Wall clock time and date at job start Tue Mar 31 2020 12:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47217 * 2 1 4 4 N 1.46497 * 109.47491 * 120.00631 * 2 1 3 5 5 C 1.34778 * 119.99720 * 275.00033 * 4 2 1 6 6 O 1.21591 * 120.00065 * 359.97438 * 5 4 2 7 7 C 1.47531 * 120.00088 * 179.97438 * 5 4 2 8 8 C 1.39810 * 120.97790 * 359.71837 * 7 5 4 9 9 N 1.32193 * 118.97546 * 179.71821 * 8 7 5 10 10 C 1.31932 * 121.14233 * 0.56876 * 9 8 7 11 11 N 1.31729 * 122.19954 * 359.70919 * 10 9 8 12 12 C 1.32777 * 120.86649 * 359.97438 * 11 10 9 13 13 O 1.35285 * 120.60907 * 180.02562 * 12 11 10 14 14 C 1.53005 * 109.46920 * 240.00579 * 2 1 3 15 15 H 1.08996 * 109.52516 * 185.08370 * 14 2 1 16 16 C 1.53037 * 109.49972 * 64.99815 * 14 2 1 17 17 C 1.53035 * 109.53849 * 178.68635 * 16 14 2 18 18 C 1.53188 * 109.34186 * 61.34486 * 17 16 14 19 19 N 1.46925 * 108.77686 * 305.41782 * 18 17 16 20 20 C 1.36937 * 120.60955 * 233.53214 * 19 18 17 21 21 H 1.08002 * 120.00441 * 151.83532 * 20 19 18 22 22 C 1.38815 * 119.99757 * 331.83938 * 20 19 18 23 23 N 1.31621 * 119.99968 * 343.06641 * 22 20 19 24 24 Si 1.86804 * 119.99912 * 163.06079 * 22 20 19 25 25 H 1.48496 * 109.47076 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47114 * 120.00402 * 24 22 20 27 27 H 1.48500 * 109.47032 * 239.99963 * 24 22 20 28 28 C 1.46926 * 118.76387 * 53.55258 * 19 18 17 29 29 H 1.08999 * 109.47041 * 299.99684 * 1 2 3 30 30 H 1.09001 * 109.47390 * 59.99507 * 1 2 3 31 31 H 1.09000 * 109.47556 * 179.97438 * 1 2 3 32 32 H 0.97003 * 120.00400 * 94.99078 * 4 2 1 33 33 H 1.07993 * 120.51053 * 0.02562 * 8 7 5 34 34 H 1.08004 * 118.90358 * 179.72445 * 10 9 8 35 35 H 0.96697 * 113.99863 * 269.97448 * 13 12 11 36 36 H 1.08999 * 109.45819 * 58.66652 * 16 14 2 37 37 H 1.08999 * 109.44883 * 298.69958 * 16 14 2 38 38 H 1.08999 * 109.50134 * 181.32074 * 17 16 14 39 39 H 1.08999 * 109.50086 * 301.38225 * 17 16 14 40 40 H 1.09006 * 109.58559 * 65.17416 * 18 17 16 41 41 H 1.09004 * 109.59042 * 185.59287 * 18 17 16 42 42 H 0.97000 * 119.99851 * 180.02562 * 23 22 20 43 43 H 1.09001 * 109.58815 * 186.62786 * 28 19 18 44 44 H 1.08998 * 109.58822 * 66.20234 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1471 -0.0184 2.3571 6 8 1.8583 1.1614 2.4116 7 6 2.6384 -0.7141 3.5617 8 6 2.9708 -2.0715 3.5236 9 7 3.4126 -2.6539 4.6250 10 6 3.5321 -1.9794 5.7526 11 7 3.2269 -0.7011 5.8416 12 6 2.7812 -0.0320 4.7849 13 8 2.4697 1.2809 4.8820 14 6 2.0399 -0.7212 -1.2494 15 1 3.1261 -0.8012 -1.2060 16 6 1.6354 0.0688 -2.4961 17 6 2.1731 -0.6344 -3.7444 18 6 1.5617 -2.0357 -3.8404 19 7 1.8218 -2.7522 -2.5843 20 6 2.4212 -3.9833 -2.5950 21 1 3.0099 -4.3048 -1.7485 22 6 2.2723 -4.8182 -3.6940 23 7 1.3120 -4.5937 -4.5657 24 14 3.4350 -6.2601 -3.9359 25 1 4.4200 -6.2934 -2.8251 26 1 2.6584 -7.5257 -3.9478 27 1 4.1514 -6.1070 -5.2277 28 6 1.4263 -2.1233 -1.3167 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 2.2490 -1.6319 1.1525 33 1 2.8730 -2.6344 2.6071 34 1 3.8925 -2.4924 6.6320 35 1 1.5492 1.4498 5.1252 36 1 2.0505 1.0750 -2.4389 37 1 0.5484 0.1270 -2.5520 38 1 1.9047 -0.0589 -4.6303 39 1 3.2581 -0.7148 -3.6779 40 1 0.4862 -1.9551 -3.9987 41 1 2.0158 -2.5765 -4.6708 42 1 1.2077 -5.1773 -5.3334 43 1 1.7909 -2.7222 -0.4822 44 1 0.3398 -2.0493 -1.2688 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025453440.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:25 Heat of formation + Delta-G solvation = -29.558026 kcal Electronic energy + Delta-G solvation = -27372.444873 eV Core-core repulsion = 23517.965688 eV Total energy + Delta-G solvation = -3854.479185 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.46437 -40.83600 -39.43223 -38.67330 -36.64003 -34.90835 -34.41861 -33.26452 -32.27390 -31.83132 -29.44288 -27.19343 -26.64654 -25.49067 -24.88770 -23.87874 -22.52041 -21.54168 -20.41178 -20.13081 -19.12916 -18.88907 -18.43502 -17.57592 -16.87854 -16.78399 -16.41154 -15.91748 -15.77024 -15.58774 -15.43083 -15.08028 -14.93659 -14.77650 -14.65757 -14.05467 -13.93322 -13.68447 -13.33025 -13.28090 -13.01339 -12.77878 -12.68581 -12.43962 -12.23080 -12.03112 -11.92015 -11.82604 -11.65857 -11.48181 -11.26529 -11.05067 -10.89099 -10.81667 -10.51331 -10.49715 -10.10337 -8.61632 -7.83639 -5.28414 -0.75543 -0.25018 1.47554 1.50971 1.59756 1.72677 1.94537 2.23287 2.53450 2.60914 2.98391 3.18034 3.31732 3.53259 3.59982 3.69909 3.95074 4.01554 4.07291 4.18334 4.36095 4.38280 4.44814 4.49857 4.68491 4.72974 4.87989 4.91405 5.00245 5.04519 5.07342 5.16802 5.22661 5.32798 5.37964 5.46249 5.52503 5.61500 5.63091 5.71624 5.82558 6.39171 6.42039 6.43791 6.82218 7.07508 7.19004 7.91161 8.42411 9.22456 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014687 B = 0.003478 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.935650 B = 8048.152952 C = 9630.949314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.161 3.839 3 H 0.083 0.917 4 N -0.708 5.708 5 C 0.571 3.429 6 O -0.552 6.552 7 C -0.271 4.271 8 C 0.207 3.793 9 N -0.539 5.539 10 C 0.344 3.656 11 N -0.559 5.559 12 C 0.412 3.588 13 O -0.469 6.469 14 C -0.099 4.099 15 H 0.067 0.933 16 C -0.097 4.097 17 C -0.132 4.132 18 C 0.175 3.825 19 N -0.609 5.609 20 C -0.258 4.258 21 H 0.071 0.929 22 C -0.050 4.050 23 N -0.935 5.935 24 Si 0.960 3.040 25 H -0.264 1.264 26 H -0.295 1.295 27 H -0.295 1.295 28 C 0.149 3.851 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.407 0.593 33 H 0.195 0.805 34 H 0.243 0.757 35 H 0.428 0.572 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.048 0.952 40 H -0.004 1.004 41 H 0.048 0.952 42 H 0.248 0.752 43 H 0.056 0.944 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.944 8.390 16.865 18.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.057 3.943 3 H 0.101 0.899 4 N -0.360 5.360 5 C 0.357 3.643 6 O -0.430 6.430 7 C -0.280 4.280 8 C 0.040 3.960 9 N -0.254 5.254 10 C 0.058 3.942 11 N -0.284 5.284 12 C 0.224 3.776 13 O -0.280 6.280 14 C -0.120 4.120 15 H 0.085 0.915 16 C -0.135 4.135 17 C -0.171 4.171 18 C 0.049 3.951 19 N -0.332 5.332 20 C -0.388 4.388 21 H 0.089 0.911 22 C -0.245 4.245 23 N -0.581 5.581 24 Si 0.789 3.211 25 H -0.188 1.188 26 H -0.222 1.222 27 H -0.222 1.222 28 C 0.024 3.976 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.245 0.755 33 H 0.212 0.788 34 H 0.258 0.742 35 H 0.293 0.707 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.014 0.986 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 1.558 8.845 17.409 19.589 hybrid contribution -0.268 -0.951 -1.246 1.590 sum 1.289 7.894 16.163 18.034 Atomic orbital electron populations 1.22208 0.94591 1.02574 1.02380 1.20894 0.94563 0.96364 0.82504 0.89886 1.46009 1.66286 1.14536 1.09122 1.17713 0.77619 0.86110 0.82836 1.90795 1.51154 1.16006 1.85094 1.21950 1.11897 0.97364 0.96813 1.23887 0.84700 0.89466 0.97904 1.68559 1.16198 1.40412 1.00195 1.25874 0.86814 0.85050 0.96431 1.68249 1.16466 1.11329 1.32363 1.19647 0.86622 0.84320 0.87046 1.84593 1.36039 1.16197 1.91130 1.21759 1.00312 0.96277 0.93612 0.91479 1.21408 1.00928 0.98125 0.93081 1.22013 0.99885 0.97038 0.98152 1.20598 0.95218 0.90163 0.89145 1.44282 1.70138 1.17195 1.01590 1.19566 1.22911 0.92703 1.03605 0.91098 1.25730 0.98801 1.00273 0.99716 1.70190 1.32027 1.40631 1.15256 0.85316 0.78940 0.79259 0.77604 1.18823 1.22181 1.22210 1.21158 0.96344 0.91860 0.88256 0.92747 0.90673 0.91990 0.75536 0.78798 0.74156 0.70721 0.90822 0.91697 0.91457 0.93345 0.98587 0.93338 0.94327 0.92507 0.95684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.75 8.76 71.98 0.63 -3.12 16 2 C 0.16 3.95 2.35 44.99 0.11 4.05 16 3 H 0.08 2.16 7.58 -2.39 -0.02 2.14 16 4 N -0.71 -15.70 4.97 -445.70 -2.22 -17.92 16 5 C 0.57 13.83 7.74 86.69 0.67 14.50 16 6 O -0.55 -16.45 14.98 16.21 0.24 -16.21 16 7 C -0.27 -5.66 5.92 -19.83 -0.12 -5.78 16 8 C 0.21 3.67 10.81 85.02 0.92 4.58 16 9 N -0.54 -9.63 10.42 -199.12 -2.07 -11.71 16 10 C 0.34 5.30 12.27 180.86 2.22 7.52 16 11 N -0.56 -10.98 10.45 -312.03 -3.26 -14.24 16 12 C 0.41 8.90 7.85 85.17 0.67 9.57 16 13 O -0.47 -10.00 11.81 -65.49 -0.77 -10.77 16 14 C -0.10 -2.85 2.27 -10.71 -0.02 -2.87 16 15 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 16 C -0.10 -2.81 4.89 30.62 0.15 -2.66 16 17 C -0.13 -4.63 6.08 30.67 0.19 -4.44 16 18 C 0.17 8.04 5.30 86.36 0.46 8.49 16 19 N -0.61 -28.34 2.99 -699.07 -2.09 -30.43 16 20 C -0.26 -13.32 9.58 84.03 0.81 -12.51 16 21 H 0.07 3.50 7.89 -2.91 -0.02 3.48 16 22 C -0.05 -2.68 4.92 84.86 0.42 -2.27 16 23 N -0.93 -53.92 11.20 21.65 0.24 -53.68 16 24 Si 0.96 43.46 29.59 68.60 2.03 45.49 16 25 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 26 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 27 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 28 C 0.15 5.30 5.26 86.37 0.45 5.76 16 29 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.07 1.69 6.60 -2.39 -0.02 1.67 16 31 H 0.06 1.52 6.23 -2.39 -0.01 1.50 16 32 H 0.41 7.85 5.41 -92.71 -0.50 7.35 16 33 H 0.20 2.58 6.53 -2.91 -0.02 2.56 16 34 H 0.24 1.64 8.06 -2.91 -0.02 1.62 16 35 H 0.43 5.39 9.06 -74.06 -0.67 4.72 16 36 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.06 1.83 6.63 -2.39 -0.02 1.82 16 38 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.00 -0.20 8.14 -2.38 -0.02 -0.21 16 41 H 0.05 2.58 6.06 -2.39 -0.01 2.57 16 42 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 43 H 0.06 1.86 6.75 -2.39 -0.02 1.85 16 44 H 0.03 0.92 6.06 -2.39 -0.01 0.90 16 Total: -1.00 -70.22 351.72 -0.47 -70.70 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -0.11 Total: 17.95 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: 7.54 Total: 20.83 kcal Atomic # 7 Polarization: -118.57 SS G_CDS: -9.40 Total: -127.97 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.53 Total: -26.99 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -70.22 -0.47 -70.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025453440.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.138 kcal (2) G-P(sol) polarization free energy of solvation -70.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds