Wall clock time and date at job start Tue Mar 31 2020 12:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.47033 * 2 1 4 4 N 1.46491 * 109.46896 * 120.00081 * 2 1 3 5 5 C 1.34777 * 120.00331 * 274.99638 * 4 2 1 6 6 O 1.21593 * 119.99900 * 0.02562 * 5 4 2 7 7 C 1.47584 * 120.00182 * 179.72661 * 5 4 2 8 8 C 1.38050 * 119.72453 * 180.27922 * 7 5 4 9 9 N 1.34880 * 119.94541 * 180.02562 * 8 7 5 10 10 H 0.96999 * 120.30651 * 180.02562 * 9 8 7 11 11 C 1.34950 * 119.38188 * 359.97438 * 9 8 7 12 12 O 1.21866 * 120.26578 * 180.02562 * 11 9 8 13 13 C 1.41787 * 119.46599 * 0.02562 * 11 9 8 14 14 N 1.30617 * 120.02715 * 359.72095 * 13 11 9 15 15 C 1.53004 * 109.46810 * 240.00164 * 2 1 3 16 16 H 1.08995 * 109.49761 * 299.93419 * 15 2 1 17 17 C 1.53040 * 109.49815 * 60.00143 * 15 2 1 18 18 C 1.53037 * 109.53435 * 181.31513 * 17 15 2 19 19 C 1.53189 * 109.31670 * 298.63250 * 18 17 15 20 20 N 1.46934 * 108.77214 * 54.63615 * 19 18 17 21 21 C 1.36933 * 120.62653 * 126.42098 * 20 19 18 22 22 H 1.08012 * 119.99396 * 207.67168 * 21 20 19 23 23 C 1.38807 * 120.00647 * 27.66290 * 21 20 19 24 24 N 1.31620 * 119.99883 * 17.37105 * 23 21 20 25 25 Si 1.86799 * 120.00190 * 197.37073 * 23 21 20 26 26 H 1.48499 * 109.47482 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47410 * 120.00080 * 25 23 21 28 28 H 1.48507 * 109.47117 * 240.00196 * 25 23 21 29 29 C 1.46925 * 118.73993 * 306.38996 * 20 19 18 30 30 H 1.08998 * 109.46775 * 299.99736 * 1 2 3 31 31 H 1.08999 * 109.46948 * 59.99770 * 1 2 3 32 32 H 1.09003 * 109.47033 * 180.02562 * 1 2 3 33 33 H 0.97005 * 120.00214 * 95.00025 * 4 2 1 34 34 H 1.08000 * 120.02484 * 359.97111 * 8 7 5 35 35 H 1.07996 * 119.98674 * 180.02562 * 13 11 9 36 36 H 1.08997 * 109.45769 * 301.33256 * 17 15 2 37 37 H 1.08997 * 109.45730 * 61.31003 * 17 15 2 38 38 H 1.08997 * 109.49779 * 58.58738 * 18 17 15 39 39 H 1.09004 * 109.49634 * 178.65005 * 18 17 15 40 40 H 1.08993 * 109.59108 * 174.42155 * 19 18 17 41 41 H 1.08999 * 109.58873 * 294.85629 * 19 18 17 42 42 H 0.97003 * 120.00232 * 179.97438 * 24 23 21 43 43 H 1.08991 * 109.58889 * 293.82832 * 29 20 19 44 44 H 1.09000 * 109.58630 * 173.39157 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8576 1.1614 2.4119 7 6 2.6333 -0.7155 3.5636 8 6 2.7575 -0.0228 4.7512 9 7 3.2019 -0.6554 5.8564 10 1 3.2908 -0.1739 6.6937 11 6 3.5206 -1.9649 5.7867 12 8 3.9232 -2.5526 6.7755 13 6 3.3832 -2.6515 4.5538 14 7 2.9461 -2.0184 3.4983 15 6 2.0400 -0.7212 -1.2493 16 1 1.6779 -1.7493 -1.2492 17 6 1.5302 -0.0002 -2.4993 18 6 2.0126 -0.7398 -3.7492 19 6 3.5442 -0.7369 -3.7803 20 7 4.0438 -1.2971 -2.5171 21 6 4.9328 -2.3386 -2.5192 22 1 4.9619 -3.0254 -1.6860 23 6 5.7964 -2.5120 -3.5920 24 7 6.0120 -1.5204 -4.4302 25 14 6.6525 -4.1527 -3.8462 26 1 6.2446 -5.0954 -2.7738 27 1 6.2704 -4.7109 -5.1682 28 1 8.1237 -3.9560 -3.7984 29 6 3.5720 -0.7181 -1.2519 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6318 1.1526 34 1 2.4999 1.0252 4.7950 35 1 3.6354 -3.6996 4.4886 36 1 0.4405 0.0205 -2.4874 37 1 1.9128 1.0203 -2.5111 38 1 1.6511 -1.7679 -3.7258 39 1 1.6293 -0.2396 -4.6386 40 1 3.8939 -1.3460 -4.6137 41 1 3.9054 0.2851 -3.8948 42 1 6.6158 -1.6414 -5.1797 43 1 3.9353 0.3054 -1.1605 44 1 3.9400 -1.3148 -0.4173 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025518523.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:41 Heat of formation + Delta-G solvation = -38.961408 kcal Electronic energy + Delta-G solvation = -27136.691689 eV Core-core repulsion = 23281.804742 eV Total energy + Delta-G solvation = -3854.886946 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.85714 -40.91623 -39.45980 -38.55210 -36.70777 -36.32364 -34.61889 -32.66891 -32.18920 -31.29391 -29.79856 -27.13236 -26.55061 -25.92047 -24.66776 -23.58388 -22.78893 -21.55460 -20.95520 -19.96393 -19.51289 -18.66946 -18.15815 -17.21721 -17.13902 -16.95958 -16.78788 -15.98970 -15.85773 -15.74185 -15.39197 -15.30045 -14.92774 -14.64729 -14.50661 -14.12992 -13.99828 -13.78252 -13.56223 -13.19733 -12.97248 -12.89902 -12.78447 -12.73690 -12.56458 -12.22102 -12.17682 -11.92791 -11.73216 -11.47752 -11.34974 -11.13008 -10.98707 -10.57053 -10.51844 -10.04893 -9.41845 -8.65175 -7.84981 -5.30139 -0.58070 0.05775 1.41811 1.46807 1.48958 1.59342 1.74317 2.20011 2.52603 2.61775 3.01807 3.10602 3.29401 3.58346 3.67276 3.87551 3.97717 4.06584 4.11318 4.22211 4.39977 4.49653 4.55462 4.69188 4.78522 4.82060 4.91857 4.94226 4.99937 5.09959 5.15506 5.16195 5.24999 5.29336 5.32266 5.39036 5.51478 5.57383 5.62800 5.70634 5.82045 6.31283 6.41205 6.49654 6.66864 7.17434 7.20159 7.89244 8.40646 9.21122 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012110 B = 0.003596 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.677659 B = 7785.154772 C = 9634.126714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.155 3.845 3 H 0.073 0.927 4 N -0.700 5.700 5 C 0.588 3.412 6 O -0.572 6.572 7 C -0.102 4.102 8 C 0.208 3.792 9 N -0.568 5.568 10 H 0.443 0.557 11 C 0.479 3.521 12 O -0.556 6.556 13 C 0.036 3.964 14 N -0.382 5.382 15 C -0.095 4.095 16 H 0.075 0.925 17 C -0.097 4.097 18 C -0.131 4.131 19 C 0.172 3.828 20 N -0.609 5.609 21 C -0.259 4.259 22 H 0.067 0.933 23 C -0.051 4.051 24 N -0.936 5.936 25 Si 0.964 3.036 26 H -0.265 1.265 27 H -0.290 1.290 28 H -0.295 1.295 29 C 0.156 3.844 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.413 0.587 34 H 0.221 0.779 35 H 0.208 0.792 36 H 0.089 0.911 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.069 0.931 40 H 0.051 0.949 41 H -0.009 1.009 42 H 0.248 0.752 43 H -0.001 1.001 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.638 3.471 17.184 21.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.050 3.950 3 H 0.091 0.909 4 N -0.349 5.349 5 C 0.375 3.625 6 O -0.453 6.453 7 C -0.226 4.226 8 C 0.070 3.930 9 N -0.201 5.201 10 H 0.286 0.714 11 C 0.275 3.725 12 O -0.434 6.434 13 C -0.154 4.154 14 N -0.098 5.098 15 C -0.116 4.116 16 H 0.093 0.907 17 C -0.134 4.134 18 C -0.170 4.170 19 C 0.047 3.953 20 N -0.332 5.332 21 C -0.389 4.389 22 H 0.085 0.915 23 C -0.246 4.246 24 N -0.583 5.583 25 Si 0.792 3.208 26 H -0.189 1.189 27 H -0.216 1.216 28 H -0.222 1.222 29 C 0.030 3.970 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.249 0.751 34 H 0.237 0.763 35 H 0.225 0.775 36 H 0.107 0.893 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.009 0.991 42 H 0.058 0.942 43 H 0.017 0.983 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.641 3.595 16.785 21.318 hybrid contribution 1.361 -0.490 0.500 1.531 sum -11.280 3.105 17.285 20.872 Atomic orbital electron populations 1.22131 0.93378 1.02784 1.02761 1.20955 0.95064 0.96262 0.82710 0.90899 1.45877 1.65223 1.14910 1.08891 1.17418 0.76938 0.85447 0.82704 1.90775 1.53268 1.15831 1.85401 1.20296 1.16066 0.91324 0.94911 1.23490 0.84759 1.00725 0.84037 1.43562 1.50957 1.11740 1.13807 0.71405 1.18834 0.79672 0.82005 0.91942 1.91001 1.47564 1.66073 1.38738 1.24971 1.01872 1.02786 0.85726 1.67652 1.02817 1.07806 1.31491 1.21750 0.95942 0.99932 0.93940 0.90672 1.21440 1.00936 0.98184 0.92881 1.22007 0.96568 1.00168 0.98215 1.20646 0.91029 0.94718 0.88940 1.44330 1.49744 1.38035 1.01118 1.19556 1.11135 1.02806 1.05400 0.91504 1.25760 0.98472 1.00444 0.99961 1.70208 1.39113 1.31165 1.17794 0.85257 0.77458 0.80342 0.77720 1.18890 1.21646 1.22216 1.20952 0.92953 0.94813 0.88241 0.92725 0.89946 0.91655 0.75086 0.76261 0.77509 0.89303 0.92896 0.92776 0.91198 0.93069 0.99138 0.94237 0.98321 0.93222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.13 71.98 0.66 -2.51 16 2 C 0.15 4.03 2.16 45.00 0.10 4.12 16 3 H 0.07 2.15 7.58 -2.39 -0.02 2.13 16 4 N -0.70 -17.63 4.47 -445.64 -1.99 -19.62 16 5 C 0.59 14.52 7.75 86.71 0.67 15.19 16 6 O -0.57 -16.14 15.94 -4.01 -0.06 -16.20 16 7 C -0.10 -2.00 6.71 41.21 0.28 -1.72 16 8 C 0.21 2.44 10.77 84.18 0.91 3.35 16 9 N -0.57 -5.97 5.28 -316.87 -1.67 -7.65 16 10 H 0.44 1.84 8.92 -92.71 -0.83 1.01 16 11 C 0.48 8.53 7.74 85.09 0.66 9.18 16 12 O -0.56 -13.61 17.95 -4.88 -0.09 -13.70 16 13 C 0.04 0.65 11.23 85.75 0.96 1.61 16 14 N -0.38 -7.83 9.62 -183.46 -1.77 -9.59 16 15 C -0.10 -2.92 1.97 -10.71 -0.02 -2.95 16 16 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 17 C -0.10 -2.85 4.85 30.62 0.15 -2.70 16 18 C -0.13 -4.67 6.08 30.67 0.19 -4.48 16 19 C 0.17 8.31 5.31 86.36 0.46 8.77 16 20 N -0.61 -30.51 2.99 -699.10 -2.09 -32.60 16 21 C -0.26 -14.24 9.58 84.03 0.81 -13.43 16 22 H 0.07 3.58 7.89 -2.90 -0.02 3.56 16 23 C -0.05 -2.88 4.91 84.86 0.42 -2.46 16 24 N -0.94 -55.97 11.19 21.65 0.24 -55.73 16 25 Si 0.96 45.03 29.59 68.60 2.03 47.06 16 26 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 27 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 28 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 29 C 0.16 6.39 5.56 86.36 0.48 6.87 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.51 6.40 -2.39 -0.02 1.50 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.41 10.25 7.74 -92.70 -0.72 9.53 16 34 H 0.22 1.32 7.58 -2.91 -0.02 1.30 16 35 H 0.21 2.91 8.06 -2.91 -0.02 2.88 16 36 H 0.09 2.03 6.36 -2.39 -0.02 2.01 16 37 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 39 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 40 H 0.05 2.81 6.04 -2.39 -0.01 2.80 16 41 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 42 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 43 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 44 H 0.05 2.02 7.45 -2.39 -0.02 2.00 16 Total: -1.00 -74.75 359.57 0.80 -73.95 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -0.50 Total: 15.25 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: 6.71 Total: 18.83 kcal Atomic # 7 Polarization: -117.91 SS G_CDS: -7.28 Total: -125.19 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.15 Total: -29.90 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -74.75 0.80 -73.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025518523.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.986 kcal (2) G-P(sol) polarization free energy of solvation -74.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds