Wall clock time and date at job start Tue Mar 31 2020 12:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.47375 * 2 1 4 4 N 1.46500 * 109.47463 * 119.99968 * 2 1 3 5 5 C 1.34775 * 120.00107 * 275.00059 * 4 2 1 6 6 O 1.21597 * 120.00153 * 0.02562 * 5 4 2 7 7 C 1.47576 * 120.00317 * 179.97438 * 5 4 2 8 8 C 1.38046 * 119.73108 * 180.02562 * 7 5 4 9 9 N 1.34876 * 119.94731 * 180.02562 * 8 7 5 10 10 H 0.97002 * 120.30219 * 179.97438 * 9 8 7 11 11 C 1.34953 * 119.38670 * 359.97438 * 9 8 7 12 12 O 1.21864 * 120.27103 * 180.02562 * 11 9 8 13 13 C 1.41783 * 119.46168 * 359.97438 * 11 9 8 14 14 N 1.30611 * 120.02861 * 0.02562 * 13 11 9 15 15 C 1.52999 * 109.47373 * 239.99910 * 2 1 3 16 16 H 1.09000 * 109.49989 * 184.93308 * 15 2 1 17 17 C 1.53050 * 109.49412 * 64.83914 * 15 2 1 18 18 C 1.53038 * 109.53327 * 178.68756 * 17 15 2 19 19 C 1.53190 * 109.32044 * 61.36287 * 18 17 15 20 20 N 1.46928 * 108.77053 * 305.36429 * 19 18 17 21 21 C 1.36939 * 120.62541 * 233.58056 * 20 19 18 22 22 H 1.08002 * 119.99394 * 152.31394 * 21 20 19 23 23 C 1.38805 * 120.00315 * 332.31021 * 21 20 19 24 24 N 1.31622 * 119.99987 * 342.59899 * 23 21 20 25 25 Si 1.86801 * 120.00127 * 162.59908 * 23 21 20 26 26 H 1.48508 * 109.47053 * 94.34708 * 25 23 21 27 27 H 1.48500 * 109.47172 * 214.34977 * 25 23 21 28 28 H 1.48503 * 109.47148 * 334.35054 * 25 23 21 29 29 C 1.46924 * 118.74010 * 53.60862 * 20 19 18 30 30 H 1.09002 * 109.47052 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47225 * 299.99462 * 1 2 3 32 32 H 1.08999 * 109.47374 * 59.99836 * 1 2 3 33 33 H 0.97003 * 120.00235 * 95.00170 * 4 2 1 34 34 H 1.07998 * 120.02349 * 0.02775 * 8 7 5 35 35 H 1.07993 * 119.98506 * 180.29696 * 13 11 9 36 36 H 1.08999 * 109.45840 * 298.70278 * 17 15 2 37 37 H 1.08993 * 109.45934 * 58.66450 * 17 15 2 38 38 H 1.08999 * 109.49878 * 301.40397 * 18 17 15 39 39 H 1.09006 * 109.51788 * 181.33323 * 18 17 15 40 40 H 1.08993 * 109.58758 * 185.57304 * 19 18 17 41 41 H 1.09005 * 109.69966 * 65.21669 * 19 18 17 42 42 H 0.96999 * 119.99681 * 180.02562 * 24 23 21 43 43 H 1.09003 * 109.58719 * 186.59986 * 29 20 19 44 44 H 1.09000 * 109.58987 * 66.17590 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.8574 1.1614 2.4119 7 6 2.6385 -0.7140 3.5622 8 6 2.7678 -0.0200 4.7485 9 7 3.2170 -0.6515 5.8525 10 1 3.3101 -0.1687 6.6887 11 6 3.5357 -1.9610 5.7828 12 8 3.9427 -2.5475 6.7705 13 6 3.3921 -2.6491 4.5515 14 7 2.9550 -2.0160 3.4960 15 6 2.0400 -0.7213 -1.2492 16 1 3.1264 -0.7987 -1.2066 17 6 1.6319 0.0666 -2.4963 18 6 2.1697 -0.6366 -3.7445 19 6 1.5608 -2.0392 -3.8380 20 7 1.8249 -2.7540 -2.5818 21 6 2.4276 -3.9836 -2.5922 22 1 3.0120 -4.3056 -1.7430 23 6 2.2873 -4.8160 -3.6941 24 7 1.3257 -4.5974 -4.5659 25 14 3.4631 -6.2466 -3.9397 26 1 2.8708 -7.4792 -3.3607 27 1 3.7023 -6.4471 -5.3915 28 1 4.7510 -5.9508 -3.2620 29 6 1.4295 -2.1247 -1.3144 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 2.2491 -1.6318 1.1526 34 1 2.5093 1.0276 4.7926 35 1 3.6401 -3.6982 4.4874 36 1 0.5447 0.1224 -2.5509 37 1 2.0447 1.0738 -2.4406 38 1 3.2549 -0.7148 -3.6790 39 1 1.8992 -0.0627 -4.6309 40 1 2.0145 -2.5799 -4.6685 41 1 0.4849 -1.9629 -3.9959 42 1 1.2275 -5.1793 -5.3357 43 1 1.7967 -2.7220 -0.4797 44 1 0.3430 -2.0533 -1.2651 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025518522.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:39 Heat of formation + Delta-G solvation = -11.965170 kcal Electronic energy + Delta-G solvation = -27117.365587 eV Core-core repulsion = 23263.649285 eV Total energy + Delta-G solvation = -3853.716302 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.13718 -39.90415 -38.25832 -37.59847 -35.70671 -35.16246 -32.99969 -31.41125 -30.43245 -30.37216 -28.06542 -25.87098 -25.28692 -25.15474 -23.72174 -22.26177 -21.61443 -20.31619 -19.42144 -18.82051 -18.51301 -17.43828 -16.71670 -16.44295 -16.23484 -15.87392 -15.10388 -14.99218 -14.86877 -14.50326 -14.35697 -13.88428 -13.64835 -13.42527 -13.14315 -12.91231 -12.44768 -12.35090 -12.25623 -12.20432 -11.91725 -11.79019 -11.62781 -10.98781 -10.89207 -10.56490 -10.45359 -10.34424 -10.17692 -10.06441 -9.85347 -9.80664 -9.58283 -9.37666 -9.01128 -8.65732 -8.44056 -6.64457 -5.77461 -3.19166 0.05140 0.84961 2.04737 2.59973 3.10790 3.38403 3.41039 3.46010 3.48389 3.74634 3.80872 4.31327 4.50309 4.57658 4.85924 5.05760 5.23628 5.41399 5.44110 5.48431 5.59534 5.69857 5.69929 5.72853 5.86615 5.90063 6.02959 6.12993 6.24189 6.26376 6.36029 6.50408 6.61311 6.63368 6.71808 6.80251 6.88213 7.00312 7.04925 7.22925 7.41789 7.62081 7.69210 7.81305 8.17889 8.46342 9.22868 9.86646 10.43008 11.30906 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013179 B = 0.003421 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.024684 B = 8183.429814 C = 9989.736824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.149 3.851 3 H 0.083 0.917 4 N -0.698 5.698 5 C 0.587 3.413 6 O -0.552 6.552 7 C -0.074 4.074 8 C 0.172 3.828 9 N -0.587 5.587 10 H 0.425 0.575 11 C 0.477 3.523 12 O -0.522 6.522 13 C 0.046 3.954 14 N -0.369 5.369 15 C -0.113 4.113 16 H 0.073 0.927 17 C -0.100 4.100 18 C -0.142 4.142 19 C 0.169 3.831 20 N -0.591 5.591 21 C -0.252 4.252 22 H 0.065 0.935 23 C 0.003 3.997 24 N -0.902 5.902 25 Si 0.900 3.100 26 H -0.288 1.288 27 H -0.290 1.290 28 H -0.279 1.279 29 C 0.150 3.850 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.413 0.587 34 H 0.190 0.810 35 H 0.196 0.804 36 H 0.059 0.941 37 H 0.046 0.954 38 H 0.053 0.947 39 H 0.049 0.951 40 H 0.086 0.914 41 H 0.017 0.983 42 H 0.253 0.747 43 H 0.049 0.951 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.371 11.441 16.011 19.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.045 3.955 3 H 0.101 0.899 4 N -0.348 5.348 5 C 0.372 3.628 6 O -0.431 6.431 7 C -0.197 4.197 8 C 0.036 3.964 9 N -0.220 5.220 10 H 0.265 0.735 11 C 0.273 3.727 12 O -0.397 6.397 13 C -0.145 4.145 14 N -0.084 5.084 15 C -0.134 4.134 16 H 0.091 0.909 17 C -0.138 4.138 18 C -0.181 4.181 19 C 0.043 3.957 20 N -0.313 5.313 21 C -0.382 4.382 22 H 0.083 0.917 23 C -0.196 4.196 24 N -0.547 5.547 25 Si 0.729 3.271 26 H -0.215 1.215 27 H -0.216 1.216 28 H -0.204 1.204 29 C 0.024 3.976 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.250 0.750 34 H 0.207 0.793 35 H 0.213 0.787 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.104 0.896 41 H 0.035 0.965 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 1.224 11.442 15.554 19.348 hybrid contribution 0.801 -0.566 0.909 1.337 sum 2.025 10.877 16.463 19.835 Atomic orbital electron populations 1.22262 0.95253 1.02880 1.01910 1.21106 0.94292 0.96731 0.83415 0.89862 1.45985 1.64817 1.15083 1.08869 1.17187 0.77609 0.85680 0.82301 1.90790 1.52331 1.15054 1.84918 1.20527 1.13521 0.90979 0.94698 1.23211 0.87863 1.00105 0.85244 1.43689 1.52566 1.12521 1.13229 0.73522 1.18831 0.80232 0.81268 0.92397 1.91012 1.45810 1.65148 1.37753 1.24812 1.01575 1.02104 0.86021 1.67743 1.02349 1.07363 1.30968 1.21961 1.01007 0.98100 0.92336 0.90892 1.21419 1.00504 0.97174 0.94704 1.22176 1.00615 0.99594 0.95759 1.20789 0.96595 0.88021 0.90252 1.44026 1.69763 1.17603 0.99906 1.19178 1.23450 0.92154 1.03386 0.91693 1.25009 0.97436 0.97633 0.99501 1.70043 1.30271 1.39675 1.14672 0.86326 0.81100 0.82492 0.77134 1.21474 1.21624 1.20423 1.21005 0.96143 0.90359 0.90110 0.91469 0.92889 0.91298 0.74957 0.79259 0.78720 0.92227 0.93553 0.92806 0.93259 0.89609 0.96470 0.93704 0.93216 0.95680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 8.76 37.15 0.33 -1.88 16 2 C 0.15 2.08 2.35 -67.94 -0.16 1.92 16 3 H 0.08 1.19 7.58 -51.93 -0.39 0.80 16 4 N -0.70 -9.28 5.00 -54.84 -0.27 -9.55 16 5 C 0.59 7.49 7.75 -12.45 -0.10 7.39 16 6 O -0.55 -7.98 15.94 5.28 0.08 -7.89 16 7 C -0.07 -0.76 6.71 -83.11 -0.56 -1.32 16 8 C 0.17 1.18 10.77 -16.28 -0.18 1.00 16 9 N -0.59 -3.62 5.28 -14.20 -0.08 -3.70 16 10 H 0.42 1.35 8.92 -40.82 -0.36 0.99 16 11 C 0.48 4.48 7.74 -14.83 -0.11 4.37 16 12 O -0.52 -6.53 17.95 5.04 0.09 -6.44 16 13 C 0.05 0.43 11.23 -16.72 -0.19 0.24 16 14 N -0.37 -3.97 9.62 -9.34 -0.09 -4.06 16 15 C -0.11 -1.83 2.27 -90.50 -0.21 -2.04 16 16 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 17 C -0.10 -1.59 4.89 -26.69 -0.13 -1.72 16 18 C -0.14 -2.63 6.08 -26.61 -0.16 -2.79 16 19 C 0.17 3.93 5.31 -3.71 -0.02 3.91 16 20 N -0.59 -14.26 2.99 -172.32 -0.52 -14.78 16 21 C -0.25 -6.75 9.58 -15.06 -0.14 -6.89 16 22 H 0.07 1.70 7.89 -52.49 -0.41 1.29 16 23 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 24 N -0.90 -25.83 11.19 55.49 0.62 -25.20 16 25 Si 0.90 21.41 29.59 -169.99 -5.03 16.39 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 29 C 0.15 2.93 5.26 -3.71 -0.02 2.91 16 30 H 0.07 0.95 6.23 -51.93 -0.32 0.62 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.88 6.59 -51.93 -0.34 0.54 16 33 H 0.41 5.57 6.59 -40.82 -0.27 5.30 16 34 H 0.19 0.84 7.58 -52.49 -0.40 0.44 16 35 H 0.20 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.06 0.93 6.62 -51.93 -0.34 0.59 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 2.25 6.04 -51.93 -0.31 1.94 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.05 0.95 6.75 -51.93 -0.35 0.60 16 44 H 0.03 0.50 6.06 -51.93 -0.31 0.19 16 LS Contribution 354.58 15.07 5.34 5.34 Total: -1.00 -33.12 354.58 -7.50 -40.62 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -5.92 Total: 4.19 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -1.73 Total: 5.09 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: -0.33 Total: -57.29 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: 0.17 Total: -14.34 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.12 -7.50 -40.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025518522.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.651 kcal (2) G-P(sol) polarization free energy of solvation -33.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds