Wall clock time and date at job start Tue Mar 31 2020 12:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09011 * 109.46963 * 2 1 4 4 N 1.46498 * 109.47354 * 240.00066 * 2 1 3 5 5 C 1.34779 * 119.99718 * 85.00322 * 4 2 1 6 6 O 1.21582 * 120.00152 * 359.97438 * 5 4 2 7 7 C 1.47536 * 119.99481 * 180.02562 * 5 4 2 8 8 C 1.39810 * 120.98216 * 359.71790 * 7 5 4 9 9 N 1.32191 * 118.97848 * 179.71801 * 8 7 5 10 10 C 1.31936 * 121.14001 * 0.57073 * 9 8 7 11 11 N 1.31725 * 122.19942 * 359.70187 * 10 9 8 12 12 C 1.32774 * 120.87047 * 0.02562 * 11 10 9 13 13 O 1.35284 * 120.61766 * 180.02562 * 12 11 10 14 14 C 1.53005 * 109.47177 * 119.99591 * 2 1 3 15 15 H 1.09000 * 109.51848 * 60.08221 * 14 2 1 16 16 C 1.53036 * 109.49940 * 300.00485 * 14 2 1 17 17 C 1.53037 * 109.53839 * 178.67965 * 16 14 2 18 18 C 1.53196 * 109.31160 * 61.36690 * 17 16 14 19 19 N 1.46932 * 108.77447 * 305.36348 * 18 17 16 20 20 C 1.36933 * 120.63227 * 233.58897 * 19 18 17 21 21 H 1.08000 * 120.00106 * 151.83446 * 20 19 18 22 22 C 1.38815 * 119.99801 * 331.83419 * 20 19 18 23 23 N 1.31612 * 120.00090 * 343.07689 * 22 20 19 24 24 Si 1.86795 * 119.99858 * 163.07634 * 22 20 19 25 25 H 1.48497 * 109.47398 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47290 * 120.00195 * 24 22 20 27 27 H 1.48499 * 109.47370 * 239.99780 * 24 22 20 28 28 C 1.46924 * 118.73801 * 53.60831 * 19 18 17 29 29 H 1.09001 * 109.47006 * 59.99978 * 1 2 3 30 30 H 1.09000 * 109.46492 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47295 * 300.00249 * 1 2 3 32 32 H 0.96999 * 119.99799 * 264.99538 * 4 2 1 33 33 H 1.07992 * 120.50895 * 359.97438 * 8 7 5 34 34 H 1.08003 * 118.90126 * 179.72416 * 10 9 8 35 35 H 0.96699 * 113.99701 * 269.97809 * 13 12 11 36 36 H 1.09003 * 109.45790 * 298.70122 * 16 14 2 37 37 H 1.09000 * 109.45981 * 58.67040 * 16 14 2 38 38 H 1.08996 * 109.49853 * 181.31152 * 17 16 14 39 39 H 1.09000 * 109.49859 * 301.38163 * 17 16 14 40 40 H 1.08995 * 109.58928 * 65.14840 * 18 17 16 41 41 H 1.09000 * 109.58658 * 185.58063 * 18 17 16 42 42 H 0.97004 * 120.00272 * 180.02562 * 23 22 20 43 43 H 1.08993 * 109.59213 * 186.60405 * 28 19 18 44 44 H 1.09005 * 109.58716 * 66.17778 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1472 -0.0181 -2.3571 6 8 1.8576 1.1614 -2.4117 7 6 2.6385 -0.7138 -3.5618 8 6 2.9818 -2.0684 -3.5209 9 7 3.4124 -2.6536 -4.6253 10 6 3.5320 -1.9790 -5.7528 11 7 3.2269 -0.7007 -5.8417 12 6 2.7814 -0.0315 -4.7849 13 8 2.4691 1.2812 -4.8821 14 6 2.0400 -0.7212 1.2493 15 1 1.6783 -1.7494 1.2494 16 6 1.5302 -0.0002 2.4993 17 6 2.0125 -0.7398 3.7492 18 6 3.5441 -0.7368 3.7803 19 7 4.0439 -1.2969 2.5172 20 6 4.9328 -2.3385 2.5192 21 1 4.9565 -3.0298 1.6898 22 6 5.8035 -2.5058 3.5873 23 7 6.0178 -1.5123 4.4235 24 14 6.6708 -4.1411 3.8379 25 1 6.2615 -5.0874 2.7692 26 1 8.1404 -3.9357 3.7818 27 1 6.2996 -4.7005 5.1625 28 6 3.5720 -0.7180 1.2520 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 2.2491 -1.6317 -1.1525 33 1 2.8927 -2.6291 -2.6023 34 1 3.8916 -2.4921 -6.6325 35 1 3.2081 1.8761 -4.6952 36 1 1.9125 1.0205 2.5110 37 1 0.4404 0.0203 2.4875 38 1 1.6297 -0.2392 4.6385 39 1 1.6506 -1.7677 3.7261 40 1 3.9053 0.2852 3.8949 41 1 3.8939 -1.3459 4.6138 42 1 6.6265 -1.6291 5.1697 43 1 3.9400 -1.3145 0.4173 44 1 3.9353 0.3056 1.1605 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025453448.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:36 Heat of formation + Delta-G solvation = -8.457874 kcal Electronic energy + Delta-G solvation = -27405.122848 eV Core-core repulsion = 23551.558634 eV Total energy + Delta-G solvation = -3853.564214 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.63306 -39.71678 -38.11582 -37.69481 -35.29862 -33.88592 -33.09867 -32.18946 -30.73446 -30.41872 -28.53341 -25.81249 -25.21293 -24.53915 -23.44655 -22.01579 -21.16565 -20.52862 -19.52092 -19.24677 -18.28255 -17.77667 -16.78593 -16.68434 -15.92845 -15.37518 -15.02507 -14.73303 -14.55571 -14.36747 -14.12928 -13.99604 -13.68658 -13.43814 -13.23112 -12.73277 -12.51780 -12.49493 -12.29901 -11.85742 -11.64658 -11.53281 -11.16462 -11.02600 -11.01504 -10.71670 -10.47286 -10.25128 -10.20095 -9.99898 -9.96864 -9.91553 -9.72185 -9.60252 -9.47513 -9.02485 -8.51141 -6.71317 -5.83346 -3.26642 0.05487 0.54805 2.67137 2.86948 3.06928 3.33154 3.41434 3.42873 3.44157 3.66817 3.94256 4.39971 4.43197 4.51292 4.83517 4.95814 5.08316 5.19511 5.31591 5.35944 5.49781 5.54349 5.70254 5.74317 5.75422 5.95491 6.01537 6.06700 6.23069 6.29230 6.37215 6.41048 6.44679 6.56384 6.65926 6.74130 6.82383 6.91780 7.09516 7.35976 7.39112 7.58649 7.63538 7.74367 8.07907 8.40092 9.16409 9.79916 10.36759 11.24843 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013082 B = 0.003685 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.857807 B = 7597.447048 C = 9150.667668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.149 3.851 3 H 0.089 0.911 4 N -0.712 5.712 5 C 0.568 3.432 6 O -0.520 6.520 7 C -0.257 4.257 8 C 0.200 3.800 9 N -0.527 5.527 10 C 0.338 3.662 11 N -0.545 5.545 12 C 0.418 3.582 13 O -0.455 6.455 14 C -0.112 4.112 15 H 0.072 0.928 16 C -0.101 4.101 17 C -0.142 4.142 18 C 0.169 3.831 19 N -0.591 5.591 20 C -0.254 4.254 21 H 0.065 0.935 22 C 0.004 3.996 23 N -0.901 5.901 24 Si 0.900 3.100 25 H -0.277 1.277 26 H -0.290 1.290 27 H -0.289 1.289 28 C 0.156 3.844 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.399 0.601 33 H 0.177 0.823 34 H 0.206 0.794 35 H 0.415 0.585 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.017 0.983 41 H 0.086 0.914 42 H 0.253 0.747 43 H 0.049 0.951 44 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.705 0.976 -14.037 16.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.045 3.955 3 H 0.107 0.893 4 N -0.363 5.363 5 C 0.352 3.648 6 O -0.397 6.397 7 C -0.267 4.267 8 C 0.034 3.966 9 N -0.242 5.242 10 C 0.051 3.949 11 N -0.270 5.270 12 C 0.229 3.771 13 O -0.263 6.263 14 C -0.133 4.133 15 H 0.091 0.909 16 C -0.139 4.139 17 C -0.181 4.181 18 C 0.043 3.957 19 N -0.313 5.313 20 C -0.384 4.384 21 H 0.083 0.917 22 C -0.195 4.195 23 N -0.545 5.545 24 Si 0.730 3.270 25 H -0.202 1.202 26 H -0.217 1.217 27 H -0.215 1.215 28 C 0.029 3.971 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.234 0.766 33 H 0.194 0.806 34 H 0.223 0.777 35 H 0.277 0.723 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.035 0.965 41 H 0.104 0.896 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -9.024 1.263 -14.836 17.411 hybrid contribution 0.761 -0.663 1.014 1.431 sum -8.263 0.600 -13.822 16.115 Atomic orbital electron populations 1.22209 0.95481 1.01996 1.02345 1.21115 0.93606 0.97580 0.83194 0.89317 1.46005 1.66690 1.14092 1.09510 1.17533 0.78318 0.86564 0.82341 1.90815 1.49473 1.14867 1.84535 1.22115 1.10267 0.97803 0.96487 1.23568 0.86055 0.89872 0.97144 1.68448 1.16215 1.39676 0.99899 1.25089 0.88537 0.85496 0.95742 1.68149 1.15115 1.11421 1.32329 1.19478 0.84883 0.86753 0.85974 1.84628 1.38924 1.11001 1.91784 1.21995 0.99591 0.99267 0.92413 0.90927 1.21440 0.98785 0.99052 0.94606 1.22175 1.00844 0.99358 0.95738 1.20795 0.87446 0.97233 0.90190 1.44041 1.49749 1.38092 0.99460 1.19183 1.11077 1.02104 1.06024 0.91739 1.25041 0.97194 0.97434 0.99836 1.70042 1.37727 1.29304 1.17420 0.86258 0.79119 0.83777 0.77815 1.20234 1.21732 1.21538 1.20857 0.89831 0.96351 0.90091 0.92573 0.92609 0.91096 0.76607 0.80577 0.77725 0.72346 0.92547 0.93059 0.93211 0.92755 0.96493 0.89603 0.93655 0.93227 0.96555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.13 37.16 0.34 -1.55 16 2 C 0.15 1.97 2.16 -67.93 -0.15 1.82 16 3 H 0.09 1.33 7.58 -51.92 -0.39 0.93 16 4 N -0.71 -8.48 4.44 -54.84 -0.24 -8.72 16 5 C 0.57 7.43 7.74 -12.47 -0.10 7.33 16 6 O -0.52 -8.28 14.98 -15.85 -0.24 -8.51 16 7 C -0.26 -2.94 5.92 -104.56 -0.62 -3.56 16 8 C 0.20 1.98 10.81 -16.81 -0.18 1.79 16 9 N -0.53 -5.36 10.42 -14.29 -0.15 -5.51 16 10 C 0.34 3.09 12.27 -92.09 -1.13 1.96 16 11 N -0.55 -6.01 10.45 -14.32 -0.15 -6.16 16 12 C 0.42 4.92 7.85 -16.19 -0.13 4.79 16 13 O -0.46 -5.24 11.81 -38.69 -0.46 -5.69 16 14 C -0.11 -1.70 1.97 -90.50 -0.18 -1.88 16 15 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 16 C -0.10 -1.55 4.85 -26.69 -0.13 -1.68 16 17 C -0.14 -2.55 6.08 -26.61 -0.16 -2.71 16 18 C 0.17 3.88 5.30 -3.71 -0.02 3.86 16 19 N -0.59 -14.04 2.99 -172.32 -0.52 -14.56 16 20 C -0.25 -6.67 9.58 -15.06 -0.14 -6.82 16 21 H 0.06 1.65 7.88 -52.49 -0.41 1.23 16 22 C 0.00 0.10 4.92 -17.43 -0.09 0.02 16 23 N -0.90 -25.59 11.20 55.49 0.62 -24.96 16 24 Si 0.90 21.07 29.59 -169.99 -5.03 16.04 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 28 C 0.16 3.00 5.56 -3.71 -0.02 2.98 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.78 6.40 -51.93 -0.33 0.45 16 32 H 0.40 4.00 6.56 -40.82 -0.27 3.73 16 33 H 0.18 1.31 6.53 -52.49 -0.34 0.97 16 34 H 0.21 1.08 8.06 -52.48 -0.42 0.65 16 35 H 0.41 3.06 9.06 45.56 0.41 3.47 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.67 6.36 -51.93 -0.33 0.34 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 2.23 6.06 -51.93 -0.31 1.91 16 42 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.05 0.91 7.45 -51.93 -0.39 0.53 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 356.70 15.07 5.38 5.38 Total: -1.00 -33.02 356.70 -8.79 -41.81 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -5.31 Total: 4.54 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -2.70 Total: 6.35 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: -0.44 Total: -59.91 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.69 Total: -14.21 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.02 -8.79 -41.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025453448.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.353 kcal (2) G-P(sol) polarization free energy of solvation -33.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds