Wall clock time and date at job start Tue Mar 31 2020 12:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09009 * 109.46891 * 2 1 4 4 N 1.46504 * 109.47168 * 240.00424 * 2 1 3 5 5 C 1.34769 * 119.99988 * 84.99697 * 4 2 1 6 6 O 1.21579 * 120.00263 * 0.02562 * 5 4 2 7 7 C 1.47541 * 119.99660 * 179.97438 * 5 4 2 8 8 C 1.39802 * 120.97773 * 0.02562 * 7 5 4 9 9 N 1.32191 * 118.97861 * 179.97438 * 8 7 5 10 10 C 1.31937 * 121.13966 * 359.97438 * 9 8 7 11 11 N 1.31726 * 122.19477 * 359.97438 * 10 9 8 12 12 C 1.32769 * 120.87447 * 359.72885 * 11 10 9 13 13 O 1.35279 * 120.61543 * 180.26388 * 12 11 10 14 14 C 1.52996 * 109.47039 * 119.99790 * 2 1 3 15 15 H 1.09008 * 109.52458 * 179.91814 * 14 2 1 16 16 C 1.53032 * 109.50284 * 300.00048 * 14 2 1 17 17 C 1.53036 * 109.54377 * 181.31688 * 16 14 2 18 18 C 1.53193 * 109.31010 * 298.64027 * 17 16 14 19 19 N 1.46918 * 108.89691 * 54.56088 * 18 17 16 20 20 C 1.36934 * 120.63246 * 126.46826 * 19 18 17 21 21 H 1.07998 * 119.99994 * 331.91164 * 20 19 18 22 22 C 1.38810 * 120.00388 * 151.91331 * 20 19 18 23 23 N 1.31626 * 119.99638 * 343.17136 * 22 20 19 24 24 Si 1.86793 * 120.00463 * 163.16956 * 22 20 19 25 25 H 1.48501 * 109.47077 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47046 * 119.99803 * 24 22 20 27 27 H 1.48496 * 109.47392 * 239.99957 * 24 22 20 28 28 C 1.46962 * 118.71629 * 306.64210 * 19 18 17 29 29 H 1.09001 * 109.46964 * 299.99670 * 1 2 3 30 30 H 1.09002 * 109.47005 * 60.00127 * 1 2 3 31 31 H 1.09002 * 109.46606 * 179.97438 * 1 2 3 32 32 H 0.96999 * 119.99229 * 264.99450 * 4 2 1 33 33 H 1.07998 * 120.51557 * 359.95499 * 8 7 5 34 34 H 1.07995 * 118.90473 * 179.97438 * 10 9 8 35 35 H 0.96705 * 114.00008 * 270.26268 * 13 12 11 36 36 H 1.09002 * 109.46038 * 61.29238 * 16 14 2 37 37 H 1.09000 * 109.46265 * 301.34033 * 16 14 2 38 38 H 1.08998 * 109.49983 * 178.68458 * 17 16 14 39 39 H 1.09002 * 109.52122 * 58.60233 * 17 16 14 40 40 H 1.09005 * 109.58538 * 174.42044 * 18 17 16 41 41 H 1.09006 * 109.58252 * 294.69757 * 18 17 16 42 42 H 0.97000 * 119.99586 * 180.02562 * 23 22 20 43 43 H 1.09007 * 109.46655 * 293.57470 * 28 19 18 44 44 H 1.08995 * 109.60064 * 173.21451 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 7 2.0184 -0.6905 -1.1963 5 6 2.1471 -0.0182 -2.3571 6 8 1.8583 1.1616 -2.4116 7 6 2.6394 -0.7135 -3.5616 8 6 2.9778 -2.0694 -3.5220 9 7 3.4144 -2.6530 -4.6248 10 6 3.5334 -1.9785 -5.7525 11 7 3.2268 -0.7006 -5.8416 12 6 2.7747 -0.0332 -4.7866 13 8 2.4564 1.2779 -4.8854 14 6 2.0400 -0.7212 1.2492 15 1 3.1301 -0.7230 1.2494 16 6 1.5303 -0.0003 2.4992 17 6 2.0668 -0.7016 3.7492 18 6 1.5535 -2.1446 3.7801 19 7 1.9123 -2.8044 2.5174 20 6 2.5960 -3.9908 2.5197 21 1 3.2570 -4.2315 3.3392 22 6 2.4397 -4.8842 1.4688 23 7 1.4151 -4.7655 0.6511 24 14 3.6833 -6.2546 1.2151 25 1 4.7335 -6.1701 2.2616 26 1 2.9974 -7.5686 1.3064 27 1 4.3080 -6.1144 -0.1248 28 6 1.5265 -2.1645 1.2519 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 2.2492 -1.6317 -1.1526 33 1 2.8843 -2.6313 -2.6045 34 1 3.8942 -2.4913 -6.6318 35 1 3.1931 1.8765 -4.7007 36 1 0.4405 -0.0204 2.5110 37 1 1.8739 1.0340 2.4874 38 1 1.7224 -0.1738 4.6385 39 1 3.1565 -0.7035 3.7263 40 1 2.0112 -2.6775 4.6137 41 1 0.4698 -2.1445 3.8974 42 1 1.3057 -5.3900 -0.0830 43 1 0.4403 -2.1660 1.1603 44 1 1.9663 -2.7103 0.4172 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025453443.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:33 Heat of formation + Delta-G solvation = -6.901441 kcal Electronic energy + Delta-G solvation = -27887.122901 eV Core-core repulsion = 24033.626179 eV Total energy + Delta-G solvation = -3853.496722 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.49108 -39.59768 -38.09183 -37.63737 -35.10979 -33.73622 -33.13125 -32.22280 -30.87631 -29.91872 -28.22674 -25.64186 -25.35875 -24.45533 -23.65411 -22.33470 -21.05889 -20.22817 -19.41946 -18.76863 -18.12473 -17.64533 -16.76226 -16.59272 -15.77195 -15.21236 -15.01517 -14.59407 -14.44346 -14.20379 -14.07406 -13.98709 -13.75308 -13.55982 -13.08829 -12.63947 -12.46356 -12.35156 -12.24152 -11.80757 -11.57797 -11.43681 -11.09049 -10.90869 -10.87677 -10.69098 -10.47046 -10.22731 -10.20804 -9.97759 -9.84579 -9.77595 -9.60809 -9.55376 -9.47186 -8.85834 -8.56498 -6.73682 -5.88687 -3.30715 0.19776 0.69240 2.81306 3.02908 3.22799 3.30232 3.40381 3.41432 3.58678 3.83524 4.10341 4.41541 4.58190 4.66502 4.98854 5.10327 5.22913 5.27420 5.38382 5.49676 5.52887 5.64298 5.72811 5.84778 5.90002 6.00340 6.15742 6.21654 6.23426 6.37682 6.44085 6.49119 6.55877 6.60909 6.71114 6.77886 6.82091 6.96162 7.19336 7.20580 7.47137 7.60977 7.71396 7.73461 8.24680 8.35003 9.12328 9.74991 10.32497 11.19528 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011556 B = 0.004768 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.506393 B = 5871.109347 C = 7915.057148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.155 3.845 3 H 0.080 0.920 4 N -0.709 5.709 5 C 0.566 3.434 6 O -0.527 6.527 7 C -0.257 4.257 8 C 0.202 3.798 9 N -0.525 5.525 10 C 0.336 3.664 11 N -0.547 5.547 12 C 0.415 3.585 13 O -0.454 6.454 14 C -0.124 4.124 15 H 0.069 0.931 16 C -0.101 4.101 17 C -0.134 4.134 18 C 0.144 3.856 19 N -0.592 5.592 20 C -0.249 4.249 21 H 0.066 0.934 22 C 0.003 3.997 23 N -0.904 5.904 24 Si 0.898 3.102 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.287 1.287 28 C 0.177 3.823 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.405 0.595 33 H 0.180 0.820 34 H 0.206 0.794 35 H 0.412 0.588 36 H 0.061 0.939 37 H 0.047 0.953 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.017 0.983 42 H 0.253 0.747 43 H 0.027 0.973 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.025 9.078 -6.633 11.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.050 3.950 3 H 0.099 0.901 4 N -0.362 5.362 5 C 0.351 3.649 6 O -0.405 6.405 7 C -0.267 4.267 8 C 0.036 3.964 9 N -0.240 5.240 10 C 0.049 3.951 11 N -0.272 5.272 12 C 0.227 3.773 13 O -0.262 6.262 14 C -0.145 4.145 15 H 0.087 0.913 16 C -0.139 4.139 17 C -0.173 4.173 18 C 0.017 3.983 19 N -0.314 5.314 20 C -0.379 4.379 21 H 0.083 0.917 22 C -0.196 4.196 23 N -0.549 5.549 24 Si 0.727 3.273 25 H -0.203 1.203 26 H -0.217 1.217 27 H -0.214 1.214 28 C 0.051 3.949 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.243 0.757 33 H 0.197 0.803 34 H 0.222 0.778 35 H 0.273 0.727 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.035 0.965 42 H 0.063 0.937 43 H 0.045 0.955 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.539 9.215 -7.684 12.264 hybrid contribution 0.792 -0.655 0.579 1.180 sum 3.332 8.559 -7.106 11.613 Atomic orbital electron populations 1.22272 0.95328 1.03133 1.01696 1.21006 0.94274 0.96326 0.83348 0.90148 1.46153 1.66036 1.14638 1.09340 1.17554 0.78370 0.86536 0.82447 1.90786 1.50103 1.14970 1.84635 1.22138 1.10206 0.97808 0.96500 1.23696 0.85525 0.89847 0.97316 1.68472 1.16090 1.39564 0.99869 1.25087 0.88759 0.85478 0.95765 1.68129 1.15222 1.11495 1.32354 1.19455 0.85190 0.86699 0.85997 1.84646 1.38713 1.11016 1.91841 1.22157 1.00668 0.99642 0.92059 0.91283 1.21424 1.00395 0.97512 0.94608 1.21997 1.00660 0.98293 0.96358 1.20925 0.96429 0.90960 0.89944 1.44016 1.65828 1.22138 0.99452 1.19251 1.17723 0.93789 1.07145 0.91677 1.25011 0.97044 0.97363 1.00146 1.70043 1.27337 1.38417 1.19077 0.86295 0.81115 0.81984 0.77867 1.20328 1.21684 1.21354 1.20869 0.96850 0.86886 0.90329 0.91523 0.92932 0.91144 0.75744 0.80277 0.77790 0.72680 0.92081 0.93448 0.93051 0.92477 0.92941 0.96464 0.93656 0.95523 0.89958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 8.79 37.16 0.33 -2.18 16 2 C 0.15 2.37 2.41 -67.93 -0.16 2.21 16 3 H 0.08 1.24 7.58 -51.92 -0.39 0.85 16 4 N -0.71 -10.64 4.96 -54.84 -0.27 -10.91 16 5 C 0.57 8.62 7.74 -12.47 -0.10 8.52 16 6 O -0.53 -9.11 14.98 -15.85 -0.24 -9.35 16 7 C -0.26 -3.52 5.92 -104.56 -0.62 -4.14 16 8 C 0.20 2.64 10.80 -16.81 -0.18 2.46 16 9 N -0.53 -6.72 10.42 -14.29 -0.15 -6.87 16 10 C 0.34 3.69 12.27 -92.09 -1.13 2.57 16 11 N -0.55 -6.84 10.45 -14.32 -0.15 -6.99 16 12 C 0.42 5.53 7.85 -16.19 -0.13 5.40 16 13 O -0.45 -5.73 11.81 -38.67 -0.46 -6.19 16 14 C -0.12 -2.09 2.33 -90.50 -0.21 -2.30 16 15 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 16 C -0.10 -1.56 4.77 -26.70 -0.13 -1.69 16 17 C -0.13 -2.17 6.08 -26.61 -0.16 -2.33 16 18 C 0.14 2.84 6.51 -3.71 -0.02 2.81 16 19 N -0.59 -13.71 3.00 -172.29 -0.52 -14.23 16 20 C -0.25 -6.41 9.58 -15.06 -0.14 -6.56 16 21 H 0.07 1.68 7.88 -52.49 -0.41 1.26 16 22 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 23 N -0.90 -23.92 11.20 55.49 0.62 -23.30 16 24 Si 0.90 20.43 29.59 -169.99 -5.03 15.40 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 28 C 0.18 3.68 4.08 -3.69 -0.02 3.67 16 29 H 0.07 0.91 6.46 -51.93 -0.34 0.58 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.16 6.32 -51.93 -0.33 0.83 16 32 H 0.41 6.09 5.11 -40.82 -0.21 5.89 16 33 H 0.18 2.22 6.53 -52.49 -0.34 1.88 16 34 H 0.21 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.41 3.33 9.06 45.56 0.41 3.74 16 36 H 0.06 0.93 6.50 -51.93 -0.34 0.59 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.05 1.03 7.93 -51.93 -0.41 0.61 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.25 6.52 8.31 -40.82 -0.34 6.18 16 43 H 0.03 0.60 6.18 -51.92 -0.32 0.28 16 44 H 0.08 1.85 4.66 -51.93 -0.24 1.61 16 LS Contribution 351.19 15.07 5.29 5.29 Total: -1.00 -30.91 351.19 -8.67 -39.59 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -5.02 Total: 9.12 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: -2.76 Total: 8.43 kcal Atomic # 7 Polarization: -61.82 SS G_CDS: -0.47 Total: -62.29 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.69 Total: -15.54 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.40 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.91 -8.67 -39.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025453443.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.685 kcal (2) G-P(sol) polarization free energy of solvation -30.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds