Wall clock time and date at job start Tue Mar 31 2020 12:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.47033 * 2 1 4 4 N 1.46491 * 109.46896 * 120.00081 * 2 1 3 5 5 C 1.34777 * 120.00331 * 274.99638 * 4 2 1 6 6 O 1.21593 * 119.99900 * 0.02562 * 5 4 2 7 7 C 1.47584 * 120.00182 * 179.72661 * 5 4 2 8 8 C 1.38050 * 119.72453 * 180.27922 * 7 5 4 9 9 N 1.34880 * 119.94541 * 180.02562 * 8 7 5 10 10 H 0.96999 * 120.30651 * 180.02562 * 9 8 7 11 11 C 1.34950 * 119.38188 * 359.97438 * 9 8 7 12 12 O 1.21866 * 120.26578 * 180.02562 * 11 9 8 13 13 C 1.41787 * 119.46599 * 0.02562 * 11 9 8 14 14 N 1.30617 * 120.02715 * 359.72095 * 13 11 9 15 15 C 1.53004 * 109.46810 * 240.00164 * 2 1 3 16 16 H 1.08995 * 109.49761 * 299.93419 * 15 2 1 17 17 C 1.53040 * 109.49815 * 60.00143 * 15 2 1 18 18 C 1.53037 * 109.53435 * 181.31513 * 17 15 2 19 19 C 1.53189 * 109.31670 * 298.63250 * 18 17 15 20 20 N 1.46934 * 108.77214 * 54.63615 * 19 18 17 21 21 C 1.36933 * 120.62653 * 126.42098 * 20 19 18 22 22 H 1.08012 * 119.99396 * 207.67168 * 21 20 19 23 23 C 1.38807 * 120.00647 * 27.66290 * 21 20 19 24 24 N 1.31620 * 119.99883 * 17.37105 * 23 21 20 25 25 Si 1.86799 * 120.00190 * 197.37073 * 23 21 20 26 26 H 1.48499 * 109.47482 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47410 * 120.00080 * 25 23 21 28 28 H 1.48507 * 109.47117 * 240.00196 * 25 23 21 29 29 C 1.46925 * 118.73993 * 306.38996 * 20 19 18 30 30 H 1.08998 * 109.46775 * 299.99736 * 1 2 3 31 31 H 1.08999 * 109.46948 * 59.99770 * 1 2 3 32 32 H 1.09003 * 109.47033 * 180.02562 * 1 2 3 33 33 H 0.97005 * 120.00214 * 95.00025 * 4 2 1 34 34 H 1.08000 * 120.02484 * 359.97111 * 8 7 5 35 35 H 1.07996 * 119.98674 * 180.02562 * 13 11 9 36 36 H 1.08997 * 109.45769 * 301.33256 * 17 15 2 37 37 H 1.08997 * 109.45730 * 61.31003 * 17 15 2 38 38 H 1.08997 * 109.49779 * 58.58738 * 18 17 15 39 39 H 1.09004 * 109.49634 * 178.65005 * 18 17 15 40 40 H 1.08993 * 109.59108 * 174.42155 * 19 18 17 41 41 H 1.08999 * 109.58873 * 294.85629 * 19 18 17 42 42 H 0.97003 * 120.00232 * 179.97438 * 24 23 21 43 43 H 1.08991 * 109.58889 * 293.82832 * 29 20 19 44 44 H 1.09000 * 109.58630 * 173.39157 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8576 1.1614 2.4119 7 6 2.6333 -0.7155 3.5636 8 6 2.7575 -0.0228 4.7512 9 7 3.2019 -0.6554 5.8564 10 1 3.2908 -0.1739 6.6937 11 6 3.5206 -1.9649 5.7867 12 8 3.9232 -2.5526 6.7755 13 6 3.3832 -2.6515 4.5538 14 7 2.9461 -2.0184 3.4983 15 6 2.0400 -0.7212 -1.2493 16 1 1.6779 -1.7493 -1.2492 17 6 1.5302 -0.0002 -2.4993 18 6 2.0126 -0.7398 -3.7492 19 6 3.5442 -0.7369 -3.7803 20 7 4.0438 -1.2971 -2.5171 21 6 4.9328 -2.3386 -2.5192 22 1 4.9619 -3.0254 -1.6860 23 6 5.7964 -2.5120 -3.5920 24 7 6.0120 -1.5204 -4.4302 25 14 6.6525 -4.1527 -3.8462 26 1 6.2446 -5.0954 -2.7738 27 1 6.2704 -4.7109 -5.1682 28 1 8.1237 -3.9560 -3.7984 29 6 3.5720 -0.7181 -1.2519 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6318 1.1526 34 1 2.4999 1.0252 4.7950 35 1 3.6354 -3.6996 4.4886 36 1 0.4405 0.0205 -2.4874 37 1 1.9128 1.0203 -2.5111 38 1 1.6511 -1.7679 -3.7258 39 1 1.6293 -0.2396 -4.6386 40 1 3.8939 -1.3460 -4.6137 41 1 3.9054 0.2851 -3.8948 42 1 6.6158 -1.6414 -5.1797 43 1 3.9353 0.3054 -1.1605 44 1 3.9400 -1.3148 -0.4173 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025518523.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:42 Heat of formation + Delta-G solvation = -14.299925 kcal Electronic energy + Delta-G solvation = -27135.622286 eV Core-core repulsion = 23281.804742 eV Total energy + Delta-G solvation = -3853.817544 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.11292 -39.85954 -38.16957 -37.55141 -35.68827 -35.20269 -32.99649 -31.38170 -30.53499 -30.24055 -28.45402 -25.85327 -25.33938 -24.91634 -23.43825 -21.97892 -21.58888 -20.36180 -19.65295 -18.83915 -18.75844 -17.39005 -16.72842 -16.41336 -16.22951 -15.91350 -15.12156 -14.98229 -14.75029 -14.48380 -14.26073 -13.74693 -13.56203 -13.38625 -13.15840 -12.96337 -12.54921 -12.44255 -12.23366 -12.19124 -11.90033 -11.79149 -11.52283 -11.09162 -10.95988 -10.65610 -10.39822 -10.31313 -10.15048 -10.12337 -9.87819 -9.80344 -9.53568 -9.40134 -8.98035 -8.63476 -8.44274 -6.64637 -5.76682 -3.18729 0.07623 0.87364 2.07270 2.62686 3.12136 3.38320 3.43796 3.46480 3.48501 3.76518 3.83138 4.33617 4.50126 4.60007 4.86941 4.99713 5.27125 5.39244 5.43554 5.49341 5.57908 5.62005 5.72284 5.78516 5.81878 5.92003 6.03429 6.09208 6.13280 6.31610 6.37040 6.44655 6.56693 6.64273 6.72756 6.83426 6.89558 7.00423 7.06783 7.24841 7.42515 7.62772 7.69926 7.82033 8.20235 8.47030 9.23611 9.87354 10.43943 11.31652 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012110 B = 0.003596 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.677659 B = 7785.154772 C = 9634.126714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 H 0.088 0.912 4 N -0.696 5.696 5 C 0.589 3.411 6 O -0.550 6.550 7 C -0.073 4.073 8 C 0.172 3.828 9 N -0.587 5.587 10 H 0.425 0.575 11 C 0.478 3.522 12 O -0.523 6.523 13 C 0.045 3.955 14 N -0.369 5.369 15 C -0.111 4.111 16 H 0.073 0.927 17 C -0.101 4.101 18 C -0.142 4.142 19 C 0.169 3.831 20 N -0.591 5.591 21 C -0.251 4.251 22 H 0.066 0.934 23 C 0.002 3.998 24 N -0.902 5.902 25 Si 0.900 3.100 26 H -0.277 1.277 27 H -0.289 1.289 28 H -0.291 1.291 29 C 0.155 3.845 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.412 0.588 34 H 0.191 0.809 35 H 0.195 0.805 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.086 0.914 41 H 0.016 0.984 42 H 0.252 0.748 43 H 0.016 0.984 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.879 3.484 15.748 19.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.042 3.958 3 H 0.106 0.894 4 N -0.346 5.346 5 C 0.374 3.626 6 O -0.429 6.429 7 C -0.197 4.197 8 C 0.036 3.964 9 N -0.220 5.220 10 H 0.265 0.735 11 C 0.273 3.727 12 O -0.398 6.398 13 C -0.146 4.146 14 N -0.084 5.084 15 C -0.132 4.132 16 H 0.091 0.909 17 C -0.139 4.139 18 C -0.181 4.181 19 C 0.043 3.957 20 N -0.314 5.314 21 C -0.380 4.380 22 H 0.084 0.916 23 C -0.197 4.197 24 N -0.547 5.547 25 Si 0.730 3.270 26 H -0.202 1.202 27 H -0.216 1.216 28 H -0.218 1.218 29 C 0.028 3.972 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.248 0.752 34 H 0.208 0.792 35 H 0.212 0.788 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.104 0.896 41 H 0.035 0.965 42 H 0.063 0.937 43 H 0.034 0.966 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.857 3.602 15.310 19.111 hybrid contribution 0.782 -0.581 0.889 1.319 sum -10.075 3.021 16.199 19.314 Atomic orbital electron populations 1.22205 0.95555 1.02000 1.02173 1.21127 0.93564 0.97552 0.83521 0.89427 1.45872 1.64987 1.14876 1.08822 1.17160 0.77545 0.85669 0.82272 1.90794 1.52150 1.14988 1.84944 1.20515 1.13587 0.90943 0.94613 1.23220 0.87814 1.00086 0.85251 1.43685 1.52631 1.12515 1.13140 0.73511 1.18822 0.80181 0.81275 0.92433 1.91010 1.45909 1.65118 1.37760 1.24788 1.01657 1.02102 0.86054 1.67724 1.02419 1.07424 1.30845 1.21977 0.99606 0.99297 0.92316 0.90900 1.21442 0.98720 0.99023 0.94683 1.22174 1.00864 0.99364 0.95713 1.20797 0.87454 0.97205 0.90254 1.44054 1.49693 1.38106 0.99500 1.19223 1.11127 1.02167 1.05500 0.91642 1.25018 0.97302 0.97453 0.99881 1.70053 1.38089 1.29319 1.17241 0.86259 0.79020 0.83954 0.77777 1.20213 1.21596 1.21805 1.20866 0.89845 0.96333 0.90110 0.92665 0.91188 0.92581 0.75205 0.79236 0.78788 0.93113 0.92597 0.92762 0.93272 0.89575 0.96547 0.93747 0.96637 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.13 37.16 0.34 -1.57 16 2 C 0.15 2.03 2.16 -67.93 -0.15 1.88 16 3 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 4 N -0.70 -9.15 4.47 -54.83 -0.24 -9.40 16 5 C 0.59 7.64 7.75 -12.45 -0.10 7.54 16 6 O -0.55 -8.17 15.94 5.28 0.08 -8.09 16 7 C -0.07 -0.77 6.71 -83.11 -0.56 -1.33 16 8 C 0.17 1.24 10.77 -16.28 -0.18 1.07 16 9 N -0.59 -3.81 5.28 -14.19 -0.08 -3.89 16 10 H 0.42 1.50 8.92 -40.82 -0.36 1.14 16 11 C 0.48 4.60 7.74 -14.83 -0.11 4.48 16 12 O -0.52 -6.65 17.95 5.04 0.09 -6.56 16 13 C 0.04 0.42 11.23 -16.71 -0.19 0.23 16 14 N -0.37 -3.97 9.62 -9.34 -0.09 -4.06 16 15 C -0.11 -1.79 1.97 -90.50 -0.18 -1.96 16 16 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 17 C -0.10 -1.60 4.85 -26.69 -0.13 -1.73 16 18 C -0.14 -2.62 6.08 -26.61 -0.16 -2.78 16 19 C 0.17 3.97 5.31 -3.71 -0.02 3.95 16 20 N -0.59 -14.53 2.99 -172.32 -0.52 -15.05 16 21 C -0.25 -6.79 9.58 -15.06 -0.14 -6.93 16 22 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 23 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 24 N -0.90 -26.12 11.19 55.49 0.62 -25.50 16 25 Si 0.90 21.57 29.59 -169.99 -5.03 16.54 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 C 0.16 3.15 5.56 -3.71 -0.02 3.13 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.78 6.40 -51.93 -0.33 0.45 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.41 5.29 7.74 -40.82 -0.32 4.97 16 34 H 0.19 0.92 7.58 -52.49 -0.40 0.52 16 35 H 0.20 1.43 8.06 -52.49 -0.42 1.00 16 36 H 0.05 0.69 6.36 -51.93 -0.33 0.35 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 2.28 6.04 -51.93 -0.31 1.97 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.05 1.06 7.45 -51.93 -0.39 0.67 16 LS Contribution 359.57 15.07 5.42 5.42 Total: -1.00 -33.63 359.57 -7.61 -41.24 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -6.19 Total: 3.40 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -1.68 Total: 5.94 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: -0.31 Total: -57.89 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: 0.17 Total: -14.65 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.63 -7.61 -41.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025518523.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.935 kcal (2) G-P(sol) polarization free energy of solvation -33.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds