Wall clock time and date at job start Tue Mar 31 2020 12:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47217 * 2 1 4 4 N 1.46497 * 109.47491 * 120.00631 * 2 1 3 5 5 C 1.34778 * 119.99720 * 275.00033 * 4 2 1 6 6 O 1.21591 * 120.00065 * 359.97438 * 5 4 2 7 7 C 1.47531 * 120.00088 * 179.97438 * 5 4 2 8 8 C 1.39810 * 120.97790 * 359.71837 * 7 5 4 9 9 N 1.32193 * 118.97546 * 179.71821 * 8 7 5 10 10 C 1.31932 * 121.14233 * 0.56876 * 9 8 7 11 11 N 1.31729 * 122.19954 * 359.70919 * 10 9 8 12 12 C 1.32777 * 120.86649 * 359.97438 * 11 10 9 13 13 O 1.35285 * 120.60907 * 180.02562 * 12 11 10 14 14 C 1.53005 * 109.46920 * 240.00579 * 2 1 3 15 15 H 1.08996 * 109.52516 * 185.08370 * 14 2 1 16 16 C 1.53037 * 109.49972 * 64.99815 * 14 2 1 17 17 C 1.53035 * 109.53849 * 178.68635 * 16 14 2 18 18 C 1.53188 * 109.34186 * 61.34486 * 17 16 14 19 19 N 1.46925 * 108.77686 * 305.41782 * 18 17 16 20 20 C 1.36937 * 120.60955 * 233.53214 * 19 18 17 21 21 H 1.08002 * 120.00441 * 151.83532 * 20 19 18 22 22 C 1.38815 * 119.99757 * 331.83938 * 20 19 18 23 23 N 1.31621 * 119.99968 * 343.06641 * 22 20 19 24 24 Si 1.86804 * 119.99912 * 163.06079 * 22 20 19 25 25 H 1.48496 * 109.47076 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47114 * 120.00402 * 24 22 20 27 27 H 1.48500 * 109.47032 * 239.99963 * 24 22 20 28 28 C 1.46926 * 118.76387 * 53.55258 * 19 18 17 29 29 H 1.08999 * 109.47041 * 299.99684 * 1 2 3 30 30 H 1.09001 * 109.47390 * 59.99507 * 1 2 3 31 31 H 1.09000 * 109.47556 * 179.97438 * 1 2 3 32 32 H 0.97003 * 120.00400 * 94.99078 * 4 2 1 33 33 H 1.07993 * 120.51053 * 0.02562 * 8 7 5 34 34 H 1.08004 * 118.90358 * 179.72445 * 10 9 8 35 35 H 0.96697 * 113.99863 * 269.97448 * 13 12 11 36 36 H 1.08999 * 109.45819 * 58.66652 * 16 14 2 37 37 H 1.08999 * 109.44883 * 298.69958 * 16 14 2 38 38 H 1.08999 * 109.50134 * 181.32074 * 17 16 14 39 39 H 1.08999 * 109.50086 * 301.38225 * 17 16 14 40 40 H 1.09006 * 109.58559 * 65.17416 * 18 17 16 41 41 H 1.09004 * 109.59042 * 185.59287 * 18 17 16 42 42 H 0.97000 * 119.99851 * 180.02562 * 23 22 20 43 43 H 1.09001 * 109.58815 * 186.62786 * 28 19 18 44 44 H 1.08998 * 109.58822 * 66.20234 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1471 -0.0184 2.3571 6 8 1.8583 1.1614 2.4116 7 6 2.6384 -0.7141 3.5617 8 6 2.9708 -2.0715 3.5236 9 7 3.4126 -2.6539 4.6250 10 6 3.5321 -1.9794 5.7526 11 7 3.2269 -0.7011 5.8416 12 6 2.7812 -0.0320 4.7849 13 8 2.4697 1.2809 4.8820 14 6 2.0399 -0.7212 -1.2494 15 1 3.1261 -0.8012 -1.2060 16 6 1.6354 0.0688 -2.4961 17 6 2.1731 -0.6344 -3.7444 18 6 1.5617 -2.0357 -3.8404 19 7 1.8218 -2.7522 -2.5843 20 6 2.4212 -3.9833 -2.5950 21 1 3.0099 -4.3048 -1.7485 22 6 2.2723 -4.8182 -3.6940 23 7 1.3120 -4.5937 -4.5657 24 14 3.4350 -6.2601 -3.9359 25 1 4.4200 -6.2934 -2.8251 26 1 2.6584 -7.5257 -3.9478 27 1 4.1514 -6.1070 -5.2277 28 6 1.4263 -2.1233 -1.3167 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 2.2490 -1.6319 1.1525 33 1 2.8730 -2.6344 2.6071 34 1 3.8925 -2.4924 6.6320 35 1 1.5492 1.4498 5.1252 36 1 2.0505 1.0750 -2.4389 37 1 0.5484 0.1270 -2.5520 38 1 1.9047 -0.0589 -4.6303 39 1 3.2581 -0.7148 -3.6779 40 1 0.4862 -1.9551 -3.9987 41 1 2.0158 -2.5765 -4.6708 42 1 1.2077 -5.1773 -5.3334 43 1 1.7909 -2.7222 -0.4822 44 1 0.3398 -2.0493 -1.2688 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025453440.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:26 Heat of formation + Delta-G solvation = -6.204000 kcal Electronic energy + Delta-G solvation = -27371.432166 eV Core-core repulsion = 23517.965688 eV Total energy + Delta-G solvation = -3853.466479 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.66298 -39.77076 -38.19960 -37.75622 -35.26230 -33.90581 -33.10793 -32.21777 -30.68173 -30.50952 -28.15632 -25.80752 -25.35863 -24.62424 -23.74553 -22.29412 -21.20413 -20.36655 -19.57011 -18.81733 -18.30216 -17.80224 -16.84344 -16.64112 -15.79665 -15.54733 -14.97933 -14.81353 -14.59539 -14.43759 -14.19373 -14.07701 -13.81756 -13.50104 -13.15158 -12.63774 -12.51809 -12.41446 -12.32505 -11.87315 -11.71442 -11.59168 -11.05320 -11.04338 -10.97870 -10.64270 -10.52267 -10.22828 -10.18579 -10.00356 -9.98174 -9.90417 -9.75483 -9.64937 -9.44687 -9.05504 -8.51494 -6.71714 -5.84366 -3.27540 0.02468 0.52034 2.63797 2.84912 3.04046 3.33044 3.40906 3.41686 3.42940 3.64925 3.91755 4.37976 4.43097 4.48998 4.82977 4.99781 5.06589 5.15521 5.33505 5.35868 5.51134 5.62237 5.64609 5.71986 5.78679 5.93705 6.05142 6.15941 6.18535 6.27004 6.38404 6.40675 6.50235 6.54475 6.65370 6.71557 6.81637 6.91307 7.05647 7.35146 7.38125 7.56223 7.62646 7.73717 8.05022 8.39053 9.15343 9.78811 10.35289 11.23747 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014687 B = 0.003478 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.935650 B = 8048.152952 C = 9630.949314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.151 3.849 3 H 0.085 0.915 4 N -0.713 5.713 5 C 0.567 3.433 6 O -0.522 6.522 7 C -0.259 4.259 8 C 0.200 3.800 9 N -0.526 5.526 10 C 0.338 3.662 11 N -0.545 5.545 12 C 0.417 3.583 13 O -0.454 6.454 14 C -0.114 4.114 15 H 0.073 0.927 16 C -0.100 4.100 17 C -0.143 4.143 18 C 0.170 3.830 19 N -0.591 5.591 20 C -0.255 4.255 21 H 0.065 0.935 22 C 0.004 3.996 23 N -0.900 5.900 24 Si 0.900 3.100 25 H -0.277 1.277 26 H -0.290 1.290 27 H -0.289 1.289 28 C 0.151 3.849 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.400 0.600 33 H 0.178 0.822 34 H 0.207 0.793 35 H 0.413 0.587 36 H 0.046 0.954 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.018 0.982 41 H 0.086 0.914 42 H 0.253 0.747 43 H 0.046 0.954 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.171 8.045 15.198 17.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.047 3.953 3 H 0.103 0.897 4 N -0.365 5.365 5 C 0.351 3.649 6 O -0.399 6.399 7 C -0.268 4.268 8 C 0.034 3.966 9 N -0.241 5.241 10 C 0.051 3.949 11 N -0.270 5.270 12 C 0.229 3.771 13 O -0.262 6.262 14 C -0.135 4.135 15 H 0.091 0.909 16 C -0.138 4.138 17 C -0.182 4.182 18 C 0.044 3.956 19 N -0.313 5.313 20 C -0.385 4.385 21 H 0.083 0.917 22 C -0.194 4.194 23 N -0.544 5.544 24 Si 0.730 3.270 25 H -0.202 1.202 26 H -0.217 1.217 27 H -0.216 1.216 28 C 0.024 3.976 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.236 0.764 33 H 0.195 0.805 34 H 0.223 0.777 35 H 0.275 0.725 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.036 0.964 41 H 0.104 0.896 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 0.784 8.494 15.703 17.870 hybrid contribution -0.009 -0.851 -0.805 1.171 sum 0.774 7.643 14.898 16.762 Atomic orbital electron populations 1.22263 0.95181 1.02837 1.02023 1.21098 0.94284 0.96826 0.83117 0.89721 1.46105 1.66532 1.14261 1.09567 1.17560 0.78331 0.86498 0.82479 1.90812 1.49738 1.14741 1.84615 1.22122 1.10293 0.96825 0.97538 1.23609 0.85852 0.89968 0.97218 1.68459 1.15619 1.40238 0.99809 1.25105 0.88526 0.85543 0.95684 1.68155 1.15749 1.10548 1.32578 1.19477 0.86763 0.84218 0.86687 1.84646 1.34564 1.16047 1.90966 1.21984 1.01006 0.98095 0.92438 0.90874 1.21413 1.00547 0.97220 0.94629 1.22180 1.00626 0.99588 0.95791 1.20790 0.96613 0.87994 0.90179 1.44021 1.69922 1.17464 0.99905 1.19189 1.23528 0.92003 1.03775 0.91730 1.25036 0.97330 0.97630 0.99446 1.70042 1.30199 1.39491 1.14713 0.86263 0.80641 0.82259 0.77836 1.20231 1.21701 1.21555 1.20999 0.96215 0.90273 0.90078 0.92887 0.91206 0.91488 0.76379 0.80483 0.77696 0.72510 0.93480 0.92191 0.93190 0.92797 0.96430 0.89608 0.93649 0.93593 0.95577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 8.76 37.16 0.33 -1.77 16 2 C 0.15 2.00 2.35 -67.93 -0.16 1.84 16 3 H 0.08 1.20 7.58 -51.93 -0.39 0.81 16 4 N -0.71 -8.58 4.97 -54.85 -0.27 -8.86 16 5 C 0.57 7.28 7.74 -12.47 -0.10 7.18 16 6 O -0.52 -8.09 14.98 -15.86 -0.24 -8.33 16 7 C -0.26 -2.89 5.92 -104.56 -0.62 -3.51 16 8 C 0.20 1.97 10.81 -16.81 -0.18 1.79 16 9 N -0.53 -5.31 10.42 -14.29 -0.15 -5.46 16 10 C 0.34 3.01 12.27 -92.09 -1.13 1.88 16 11 N -0.55 -5.83 10.45 -14.32 -0.15 -5.98 16 12 C 0.42 4.76 7.85 -16.19 -0.13 4.63 16 13 O -0.45 -5.03 11.81 -38.69 -0.46 -5.49 16 14 C -0.11 -1.76 2.27 -90.49 -0.21 -1.97 16 15 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 16 C -0.10 -1.55 4.89 -26.69 -0.13 -1.68 16 17 C -0.14 -2.58 6.08 -26.62 -0.16 -2.74 16 18 C 0.17 3.86 5.30 -3.71 -0.02 3.84 16 19 N -0.59 -13.78 2.99 -172.31 -0.52 -14.30 16 20 C -0.26 -6.63 9.58 -15.06 -0.14 -6.77 16 21 H 0.06 1.63 7.89 -52.49 -0.41 1.22 16 22 C 0.00 0.12 4.92 -17.43 -0.09 0.03 16 23 N -0.90 -25.28 11.20 55.49 0.62 -24.66 16 24 Si 0.90 20.97 29.59 -169.99 -5.03 15.94 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 28 C 0.15 2.78 5.26 -3.71 -0.02 2.76 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.86 6.60 -51.93 -0.34 0.52 16 31 H 0.07 0.88 6.23 -51.93 -0.32 0.56 16 32 H 0.40 4.28 5.41 -40.82 -0.22 4.06 16 33 H 0.18 1.38 6.53 -52.49 -0.34 1.04 16 34 H 0.21 1.03 8.06 -52.48 -0.42 0.61 16 35 H 0.41 2.73 9.06 45.56 0.41 3.14 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.92 6.63 -51.93 -0.34 0.57 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.09 2.21 6.06 -51.93 -0.31 1.90 16 42 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 43 H 0.05 0.79 6.75 -51.93 -0.35 0.44 16 44 H 0.03 0.50 6.06 -51.93 -0.31 0.18 16 LS Contribution 351.72 15.07 5.30 5.30 Total: -1.00 -32.52 351.72 -8.69 -41.21 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -5.04 Total: 5.12 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: -2.75 Total: 5.51 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: -0.47 Total: -59.26 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.69 Total: -13.82 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.52 -8.69 -41.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025453440.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.002 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds