Wall clock time and date at job start Tue Mar 31 2020 12:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46769 * 2 1 4 4 N 1.46504 * 109.46874 * 240.00433 * 2 1 3 5 5 C 1.34774 * 119.99909 * 84.99943 * 4 2 1 6 6 O 1.21511 * 120.00474 * 359.97438 * 5 4 2 7 7 C 1.48153 * 119.99555 * 179.97438 * 5 4 2 8 8 C 1.39895 * 121.12536 * 359.72175 * 7 5 4 9 9 N 1.31763 * 119.78613 * 179.70517 * 8 7 5 10 10 N 1.28274 * 122.41773 * 0.59327 * 9 8 7 11 11 C 1.32280 * 122.43947 * 359.68888 * 10 9 8 12 12 O 1.35701 * 120.08063 * 180.02562 * 11 10 9 13 13 C 1.39234 * 119.83580 * 0.02562 * 11 10 9 14 14 C 1.52993 * 109.47292 * 120.00235 * 2 1 3 15 15 H 1.09002 * 109.52579 * 59.91950 * 14 2 1 16 16 C 1.53044 * 109.49924 * 299.83829 * 14 2 1 17 17 C 1.53066 * 109.66144 * 178.74759 * 16 14 2 18 18 C 1.53202 * 109.29419 * 61.15451 * 17 16 14 19 19 N 1.46921 * 108.89095 * 305.57926 * 18 17 16 20 20 C 1.36936 * 120.62896 * 233.55861 * 19 18 17 21 21 H 1.08007 * 119.99922 * 151.82366 * 20 19 18 22 22 C 1.38810 * 119.99947 * 331.81879 * 20 19 18 23 23 N 1.31613 * 120.00273 * 343.08601 * 22 20 19 24 24 Si 1.86803 * 119.99828 * 163.07892 * 22 20 19 25 25 H 1.48507 * 109.47194 * 60.00090 * 24 22 20 26 26 H 1.48502 * 109.47096 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47239 * 300.00059 * 24 22 20 28 28 C 1.46925 * 118.73959 * 53.53708 * 19 18 17 29 29 H 1.09002 * 109.47602 * 299.99463 * 1 2 3 30 30 H 1.08997 * 109.47418 * 59.99899 * 1 2 3 31 31 H 1.09003 * 109.46975 * 179.97438 * 1 2 3 32 32 H 0.96999 * 119.99460 * 264.99402 * 4 2 1 33 33 H 1.08001 * 120.10272 * 359.97208 * 8 7 5 34 34 H 0.96707 * 113.99973 * 269.97339 * 12 11 10 35 35 H 1.07998 * 121.11985 * 179.97438 * 13 11 10 36 36 H 1.09002 * 109.46193 * 298.70732 * 16 14 2 37 37 H 1.09008 * 109.45699 * 58.67496 * 16 14 2 38 38 H 1.09002 * 109.39095 * 301.28091 * 17 16 14 39 39 H 1.08998 * 109.62674 * 181.17131 * 17 16 14 40 40 H 1.08997 * 109.58441 * 185.72130 * 18 17 16 41 41 H 1.09001 * 109.58226 * 65.43722 * 18 17 16 42 42 H 0.96997 * 120.00271 * 180.02562 * 23 22 20 43 43 H 1.08996 * 109.59125 * 66.18147 * 28 19 18 44 44 H 1.09004 * 109.58469 * 186.60402 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1470 -0.0181 -2.3572 6 8 1.8576 1.1608 -2.4118 7 6 2.6413 -0.7164 -3.5667 8 6 2.9867 -2.0715 -3.5290 9 7 3.4180 -2.6677 -4.6220 10 7 3.5485 -2.0480 -5.7375 11 6 3.2542 -0.7658 -5.8756 12 8 3.4100 -0.1579 -7.0788 13 6 2.7842 -0.0414 -4.7833 14 6 2.0400 -0.7213 1.2491 15 1 1.6760 -1.7487 1.2507 16 6 1.5336 0.0020 2.4992 17 6 2.0159 -0.7346 3.7513 18 6 3.5477 -0.7380 3.7781 19 7 4.0443 -1.3004 2.5149 20 6 4.9301 -2.3446 2.5166 21 1 4.9508 -3.0367 1.6876 22 6 5.8017 -2.5136 3.5837 23 7 6.0200 -1.5201 4.4189 24 14 6.6646 -4.1513 3.8345 25 1 7.4932 -4.4620 2.6419 26 1 7.5344 -4.0737 5.0356 27 1 5.6517 -5.2204 4.0257 28 6 3.5720 -0.7215 1.2498 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2490 -1.6317 -1.1527 33 1 2.8959 -2.6282 -2.6080 34 1 4.2847 0.2323 -7.2120 35 1 2.5381 1.0063 -4.8726 36 1 1.9182 1.0219 2.5096 37 1 0.4438 0.0250 2.4889 38 1 1.6501 -1.7612 3.7306 39 1 1.6376 -0.2310 4.6409 40 1 3.8971 -1.3471 4.6117 41 1 3.9133 0.2824 3.8926 42 1 6.6292 -1.6381 5.1643 43 1 3.9376 0.3011 1.1568 44 1 3.9376 -1.3198 0.4152 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025450194.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:22 Heat of formation + Delta-G solvation = -25.428543 kcal Electronic energy + Delta-G solvation = -27086.683176 eV Core-core repulsion = 23232.383059 eV Total energy + Delta-G solvation = -3854.300117 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.51492 -40.98745 -39.42414 -38.67020 -36.80289 -34.92437 -34.42567 -32.81689 -32.39226 -31.96084 -29.90065 -27.25217 -26.74749 -25.65707 -24.74770 -23.59584 -22.53764 -21.72391 -20.88515 -20.02236 -19.31502 -18.71514 -18.32189 -17.46987 -17.05993 -16.90298 -16.76534 -16.22234 -15.87103 -15.44036 -15.28414 -15.02311 -14.93113 -14.72201 -14.56463 -14.11210 -14.00776 -13.72095 -13.31518 -13.25778 -13.00100 -12.73959 -12.60714 -12.56405 -12.29818 -12.19562 -11.97290 -11.76134 -11.63988 -11.51208 -11.45698 -11.19526 -11.04283 -10.97309 -10.62770 -10.50809 -10.19222 -8.65259 -7.85309 -5.31204 -0.93157 -0.41663 1.48726 1.50671 1.51454 1.56888 1.78508 2.20311 2.40602 2.52362 3.02371 3.15270 3.29719 3.38776 3.55500 3.64443 3.90614 3.96923 4.01933 4.07203 4.32700 4.37584 4.47057 4.52203 4.61085 4.67514 4.78229 4.79972 4.86532 4.90503 4.96994 5.06498 5.13458 5.23134 5.29995 5.35983 5.45049 5.51389 5.60124 5.69445 5.81441 6.31609 6.40805 6.41359 6.94915 7.16990 7.38352 7.88755 8.40325 9.20630 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012830 B = 0.003476 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.862301 B = 8053.843762 C = 9717.504535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.156 3.844 3 H 0.073 0.927 4 N -0.699 5.699 5 C 0.567 3.433 6 O -0.557 6.557 7 C -0.114 4.114 8 C 0.069 3.931 9 N -0.236 5.236 10 N -0.272 5.272 11 C 0.264 3.736 12 O -0.474 6.474 13 C -0.071 4.071 14 C -0.096 4.096 15 H 0.083 0.917 16 C -0.098 4.098 17 C -0.130 4.130 18 C 0.172 3.828 19 N -0.608 5.608 20 C -0.261 4.261 21 H 0.072 0.928 22 C -0.051 4.051 23 N -0.937 5.937 24 Si 0.964 3.036 25 H -0.276 1.276 26 H -0.299 1.299 27 H -0.276 1.276 28 C 0.152 3.848 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.413 0.587 33 H 0.207 0.793 34 H 0.431 0.569 35 H 0.180 0.820 36 H 0.050 0.950 37 H 0.088 0.912 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.049 0.951 41 H -0.011 1.011 42 H 0.248 0.752 43 H -0.002 1.002 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.118 2.753 -14.734 18.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.051 3.949 3 H 0.091 0.909 4 N -0.350 5.350 5 C 0.352 3.648 6 O -0.435 6.435 7 C -0.128 4.128 8 C -0.097 4.097 9 N -0.078 5.078 10 N -0.124 5.124 11 C 0.077 3.923 12 O -0.284 6.284 13 C -0.102 4.102 14 C -0.116 4.116 15 H 0.102 0.898 16 C -0.136 4.136 17 C -0.169 4.169 18 C 0.046 3.954 19 N -0.331 5.331 20 C -0.391 4.391 21 H 0.090 0.910 22 C -0.246 4.246 23 N -0.583 5.583 24 Si 0.792 3.208 25 H -0.202 1.202 26 H -0.225 1.225 27 H -0.202 1.202 28 C 0.027 3.973 29 H 0.101 0.899 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.251 0.749 33 H 0.223 0.777 34 H 0.294 0.706 35 H 0.197 0.803 36 H 0.069 0.931 37 H 0.107 0.893 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.007 0.993 42 H 0.057 0.943 43 H 0.016 0.984 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.218 2.104 -15.502 19.251 hybrid contribution 1.170 0.509 1.184 1.741 sum -10.048 2.613 -14.318 17.686 Atomic orbital electron populations 1.22154 0.93230 1.03206 1.02755 1.20992 0.95125 0.96377 0.82380 0.90887 1.45952 1.65365 1.14796 1.08859 1.17931 0.77779 0.86044 0.83074 1.90788 1.51288 1.16323 1.85136 1.21217 1.01101 0.95287 0.95229 1.24975 0.92415 0.92045 1.00253 1.73043 1.10442 1.29494 0.94835 1.72727 1.12885 1.09006 1.17757 1.20780 0.95416 0.89560 0.86568 1.84770 1.40952 1.72976 1.29676 1.22938 0.93743 1.03456 0.90050 1.21775 0.96060 1.00246 0.93537 0.89827 1.21446 1.00967 0.98154 0.92986 1.22006 0.96526 1.00255 0.98139 1.20629 0.91047 0.94648 0.89055 1.44285 1.49991 1.37781 1.01053 1.19522 1.10970 1.02629 1.06017 0.91002 1.25781 0.98474 1.00282 1.00071 1.70187 1.38760 1.31253 1.18117 0.85401 0.78130 0.80369 0.76909 1.20156 1.22508 1.20157 1.21009 0.92823 0.95014 0.88465 0.89925 0.93000 0.90992 0.74931 0.77685 0.70624 0.80288 0.93122 0.89315 0.92590 0.91388 0.93206 0.99329 0.94276 0.98402 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.14 71.98 0.66 -2.18 16 2 C 0.16 3.53 2.16 44.99 0.10 3.63 16 3 H 0.07 1.97 7.58 -2.39 -0.02 1.95 16 4 N -0.70 -14.08 4.44 -445.13 -1.97 -16.06 16 5 C 0.57 12.78 7.77 86.88 0.67 13.45 16 6 O -0.56 -16.02 16.15 -3.75 -0.06 -16.08 16 7 C -0.11 -2.21 5.92 -19.85 -0.12 -2.33 16 8 C 0.07 1.27 10.84 85.10 0.92 2.19 16 9 N -0.24 -5.50 11.48 -56.51 -0.65 -6.15 16 10 N -0.27 -6.45 11.50 -170.30 -1.96 -8.40 16 11 C 0.26 4.98 7.85 84.87 0.67 5.65 16 12 O -0.47 -6.70 13.57 -90.21 -1.22 -7.93 16 13 C -0.07 -1.28 9.72 22.90 0.22 -1.05 16 14 C -0.10 -2.60 1.98 -10.72 -0.02 -2.62 16 15 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 16 C -0.10 -2.67 4.85 30.63 0.15 -2.52 16 17 C -0.13 -4.42 6.09 30.68 0.19 -4.23 16 18 C 0.17 7.99 5.30 86.37 0.46 8.44 16 19 N -0.61 -28.80 2.99 -699.09 -2.09 -30.89 16 20 C -0.26 -13.68 9.58 84.03 0.81 -12.87 16 21 H 0.07 3.57 7.89 -2.91 -0.02 3.55 16 22 C -0.05 -2.76 4.92 84.86 0.42 -2.35 16 23 N -0.94 -54.83 11.20 21.65 0.24 -54.58 16 24 Si 0.96 43.70 29.59 68.60 2.03 45.73 16 25 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 26 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 27 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 28 C 0.15 5.68 5.55 86.36 0.48 6.16 16 29 H 0.08 1.36 6.41 -2.39 -0.02 1.34 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.41 6.58 6.57 -92.71 -0.61 5.97 16 33 H 0.21 2.51 6.53 -2.91 -0.02 2.49 16 34 H 0.43 1.50 9.06 -74.05 -0.67 0.83 16 35 H 0.18 2.79 7.79 -2.91 -0.02 2.76 16 36 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.09 1.85 6.37 -2.38 -0.02 1.84 16 38 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.05 2.66 6.06 -2.39 -0.01 2.64 16 41 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 42 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 43 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 44 H 0.06 2.00 7.44 -2.38 -0.02 1.99 16 Total: -1.00 -72.77 359.02 -0.32 -73.09 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -0.23 Total: 11.91 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 5.60 Total: 9.37 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -6.43 Total: -116.09 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -1.28 Total: -24.01 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -72.77 -0.32 -73.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025450194.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.665 kcal (2) G-P(sol) polarization free energy of solvation -72.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds