Wall clock time and date at job start Tue Mar 31 2020 12:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.47375 * 2 1 4 4 N 1.46500 * 109.47463 * 119.99968 * 2 1 3 5 5 C 1.34775 * 120.00107 * 275.00059 * 4 2 1 6 6 O 1.21597 * 120.00153 * 0.02562 * 5 4 2 7 7 C 1.47576 * 120.00317 * 179.97438 * 5 4 2 8 8 C 1.38046 * 119.73108 * 180.02562 * 7 5 4 9 9 N 1.34876 * 119.94731 * 180.02562 * 8 7 5 10 10 H 0.97002 * 120.30219 * 179.97438 * 9 8 7 11 11 C 1.34953 * 119.38670 * 359.97438 * 9 8 7 12 12 O 1.21864 * 120.27103 * 180.02562 * 11 9 8 13 13 C 1.41783 * 119.46168 * 359.97438 * 11 9 8 14 14 N 1.30611 * 120.02861 * 0.02562 * 13 11 9 15 15 C 1.52999 * 109.47373 * 239.99910 * 2 1 3 16 16 H 1.09000 * 109.49989 * 184.93308 * 15 2 1 17 17 C 1.53050 * 109.49412 * 64.83914 * 15 2 1 18 18 C 1.53038 * 109.53327 * 178.68756 * 17 15 2 19 19 C 1.53190 * 109.32044 * 61.36287 * 18 17 15 20 20 N 1.46928 * 108.77053 * 305.36429 * 19 18 17 21 21 C 1.36939 * 120.62541 * 233.58056 * 20 19 18 22 22 H 1.08002 * 119.99394 * 152.31394 * 21 20 19 23 23 C 1.38805 * 120.00315 * 332.31021 * 21 20 19 24 24 N 1.31622 * 119.99987 * 342.59899 * 23 21 20 25 25 Si 1.86801 * 120.00127 * 162.59908 * 23 21 20 26 26 H 1.48508 * 109.47053 * 94.34708 * 25 23 21 27 27 H 1.48500 * 109.47172 * 214.34977 * 25 23 21 28 28 H 1.48503 * 109.47148 * 334.35054 * 25 23 21 29 29 C 1.46924 * 118.74010 * 53.60862 * 20 19 18 30 30 H 1.09002 * 109.47052 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47225 * 299.99462 * 1 2 3 32 32 H 1.08999 * 109.47374 * 59.99836 * 1 2 3 33 33 H 0.97003 * 120.00235 * 95.00170 * 4 2 1 34 34 H 1.07998 * 120.02349 * 0.02775 * 8 7 5 35 35 H 1.07993 * 119.98506 * 180.29696 * 13 11 9 36 36 H 1.08999 * 109.45840 * 298.70278 * 17 15 2 37 37 H 1.08993 * 109.45934 * 58.66450 * 17 15 2 38 38 H 1.08999 * 109.49878 * 301.40397 * 18 17 15 39 39 H 1.09006 * 109.51788 * 181.33323 * 18 17 15 40 40 H 1.08993 * 109.58758 * 185.57304 * 19 18 17 41 41 H 1.09005 * 109.69966 * 65.21669 * 19 18 17 42 42 H 0.96999 * 119.99681 * 180.02562 * 24 23 21 43 43 H 1.09003 * 109.58719 * 186.59986 * 29 20 19 44 44 H 1.09000 * 109.58987 * 66.17590 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.8574 1.1614 2.4119 7 6 2.6385 -0.7140 3.5622 8 6 2.7678 -0.0200 4.7485 9 7 3.2170 -0.6515 5.8525 10 1 3.3101 -0.1687 6.6887 11 6 3.5357 -1.9610 5.7828 12 8 3.9427 -2.5475 6.7705 13 6 3.3921 -2.6491 4.5515 14 7 2.9550 -2.0160 3.4960 15 6 2.0400 -0.7213 -1.2492 16 1 3.1264 -0.7987 -1.2066 17 6 1.6319 0.0666 -2.4963 18 6 2.1697 -0.6366 -3.7445 19 6 1.5608 -2.0392 -3.8380 20 7 1.8249 -2.7540 -2.5818 21 6 2.4276 -3.9836 -2.5922 22 1 3.0120 -4.3056 -1.7430 23 6 2.2873 -4.8160 -3.6941 24 7 1.3257 -4.5974 -4.5659 25 14 3.4631 -6.2466 -3.9397 26 1 2.8708 -7.4792 -3.3607 27 1 3.7023 -6.4471 -5.3915 28 1 4.7510 -5.9508 -3.2620 29 6 1.4295 -2.1247 -1.3144 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 2.2491 -1.6318 1.1526 34 1 2.5093 1.0276 4.7926 35 1 3.6401 -3.6982 4.4874 36 1 0.5447 0.1224 -2.5509 37 1 2.0447 1.0738 -2.4406 38 1 3.2549 -0.7148 -3.6790 39 1 1.8992 -0.0627 -4.6309 40 1 2.0145 -2.5799 -4.6685 41 1 0.4849 -1.9629 -3.9959 42 1 1.2275 -5.1793 -5.3357 43 1 1.7967 -2.7220 -0.4797 44 1 0.3430 -2.0533 -1.2651 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025518522.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:38 Heat of formation + Delta-G solvation = -36.250752 kcal Electronic energy + Delta-G solvation = -27118.418689 eV Core-core repulsion = 23263.649285 eV Total energy + Delta-G solvation = -3854.769404 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.86066 -40.96010 -39.52966 -38.55480 -36.67778 -36.32135 -34.60800 -32.62270 -32.22646 -31.33382 -29.39809 -27.18515 -26.56582 -26.05471 -24.87488 -23.85975 -22.81783 -21.62861 -20.40883 -19.89596 -19.47831 -18.66123 -18.15298 -17.19263 -17.14895 -16.94104 -16.72895 -16.08630 -15.81644 -15.71683 -15.63445 -15.29653 -15.00311 -14.66625 -14.51624 -14.07390 -13.91529 -13.85261 -13.46031 -13.25469 -12.99823 -12.90428 -12.73857 -12.73219 -12.65371 -12.25612 -11.99733 -11.92407 -11.66084 -11.46854 -11.33382 -11.11612 -11.00352 -10.56709 -10.48063 -10.06514 -9.42201 -8.61021 -7.83242 -5.27146 -0.58086 0.05388 1.41696 1.48031 1.50121 1.59567 1.73506 2.19420 2.54202 2.61319 3.01624 3.10371 3.31498 3.61811 3.68253 3.87464 3.97920 4.04649 4.11475 4.22035 4.40413 4.47337 4.52612 4.71090 4.74641 4.78278 4.91219 4.95514 5.02911 5.09932 5.16317 5.19192 5.24817 5.27027 5.35316 5.40293 5.52583 5.56849 5.63043 5.72490 5.84070 6.31624 6.43456 6.49511 6.65958 7.18040 7.19833 7.92232 8.42984 9.22772 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013179 B = 0.003421 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.024684 B = 8183.429814 C = 9989.736824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.159 3.841 3 H 0.089 0.911 4 N -0.703 5.703 5 C 0.590 3.410 6 O -0.570 6.570 7 C -0.104 4.104 8 C 0.211 3.789 9 N -0.567 5.567 10 H 0.443 0.557 11 C 0.480 3.520 12 O -0.556 6.556 13 C 0.035 3.965 14 N -0.385 5.385 15 C -0.098 4.098 16 H 0.064 0.936 17 C -0.096 4.096 18 C -0.132 4.132 19 C 0.173 3.827 20 N -0.609 5.609 21 C -0.259 4.259 22 H 0.066 0.934 23 C -0.050 4.050 24 N -0.934 5.934 25 Si 0.961 3.039 26 H -0.287 1.287 27 H -0.294 1.294 28 H -0.270 1.270 29 C 0.151 3.849 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.411 0.589 34 H 0.223 0.777 35 H 0.206 0.794 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.047 0.953 39 H 0.069 0.931 40 H 0.049 0.951 41 H -0.004 1.004 42 H 0.248 0.752 43 H 0.048 0.952 44 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.912 13.332 17.688 22.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.054 3.946 3 H 0.107 0.893 4 N -0.353 5.353 5 C 0.376 3.624 6 O -0.450 6.450 7 C -0.228 4.228 8 C 0.073 3.927 9 N -0.200 5.200 10 H 0.287 0.713 11 C 0.276 3.724 12 O -0.433 6.433 13 C -0.155 4.155 14 N -0.100 5.100 15 C -0.119 4.119 16 H 0.082 0.918 17 C -0.134 4.134 18 C -0.171 4.171 19 C 0.048 3.952 20 N -0.332 5.332 21 C -0.390 4.390 22 H 0.084 0.916 23 C -0.245 4.245 24 N -0.581 5.581 25 Si 0.790 3.210 26 H -0.213 1.213 27 H -0.220 1.220 28 H -0.195 1.195 29 C 0.025 3.975 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.248 0.752 34 H 0.240 0.760 35 H 0.223 0.777 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.014 0.986 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 1.772 13.364 17.278 21.915 hybrid contribution 0.597 -1.096 0.452 1.327 sum 2.369 12.268 17.730 21.690 Atomic orbital electron populations 1.22207 0.94735 1.02267 1.02518 1.20930 0.94522 0.96489 0.82640 0.89272 1.45988 1.65184 1.14990 1.09110 1.17409 0.76932 0.85468 0.82570 1.90773 1.53263 1.15703 1.85290 1.20307 1.16097 0.91265 0.95092 1.23505 0.84535 1.00783 0.83897 1.43560 1.50822 1.11686 1.13943 0.71342 1.18800 0.79720 0.82047 0.91812 1.91002 1.47485 1.66136 1.38721 1.24945 1.01996 1.02710 0.85801 1.67663 1.02740 1.07931 1.31698 1.21736 1.00101 0.96089 0.93958 0.91803 1.21411 1.00928 0.98202 0.92879 1.22012 0.99859 0.96924 0.98258 1.20621 0.95255 0.90320 0.89025 1.44290 1.69989 1.17358 1.01601 1.19510 1.23104 0.93078 1.03275 0.91597 1.25715 0.98927 1.00260 0.99604 1.70191 1.31952 1.40799 1.15136 0.85354 0.79468 0.79613 0.76582 1.21347 1.22049 1.19503 1.21114 0.96157 0.92117 0.88070 0.92640 0.92471 0.90484 0.75212 0.76028 0.77738 0.91675 0.90436 0.93381 0.91221 0.93244 0.98567 0.94259 0.93305 0.95896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 8.76 71.98 0.63 -3.34 16 2 C 0.16 4.13 2.35 44.99 0.11 4.24 16 3 H 0.09 2.29 7.58 -2.39 -0.02 2.28 16 4 N -0.70 -17.80 5.00 -445.67 -2.23 -20.03 16 5 C 0.59 13.93 7.75 86.71 0.67 14.61 16 6 O -0.57 -15.04 15.94 -4.02 -0.06 -15.11 16 7 C -0.10 -1.94 6.71 41.21 0.28 -1.67 16 8 C 0.21 2.21 10.77 84.18 0.91 3.11 16 9 N -0.57 -5.39 5.28 -316.88 -1.67 -7.06 16 10 H 0.44 1.34 8.92 -92.71 -0.83 0.52 16 11 C 0.48 8.27 7.74 85.09 0.66 8.93 16 12 O -0.56 -13.34 17.95 -4.87 -0.09 -13.43 16 13 C 0.04 0.63 11.23 85.75 0.96 1.59 16 14 N -0.39 -7.88 9.62 -183.47 -1.77 -9.65 16 15 C -0.10 -3.04 2.27 -10.71 -0.02 -3.06 16 16 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 17 C -0.10 -2.86 4.89 30.62 0.15 -2.71 16 18 C -0.13 -4.74 6.08 30.67 0.19 -4.55 16 19 C 0.17 8.24 5.31 86.36 0.46 8.70 16 20 N -0.61 -29.87 2.99 -699.11 -2.09 -31.96 16 21 C -0.26 -14.11 9.58 84.03 0.81 -13.30 16 22 H 0.07 3.49 7.89 -2.91 -0.02 3.47 16 23 C -0.05 -2.77 4.91 84.86 0.42 -2.36 16 24 N -0.93 -55.17 11.19 21.65 0.24 -54.92 16 25 Si 0.96 44.80 29.59 68.60 2.03 46.83 16 26 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 27 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 28 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 29 C 0.15 5.87 5.26 86.36 0.45 6.32 16 30 H 0.05 1.51 6.23 -2.39 -0.01 1.49 16 31 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 1.79 6.59 -2.39 -0.02 1.77 16 33 H 0.41 10.83 6.59 -92.71 -0.61 10.22 16 34 H 0.22 0.96 7.58 -2.91 -0.02 0.94 16 35 H 0.21 2.97 8.06 -2.91 -0.02 2.95 16 36 H 0.06 1.89 6.62 -2.39 -0.02 1.87 16 37 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 40 H 0.05 2.69 6.04 -2.39 -0.01 2.68 16 41 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 42 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 43 H 0.05 1.87 6.75 -2.39 -0.02 1.86 16 44 H 0.02 0.92 6.06 -2.39 -0.01 0.90 16 Total: -1.00 -72.87 354.58 0.64 -72.24 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -0.38 Total: 16.59 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: 6.66 Total: 16.50 kcal Atomic # 7 Polarization: -116.10 SS G_CDS: -7.52 Total: -123.62 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -0.15 Total: -28.54 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -72.87 0.64 -72.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025518522.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.986 kcal (2) G-P(sol) polarization free energy of solvation -72.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds