Wall clock time and date at job start Tue Mar 31 2020 12:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47187 * 2 1 4 4 N 1.46497 * 109.47128 * 119.99750 * 2 1 3 5 5 C 1.34775 * 120.00300 * 274.99820 * 4 2 1 6 6 O 1.21584 * 119.99987 * 0.02562 * 5 4 2 7 7 C 1.47529 * 120.00005 * 179.97438 * 5 4 2 8 8 C 1.39804 * 120.98191 * 0.02562 * 7 5 4 9 9 N 1.32187 * 118.97942 * 179.97438 * 8 7 5 10 10 C 1.31936 * 121.14139 * 0.02562 * 9 8 7 11 11 N 1.31725 * 122.19961 * 0.02562 * 10 9 8 12 12 C 1.32775 * 120.86948 * 359.72028 * 11 10 9 13 13 O 1.35276 * 120.61853 * 180.26542 * 12 11 10 14 14 C 1.52997 * 109.47136 * 239.99872 * 2 1 3 15 15 H 1.08997 * 109.52910 * 300.08115 * 14 2 1 16 16 C 1.53048 * 109.49801 * 60.16424 * 14 2 1 17 17 C 1.53351 * 109.60624 * 181.32577 * 16 14 2 18 18 C 1.53189 * 109.14720 * 298.70763 * 17 16 14 19 19 N 1.46925 * 108.89396 * 54.58483 * 18 17 16 20 20 C 1.36940 * 120.63448 * 126.34374 * 19 18 17 21 21 H 1.07997 * 119.99292 * 332.53604 * 20 19 18 22 22 C 1.38812 * 120.00301 * 152.54843 * 20 19 18 23 23 N 1.31608 * 120.00226 * 159.33101 * 22 20 19 24 24 Si 1.86806 * 119.99740 * 339.32704 * 22 20 19 25 25 H 1.48501 * 109.46946 * 92.92249 * 24 22 20 26 26 H 1.48496 * 109.46962 * 212.92719 * 24 22 20 27 27 H 1.48503 * 109.47163 * 332.92483 * 24 22 20 28 28 C 1.46929 * 118.73425 * 306.31396 * 19 18 17 29 29 H 1.08998 * 109.47196 * 60.00432 * 1 2 3 30 30 H 1.09003 * 109.47187 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47306 * 300.00001 * 1 2 3 32 32 H 0.96999 * 119.99710 * 95.00354 * 4 2 1 33 33 H 1.07998 * 120.51041 * 359.95322 * 8 7 5 34 34 H 1.08010 * 118.90251 * 179.97438 * 10 9 8 35 35 H 0.96698 * 114.00555 * 270.27575 * 13 12 11 36 36 H 1.09002 * 109.45424 * 301.33133 * 16 14 2 37 37 H 1.09000 * 109.46070 * 61.30555 * 16 14 2 38 38 H 1.08993 * 109.68023 * 178.74261 * 17 16 14 39 39 H 1.09001 * 109.47244 * 58.54520 * 17 16 14 40 40 H 1.08997 * 109.58828 * 294.72036 * 18 17 16 41 41 H 1.09001 * 109.58450 * 174.43480 * 18 17 16 42 42 H 0.97000 * 120.00102 * 179.97438 * 23 22 20 43 43 H 1.09004 * 109.58448 * 173.39819 * 28 19 18 44 44 H 1.09001 * 109.58827 * 293.67674 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8575 1.1614 2.4118 7 6 2.6383 -0.7138 3.5618 8 6 2.9766 -2.0697 3.5223 9 7 3.4132 -2.6533 4.6251 10 6 3.5322 -1.9788 5.7527 11 7 3.2257 -0.7008 5.8419 12 6 2.7840 -0.0308 4.7842 13 8 2.4758 1.2829 4.8802 14 6 2.0400 -0.7213 -1.2492 15 1 1.6760 -1.7487 -1.2509 16 6 1.5335 0.0021 -2.4993 17 6 2.0158 -0.7379 -3.7529 18 6 3.5475 -0.7380 -3.7782 19 7 4.0442 -1.3005 -2.5150 20 6 4.9308 -2.3441 -2.5168 21 1 4.9438 -3.0401 -3.3424 22 6 5.8126 -2.5076 -1.4572 23 7 6.3665 -3.6809 -1.2370 24 14 6.2131 -1.0619 -0.3440 25 1 5.2958 -1.0674 0.8238 26 1 7.6165 -1.1748 0.1283 27 1 6.0455 0.2057 -1.0991 28 6 3.5719 -0.7216 -1.2499 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.2490 -1.6317 1.1526 33 1 2.8824 -2.6318 2.6049 34 1 3.8922 -2.4919 6.6324 35 1 1.5564 1.4543 5.1259 36 1 0.4438 0.0252 -2.4889 37 1 1.9183 1.0218 -2.5097 38 1 1.6372 -0.2365 -4.6435 39 1 1.6522 -1.7652 -3.7308 40 1 3.9112 0.2833 -3.8914 41 1 3.8991 -1.3457 -4.6119 42 1 6.9829 -3.7950 -0.4968 43 1 3.9375 -1.3198 -0.4152 44 1 3.9397 0.3002 -1.1557 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025453441.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:29 Heat of formation + Delta-G solvation = -2.570039 kcal Electronic energy + Delta-G solvation = -28095.785008 eV Core-core repulsion = 24242.476110 eV Total energy + Delta-G solvation = -3853.308898 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.55719 -39.73098 -38.23191 -37.73779 -35.36367 -33.81230 -33.14956 -32.28227 -31.09735 -30.47821 -28.96384 -25.79000 -25.21770 -24.46222 -23.50485 -22.56637 -21.06230 -20.51583 -19.50181 -19.44661 -18.20853 -17.77488 -16.87645 -16.68582 -15.86232 -15.53422 -15.43642 -14.69262 -14.49988 -14.27243 -14.09430 -14.02236 -13.89700 -13.54980 -13.32917 -12.93026 -12.82651 -12.47880 -12.38509 -12.19452 -11.69730 -11.53654 -11.44031 -11.29183 -10.93687 -10.81701 -10.56417 -10.49584 -10.16267 -10.01353 -9.89896 -9.82906 -9.74353 -9.63153 -9.48998 -9.02854 -8.67194 -7.02579 -6.01506 -3.36860 0.13526 0.63718 2.71773 2.93672 3.10990 3.22814 3.44786 3.47757 3.51144 3.77112 4.03294 4.45191 4.48121 4.55993 4.70482 4.95921 5.08030 5.12714 5.17309 5.24949 5.31719 5.40715 5.53060 5.58122 5.81635 5.83279 5.87522 5.94791 6.03031 6.07299 6.21608 6.26380 6.30660 6.43200 6.49676 6.52451 6.57336 6.65884 6.67978 6.92639 7.14793 7.42002 7.67199 7.90380 8.10798 8.27008 8.88581 9.65956 10.04564 11.14213 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012509 B = 0.005159 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.856143 B = 5425.753397 C = 6911.082740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.147 3.853 3 H 0.088 0.912 4 N -0.714 5.714 5 C 0.570 3.430 6 O -0.522 6.522 7 C -0.260 4.260 8 C 0.203 3.797 9 N -0.525 5.525 10 C 0.338 3.662 11 N -0.546 5.546 12 C 0.417 3.583 13 O -0.453 6.453 14 C -0.113 4.113 15 H 0.080 0.920 16 C -0.102 4.102 17 C -0.134 4.134 18 C 0.145 3.855 19 N -0.606 5.606 20 C -0.259 4.259 21 H 0.087 0.913 22 C 0.026 3.974 23 N -0.906 5.906 24 Si 0.879 3.121 25 H -0.292 1.292 26 H -0.304 1.304 27 H -0.272 1.272 28 C 0.135 3.865 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.401 0.599 33 H 0.178 0.822 34 H 0.207 0.793 35 H 0.412 0.588 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.021 0.979 41 H 0.062 0.938 42 H 0.263 0.737 43 H 0.070 0.930 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.250 4.849 8.340 16.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.042 3.958 3 H 0.106 0.894 4 N -0.365 5.365 5 C 0.354 3.646 6 O -0.399 6.399 7 C -0.269 4.269 8 C 0.036 3.964 9 N -0.239 5.239 10 C 0.051 3.949 11 N -0.271 5.271 12 C 0.228 3.772 13 O -0.261 6.261 14 C -0.134 4.134 15 H 0.098 0.902 16 C -0.140 4.140 17 C -0.173 4.173 18 C 0.020 3.980 19 N -0.329 5.329 20 C -0.387 4.387 21 H 0.104 0.896 22 C -0.173 4.173 23 N -0.548 5.548 24 Si 0.710 3.290 25 H -0.220 1.220 26 H -0.232 1.232 27 H -0.197 1.197 28 C 0.009 3.991 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.236 0.764 33 H 0.195 0.805 34 H 0.224 0.776 35 H 0.273 0.727 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.039 0.961 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -12.449 5.301 9.060 16.284 hybrid contribution -0.116 0.688 0.168 0.717 sum -12.564 5.989 9.228 16.700 Atomic orbital electron populations 1.22194 0.95195 1.02123 1.02314 1.21107 0.93781 0.97557 0.83305 0.89364 1.46017 1.66671 1.14303 1.09511 1.17528 0.78106 0.86449 0.82468 1.90795 1.49781 1.14592 1.84720 1.22106 1.10427 0.96877 0.97504 1.23607 0.85543 0.90084 0.97162 1.68456 1.15440 1.40305 0.99745 1.25114 0.88464 0.85560 0.95729 1.68142 1.15844 1.10531 1.32538 1.19454 0.86842 0.84178 0.86692 1.84666 1.34537 1.15985 1.90883 1.22010 0.98983 0.99818 0.92591 0.90207 1.21503 0.99364 0.98945 0.94235 1.22044 0.98645 1.00315 0.96346 1.20958 0.91324 0.96512 0.89253 1.44346 1.50469 1.38679 0.99377 1.18939 1.10321 1.01399 1.08019 0.89570 1.25252 0.97482 0.96383 0.98219 1.69822 1.32783 1.21328 1.30916 0.87050 0.76555 0.85040 0.80367 1.21963 1.23208 1.19713 1.21332 0.90680 0.96921 0.90182 0.91122 0.92413 0.92513 0.76363 0.80537 0.77627 0.72710 0.92398 0.92393 0.92551 0.91934 0.96070 0.91954 0.92725 0.91190 0.95837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.14 37.16 0.34 -1.49 16 2 C 0.15 2.07 2.16 -67.93 -0.15 1.93 16 3 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 4 N -0.71 -10.14 4.43 -54.85 -0.24 -10.38 16 5 C 0.57 8.67 7.74 -12.47 -0.10 8.58 16 6 O -0.52 -9.04 14.98 -15.86 -0.24 -9.28 16 7 C -0.26 -3.62 5.92 -104.56 -0.62 -4.24 16 8 C 0.20 2.62 10.80 -16.81 -0.18 2.44 16 9 N -0.52 -6.69 10.42 -14.29 -0.15 -6.84 16 10 C 0.34 3.77 12.27 -92.09 -1.13 2.64 16 11 N -0.55 -6.97 10.45 -14.32 -0.15 -7.12 16 12 C 0.42 5.70 7.85 -16.18 -0.13 5.57 16 13 O -0.45 -5.86 11.81 -38.67 -0.46 -6.31 16 14 C -0.11 -1.77 1.98 -90.50 -0.18 -1.95 16 15 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 16 C -0.10 -1.43 4.86 -26.52 -0.13 -1.56 16 17 C -0.13 -2.02 6.11 -26.45 -0.16 -2.18 16 18 C 0.15 2.74 6.50 -3.71 -0.02 2.72 16 19 N -0.61 -13.78 2.77 -172.32 -0.48 -14.26 16 20 C -0.26 -6.98 10.03 -15.06 -0.15 -7.13 16 21 H 0.09 2.49 8.06 -52.49 -0.42 2.06 16 22 C 0.03 0.72 5.23 -17.44 -0.09 0.63 16 23 N -0.91 -26.96 13.97 55.49 0.78 -26.19 16 24 Si 0.88 22.42 24.34 -169.99 -4.14 18.29 16 25 H -0.29 -7.05 6.62 56.52 0.37 -6.68 16 26 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16 27 H -0.27 -7.01 6.64 56.52 0.38 -6.63 16 28 C 0.13 2.77 3.25 -3.71 -0.01 2.76 16 29 H 0.07 0.73 6.40 -51.93 -0.33 0.39 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.40 5.24 6.55 -40.82 -0.27 4.97 16 33 H 0.18 1.98 6.53 -52.49 -0.34 1.63 16 34 H 0.21 1.44 8.06 -52.48 -0.42 1.01 16 35 H 0.41 3.28 9.06 45.56 0.41 3.69 16 36 H 0.06 0.67 6.37 -51.93 -0.33 0.34 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 1.18 7.93 -51.93 -0.41 0.76 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.07 1.56 4.01 -51.93 -0.21 1.35 16 44 H 0.02 0.52 7.07 -51.93 -0.37 0.15 16 LS Contribution 350.28 15.07 5.28 5.28 Total: -1.00 -34.29 350.28 -7.74 -42.03 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -5.23 Total: 6.08 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: -2.71 Total: 8.70 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: -0.24 Total: -64.79 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.69 Total: -15.59 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.14 Total: 18.29 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.29 -7.74 -42.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025453441.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.456 kcal (2) G-P(sol) polarization free energy of solvation -34.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds