.70448 -13.56471 -13.33413 -12.91410 -12.73936 -12.61934 -12.58128 -12.10773 -11.92650 -11.91409 -11.73702 -11.67628 -11.55853 -11.54314 -11.33215 -11.05829 -11.00901 -10.66685 -10.40055 -10.27121 -8.86007 -8.22486 -5.34781 -0.96932 -0.45287 1.46134 1.60718 1.67015 1.73490 1.85205 2.16490 2.36158 2.67350 2.97749 3.10011 3.24593 3.33643 3.47980 3.61159 3.82877 3.88490 3.91594 3.97236 4.25176 4.26761 4.36104 4.36823 4.54863 4.56946 4.58843 4.73566 4.76555 4.78374 4.89540 4.94433 5.04902 5.11620 5.18666 5.25753 5.29436 5.37497 5.39851 5.59332 5.88573 6.23856 6.40507 6.43641 6.86270 7.10477 7.35266 7.82065 8.27474 9.04530 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014364 B = 0.003316 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.884183 B = 8441.343997 C =10042.937605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.159 3.841 3 H 0.090 0.910 4 N -0.703 5.703 5 C 0.568 3.432 6 O -0.552 6.552 7 C -0.115 4.115 8 C 0.067 3.933 9 N -0.236 5.236 10 N -0.271 5.271 11 C 0.265 3.735 12 O -0.473 6.473 13 C -0.067 4.067 14 C -0.099 4.099 15 H 0.066 0.934 16 C -0.098 4.098 17 C -0.127 4.127 18 C 0.152 3.848 19 N -0.616 5.616 20 C -0.354 4.354 21 H 0.055 0.945 22 C -0.074 4.074 23 N -0.944 5.944 24 Si 1.109 2.891 25 H -0.282 1.282 26 H -0.296 1.296 27 H -0.275 1.275 28 C 0.150 3.850 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.409 0.591 33 H 0.199 0.801 34 H 0.431 0.569 35 H 0.183 0.817 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.049 0.951 39 H 0.072 0.928 40 H 0.005 0.995 41 H 0.039 0.961 42 H 0.255 0.745 43 H 0.053 0.947 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.482 12.706 -15.893 20.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.055 3.945 3 H 0.108 0.892 4 N -0.355 5.355 5 C 0.354 3.646 6 O -0.431 6.431 7 C -0.129 4.129 8 C -0.099 4.099 9 N -0.078 5.078 10 N -0.123 5.123 11 C 0.078 3.922 12 O -0.283 6.283 13 C -0.098 4.098 14 C -0.120 4.120 15 H 0.085 0.915 16 C -0.136 4.136 17 C -0.166 4.166 18 C 0.026 3.974 19 N -0.340 5.340 20 C -0.484 4.484 21 H 0.073 0.927 22 C -0.271 4.271 23 N -0.586 5.586 24 Si 0.934 3.066 25 H -0.209 1.209 26 H -0.222 1.222 27 H -0.201 1.201 28 C 0.025 3.975 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.247 0.753 33 H 0.216 0.784 34 H 0.295 0.705 35 H 0.201 0.799 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.023 0.977 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.898 11.140 -15.470 19.085 hybrid contribution -1.437 1.579 -0.382 2.169 sum -0.540 12.719 -15.852 20.331 Atomic orbital electron populations 1.22230 0.94329 1.02593 1.02793 1.20976 0.94767 0.96578 0.82205 0.89158 1.46094 1.65433 1.14781 1.09179 1.17918 0.77713 0.86064 0.82951 1.90785 1.51164 1.16082 1.85065 1.21194 1.01257 0.95192 0.95287 1.24912 0.92706 0.92259 1.00067 1.73066 1.10262 1.29472 0.95006 1.72731 1.12613 1.08808 1.18178 1.20790 0.94003 0.88829 0.88584 1.84781 1.44200 1.74341 1.24971 1.22949 0.92520 1.03646 0.90696 1.21751 1.00349 0.95984 0.93908 0.91544 1.21433 1.00760 0.98751 0.92606 1.21998 1.00166 0.95893 0.98577 1.20934 0.95267 0.92287 0.88878 1.44322 1.66115 1.22559 1.01047 1.20211 1.22054 0.97076 1.09026 0.92727 1.27021 1.02021 1.00624 0.97447 1.70906 1.03968 1.39068 1.44685 0.82915 0.73168 0.74336 0.76134 1.20851 1.22213 1.20092 1.21123 0.96546 0.91692 0.88137 0.92496 0.92222 0.90156 0.75272 0.78403 0.70540 0.79926 0.90224 0.91318 0.93210 0.90935 0.97664 0.94273 0.93483 0.92849 0.95681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 8.79 71.98 0.63 -2.87 16 2 C 0.16 3.61 2.41 44.99 0.11 3.72 16 3 H 0.09 2.10 7.58 -2.38 -0.02 2.08 16 4 N -0.70 -14.71 4.96 -445.12 -2.21 -16.91 16 5 C 0.57 12.43 7.77 86.88 0.67 13.11 16 6 O -0.55 -14.91 16.15 -3.76 -0.06 -14.98 16 7 C -0.12 -2.19 5.92 -19.85 -0.12 -2.31 16 8 C 0.07 1.28 10.84 85.10 0.92 2.20 16 9 N -0.24 -5.62 11.48 -56.50 -0.65 -6.27 16 10 N -0.27 -6.37 11.50 -170.30 -1.96 -8.33 16 11 C 0.27 4.79 7.85 84.87 0.67 5.46 16 12 O -0.47 -6.21 13.57 -90.21 -1.22 -7.43 16 13 C -0.07 -1.14 9.72 22.90 0.22 -0.91 16 14 C -0.10 -2.74 2.33 -10.72 -0.02 -2.77 16 15 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 16 C -0.10 -2.62 4.77 30.62 0.15 -2.48 16 17 C -0.13 -4.26 6.10 30.82 0.19 -4.08 16 18 C 0.15 6.75 4.72 86.51 0.41 7.16 16 19 N -0.62 -28.42 2.85 -698.25 -1.99 -30.41 16 20 C -0.35 -18.67 9.49 84.03 0.80 -17.87 16 21 H 0.05 2.84 7.95 -2.91 -0.02 2.81 16 22 C -0.07 -4.09 4.66 84.86 0.40 -3.70 16 23 N -0.94 -56.10 12.46 21.65 0.27 -55.83 16 24 Si 1.11 49.65 29.99 68.60 2.06 51.70 16 25 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 26 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 27 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 28 C 0.15 5.27 5.29 86.36 0.46 5.73 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.38 6.32 -2.39 -0.02 1.36 16 31 H 0.08 1.61 6.46 -2.38 -0.02 1.59 16 32 H 0.41 7.76 5.12 -92.71 -0.47 7.28 16 33 H 0.20 2.91 6.53 -2.91 -0.02 2.89 16 34 H 0.43 0.84 9.06 -74.06 -0.67 0.17 16 35 H 0.18 2.53 7.79 -2.91 -0.02 2.51 16 36 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.07 1.78 6.50 -2.39 -0.02 1.76 16 38 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.01 0.25 7.87 -2.38 -0.02 0.23 16 41 H 0.04 2.02 6.31 -2.39 -0.02 2.01 16 42 H 0.26 15.37 6.69 -92.71 -0.62 14.75 16 43 H 0.05 1.78 6.52 -2.39 -0.02 1.76 16 44 H 0.03 0.89 6.19 -2.39 -0.01 0.88 16 Total: -1.00 -71.94 352.51 -0.22 -72.16 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.06 Total: 15.88 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: 5.48 Total: 0.41 kcal Atomic # 7 Polarization: -111.22 SS G_CDS: -6.53 Total: -117.75 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -1.29 Total: -22.41 kcal Atomic # 14 Polarization: 49.65 SS G_CDS: 2.06 Total: 51.70 kcal Total: -71.94 -0.22 -72.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025450193.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.909 kcal (2) G-P(sol) polarization free energy of solvation -71.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds