Wall clock time and date at job start Tue Mar 31 2020 12:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09009 * 109.46891 * 2 1 4 4 N 1.46504 * 109.47168 * 240.00424 * 2 1 3 5 5 C 1.34769 * 119.99988 * 84.99697 * 4 2 1 6 6 O 1.21579 * 120.00263 * 0.02562 * 5 4 2 7 7 C 1.47541 * 119.99660 * 179.97438 * 5 4 2 8 8 C 1.39802 * 120.97773 * 0.02562 * 7 5 4 9 9 N 1.32191 * 118.97861 * 179.97438 * 8 7 5 10 10 C 1.31937 * 121.13966 * 359.97438 * 9 8 7 11 11 N 1.31726 * 122.19477 * 359.97438 * 10 9 8 12 12 C 1.32769 * 120.87447 * 359.72885 * 11 10 9 13 13 O 1.35279 * 120.61543 * 180.26388 * 12 11 10 14 14 C 1.52996 * 109.47039 * 119.99790 * 2 1 3 15 15 H 1.09008 * 109.52458 * 179.91814 * 14 2 1 16 16 C 1.53032 * 109.50284 * 300.00048 * 14 2 1 17 17 C 1.53036 * 109.54377 * 181.31688 * 16 14 2 18 18 C 1.53193 * 109.31010 * 298.64027 * 17 16 14 19 19 N 1.46918 * 108.89691 * 54.56088 * 18 17 16 20 20 C 1.36934 * 120.63246 * 126.46826 * 19 18 17 21 21 H 1.07998 * 119.99994 * 331.91164 * 20 19 18 22 22 C 1.38810 * 120.00388 * 151.91331 * 20 19 18 23 23 N 1.31626 * 119.99638 * 343.17136 * 22 20 19 24 24 Si 1.86793 * 120.00463 * 163.16956 * 22 20 19 25 25 H 1.48501 * 109.47077 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47046 * 119.99803 * 24 22 20 27 27 H 1.48496 * 109.47392 * 239.99957 * 24 22 20 28 28 C 1.46962 * 118.71629 * 306.64210 * 19 18 17 29 29 H 1.09001 * 109.46964 * 299.99670 * 1 2 3 30 30 H 1.09002 * 109.47005 * 60.00127 * 1 2 3 31 31 H 1.09002 * 109.46606 * 179.97438 * 1 2 3 32 32 H 0.96999 * 119.99229 * 264.99450 * 4 2 1 33 33 H 1.07998 * 120.51557 * 359.95499 * 8 7 5 34 34 H 1.07995 * 118.90473 * 179.97438 * 10 9 8 35 35 H 0.96705 * 114.00008 * 270.26268 * 13 12 11 36 36 H 1.09002 * 109.46038 * 61.29238 * 16 14 2 37 37 H 1.09000 * 109.46265 * 301.34033 * 16 14 2 38 38 H 1.08998 * 109.49983 * 178.68458 * 17 16 14 39 39 H 1.09002 * 109.52122 * 58.60233 * 17 16 14 40 40 H 1.09005 * 109.58538 * 174.42044 * 18 17 16 41 41 H 1.09006 * 109.58252 * 294.69757 * 18 17 16 42 42 H 0.97000 * 119.99586 * 180.02562 * 23 22 20 43 43 H 1.09007 * 109.46655 * 293.57470 * 28 19 18 44 44 H 1.08995 * 109.60064 * 173.21451 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 7 2.0184 -0.6905 -1.1963 5 6 2.1471 -0.0182 -2.3571 6 8 1.8583 1.1616 -2.4116 7 6 2.6394 -0.7135 -3.5616 8 6 2.9778 -2.0694 -3.5220 9 7 3.4144 -2.6530 -4.6248 10 6 3.5334 -1.9785 -5.7525 11 7 3.2268 -0.7006 -5.8416 12 6 2.7747 -0.0332 -4.7866 13 8 2.4564 1.2779 -4.8854 14 6 2.0400 -0.7212 1.2492 15 1 3.1301 -0.7230 1.2494 16 6 1.5303 -0.0003 2.4992 17 6 2.0668 -0.7016 3.7492 18 6 1.5535 -2.1446 3.7801 19 7 1.9123 -2.8044 2.5174 20 6 2.5960 -3.9908 2.5197 21 1 3.2570 -4.2315 3.3392 22 6 2.4397 -4.8842 1.4688 23 7 1.4151 -4.7655 0.6511 24 14 3.6833 -6.2546 1.2151 25 1 4.7335 -6.1701 2.2616 26 1 2.9974 -7.5686 1.3064 27 1 4.3080 -6.1144 -0.1248 28 6 1.5265 -2.1645 1.2519 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 2.2492 -1.6317 -1.1526 33 1 2.8843 -2.6313 -2.6045 34 1 3.8942 -2.4913 -6.6318 35 1 3.1931 1.8765 -4.7007 36 1 0.4405 -0.0204 2.5110 37 1 1.8739 1.0340 2.4874 38 1 1.7224 -0.1738 4.6385 39 1 3.1565 -0.7035 3.7263 40 1 2.0112 -2.6775 4.6137 41 1 0.4698 -2.1445 3.8974 42 1 1.3057 -5.3900 -0.0830 43 1 0.4403 -2.1660 1.1603 44 1 1.9663 -2.7103 0.4172 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025453443.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:32 Heat of formation + Delta-G solvation = -28.450893 kcal Electronic energy + Delta-G solvation = -27888.057355 eV Core-core repulsion = 24033.626179 eV Total energy + Delta-G solvation = -3854.431176 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.49651 -40.83542 -39.42291 -38.69337 -36.54091 -34.95835 -34.53878 -33.41229 -32.23770 -31.50171 -29.59928 -27.17273 -26.66396 -25.51948 -24.90892 -23.91894 -22.41916 -21.49760 -20.43689 -20.17124 -19.16410 -18.86463 -18.46621 -17.58782 -17.07410 -16.64554 -16.25768 -15.93694 -15.76637 -15.63728 -15.35132 -15.15123 -14.96773 -14.78510 -14.64618 -14.11799 -13.93957 -13.68568 -13.35683 -13.24917 -12.95177 -12.77203 -12.64707 -12.48274 -12.33364 -12.06054 -11.85460 -11.82577 -11.70274 -11.46784 -11.19438 -11.02924 -10.89746 -10.85608 -10.55028 -10.48576 -10.09885 -8.58900 -7.82827 -5.27181 -0.78619 -0.30095 1.47881 1.52934 1.60456 1.69718 1.95574 2.20397 2.54355 2.57386 2.94186 3.13680 3.29825 3.50857 3.59310 3.69054 3.96583 4.05273 4.15242 4.16947 4.32869 4.34144 4.42996 4.51795 4.65891 4.78057 4.87580 4.89191 5.00892 5.02450 5.07835 5.20209 5.21737 5.31176 5.43327 5.48265 5.50947 5.58022 5.59985 5.72263 5.83675 6.37729 6.40461 6.44343 6.78314 7.03812 7.21296 7.91514 8.43394 9.22414 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011556 B = 0.004768 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.506393 B = 5871.109347 C = 7915.057148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.160 3.840 3 H 0.088 0.912 4 N -0.710 5.710 5 C 0.570 3.430 6 O -0.550 6.550 7 C -0.270 4.270 8 C 0.205 3.795 9 N -0.540 5.540 10 C 0.344 3.656 11 N -0.554 5.554 12 C 0.416 3.584 13 O -0.465 6.465 14 C -0.110 4.110 15 H 0.061 0.939 16 C -0.100 4.100 17 C -0.123 4.123 18 C 0.137 3.863 19 N -0.611 5.611 20 C -0.262 4.262 21 H 0.059 0.941 22 C -0.038 4.038 23 N -0.925 5.925 24 Si 0.953 3.047 25 H -0.274 1.274 26 H -0.297 1.297 27 H -0.283 1.283 28 C 0.186 3.814 29 H 0.083 0.917 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.404 0.596 33 H 0.179 0.821 34 H 0.246 0.754 35 H 0.429 0.571 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.052 0.948 40 H 0.047 0.953 41 H 0.013 0.987 42 H 0.251 0.749 43 H 0.007 0.993 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.791 10.049 -6.955 12.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.056 3.944 3 H 0.106 0.894 4 N -0.361 5.361 5 C 0.356 3.644 6 O -0.429 6.429 7 C -0.280 4.280 8 C 0.038 3.962 9 N -0.255 5.255 10 C 0.059 3.941 11 N -0.279 5.279 12 C 0.227 3.773 13 O -0.276 6.276 14 C -0.130 4.130 15 H 0.079 0.921 16 C -0.138 4.138 17 C -0.162 4.162 18 C 0.011 3.989 19 N -0.335 5.335 20 C -0.392 4.392 21 H 0.077 0.923 22 C -0.234 4.234 23 N -0.571 5.571 24 Si 0.782 3.218 25 H -0.199 1.199 26 H -0.224 1.224 27 H -0.210 1.210 28 C 0.060 3.940 29 H 0.101 0.899 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.241 0.759 33 H 0.196 0.804 34 H 0.262 0.738 35 H 0.293 0.707 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.031 0.969 42 H 0.060 0.940 43 H 0.025 0.975 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.322 10.212 -7.991 13.386 hybrid contribution 0.537 -0.979 0.684 1.309 sum 3.858 9.234 -7.307 12.391 Atomic orbital electron populations 1.22193 0.95032 1.02039 1.02334 1.20948 0.94371 0.96320 0.82792 0.89411 1.46163 1.65948 1.14558 1.09450 1.17707 0.77760 0.86246 0.82700 1.90764 1.51282 1.15833 1.85005 1.21970 1.11781 0.98036 0.96169 1.23711 0.85137 0.89645 0.97662 1.68543 1.16775 1.39946 1.00285 1.25920 0.86904 0.85033 0.96288 1.68254 1.15697 1.12101 1.31854 1.19570 0.84634 0.87011 0.86044 1.84594 1.40049 1.11122 1.91847 1.21934 0.99961 0.97280 0.93858 0.92075 1.21448 1.00620 0.98648 0.93072 1.21882 1.00275 0.95907 0.98161 1.21086 0.96223 0.93088 0.88458 1.44302 1.65907 1.22014 1.01234 1.19467 1.17825 0.94901 1.07035 0.92312 1.25577 0.98396 0.99265 1.00186 1.70159 1.28496 1.39092 1.19385 0.85430 0.79283 0.79263 0.77792 1.19916 1.22439 1.20968 1.20692 0.95421 0.88936 0.88902 0.89863 0.93271 0.93015 0.75867 0.80365 0.73821 0.70660 0.91710 0.90571 0.89994 0.92910 0.93436 0.96919 0.93986 0.97541 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.65 8.79 71.98 0.63 -4.01 16 2 C 0.16 4.77 2.41 44.99 0.11 4.88 16 3 H 0.09 2.55 7.58 -2.38 -0.02 2.54 16 4 N -0.71 -21.30 4.96 -445.69 -2.21 -23.51 16 5 C 0.57 17.22 7.74 86.70 0.67 17.89 16 6 O -0.55 -18.67 14.98 16.25 0.24 -18.42 16 7 C -0.27 -7.29 5.92 -19.83 -0.12 -7.41 16 8 C 0.20 5.29 10.80 85.02 0.92 6.21 16 9 N -0.54 -13.21 10.42 -199.13 -2.07 -15.28 16 10 C 0.34 6.88 12.27 180.86 2.22 9.10 16 11 N -0.55 -12.95 10.45 -312.05 -3.26 -16.21 16 12 C 0.42 10.71 7.85 85.17 0.67 11.38 16 13 O -0.47 -11.33 11.81 -65.42 -0.77 -12.10 16 14 C -0.11 -3.60 2.33 -10.72 -0.02 -3.62 16 15 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 16 C -0.10 -2.83 4.77 30.62 0.15 -2.68 16 17 C -0.12 -3.72 6.08 30.67 0.19 -3.53 16 18 C 0.14 5.33 6.51 86.36 0.56 5.89 16 19 N -0.61 -28.54 3.00 -699.01 -2.10 -30.63 16 20 C -0.26 -13.62 9.58 84.03 0.81 -12.82 16 21 H 0.06 3.06 7.88 -2.91 -0.02 3.04 16 22 C -0.04 -1.98 4.92 84.86 0.42 -1.56 16 23 N -0.93 -49.90 11.20 21.65 0.24 -49.66 16 24 Si 0.95 42.35 29.59 68.60 2.03 44.38 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 26 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 27 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 28 C 0.19 7.85 4.08 86.36 0.35 8.20 16 29 H 0.08 2.14 6.46 -2.39 -0.02 2.12 16 30 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.05 1.71 6.32 -2.39 -0.02 1.70 16 32 H 0.40 12.45 5.11 -92.71 -0.47 11.98 16 33 H 0.18 4.52 6.53 -2.91 -0.02 4.50 16 34 H 0.25 2.60 8.06 -2.91 -0.02 2.57 16 35 H 0.43 6.53 9.06 -74.05 -0.67 5.85 16 36 H 0.06 1.81 6.50 -2.39 -0.02 1.80 16 37 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.05 1.85 7.93 -2.38 -0.02 1.83 16 41 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 42 H 0.25 13.14 8.31 -92.71 -0.77 12.37 16 43 H 0.01 0.30 6.18 -2.38 -0.01 0.29 16 44 H 0.06 2.83 4.66 -2.39 -0.01 2.82 16 Total: -1.00 -65.82 351.19 -0.44 -66.25 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: -0.09 Total: 27.28 kcal Atomic # 6 Polarization: 20.36 SS G_CDS: 7.55 Total: 27.90 kcal Atomic # 7 Polarization: -125.89 SS G_CDS: -9.40 Total: -135.29 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -0.53 Total: -30.52 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -65.82 -0.44 -66.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025453443.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.802 kcal (2) G-P(sol) polarization free energy of solvation -65.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds