Wall clock time and date at job start Tue Mar 31 2020 12:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46975 * 2 1 4 4 N 1.46504 * 109.46874 * 240.00267 * 2 1 3 5 5 C 1.34774 * 119.99909 * 84.99943 * 4 2 1 6 6 O 1.21593 * 120.00219 * 359.97438 * 5 4 2 7 7 C 1.47576 * 119.99759 * 179.97438 * 5 4 2 8 8 C 1.38049 * 119.72785 * 179.72646 * 7 5 4 9 9 N 1.34878 * 119.94841 * 179.74263 * 8 7 5 10 10 H 0.96995 * 120.30756 * 180.26823 * 9 8 7 11 11 C 1.34956 * 119.38496 * 0.52679 * 9 8 7 12 12 O 1.21851 * 120.27286 * 179.70429 * 11 9 8 13 13 C 1.41791 * 119.45645 * 359.71906 * 11 9 8 14 14 N 1.30606 * 120.03650 * 0.02694 * 13 11 9 15 15 C 1.52993 * 109.47292 * 120.00069 * 2 1 3 16 16 H 1.09002 * 109.52579 * 59.91950 * 15 2 1 17 17 C 1.53044 * 109.49924 * 299.83829 * 15 2 1 18 18 C 1.53066 * 109.66144 * 178.74759 * 17 15 2 19 19 C 1.53202 * 109.29419 * 61.15451 * 18 17 15 20 20 N 1.46921 * 108.89095 * 305.57926 * 19 18 17 21 21 C 1.36936 * 120.62896 * 233.55861 * 20 19 18 22 22 H 1.08007 * 119.99922 * 151.82366 * 21 20 19 23 23 C 1.38810 * 119.99947 * 331.81879 * 21 20 19 24 24 N 1.31613 * 120.00273 * 343.08601 * 23 21 20 25 25 Si 1.86803 * 119.99828 * 163.07892 * 23 21 20 26 26 H 1.48507 * 109.47194 * 60.00090 * 25 23 21 27 27 H 1.48502 * 109.47096 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47239 * 300.00059 * 25 23 21 29 29 C 1.46925 * 118.73959 * 53.53708 * 20 19 18 30 30 H 1.08997 * 109.47418 * 60.00065 * 1 2 3 31 31 H 1.09003 * 109.46975 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47341 * 299.99480 * 1 2 3 33 33 H 0.96999 * 119.99460 * 264.99402 * 4 2 1 34 34 H 1.07996 * 120.02288 * 359.97438 * 8 7 5 35 35 H 1.08003 * 119.97823 * 179.97438 * 13 11 9 36 36 H 1.09002 * 109.46193 * 298.70732 * 17 15 2 37 37 H 1.09008 * 109.45699 * 58.67496 * 17 15 2 38 38 H 1.09002 * 109.39095 * 301.28091 * 18 17 15 39 39 H 1.08998 * 109.62674 * 181.17131 * 18 17 15 40 40 H 1.08997 * 109.58441 * 185.72130 * 19 18 17 41 41 H 1.09001 * 109.58226 * 65.43722 * 19 18 17 42 42 H 0.96997 * 120.00271 * 180.02562 * 24 23 21 43 43 H 1.08996 * 109.59125 * 66.18147 * 29 20 19 44 44 H 1.09006 * 109.58704 * 186.46412 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1470 -0.0182 -2.3572 6 8 1.8574 1.1615 -2.4118 7 6 2.6394 -0.7137 -3.5620 8 6 2.7636 -0.0210 -4.7496 9 7 3.2181 -0.6509 -5.8522 10 1 3.3112 -0.1683 -6.6884 11 6 3.5373 -1.9604 -5.7826 12 8 3.9443 -2.5468 -6.7701 13 6 3.3948 -2.6482 -4.5509 14 7 2.9574 -2.0153 -3.4955 15 6 2.0400 -0.7212 1.2492 16 1 1.6760 -1.7487 1.2508 17 6 1.5336 0.0021 2.4992 18 6 2.0159 -0.7345 3.7513 19 6 3.5477 -0.7379 3.7781 20 7 4.0443 -1.3003 2.5149 21 6 4.9301 -2.3445 2.5167 22 1 4.9508 -3.0366 1.6877 23 6 5.8017 -2.5135 3.5838 24 7 6.0200 -1.5200 4.4189 25 14 6.6646 -4.1512 3.8346 26 1 7.4932 -4.4620 2.6420 27 1 7.5344 -4.0736 5.0357 28 1 5.6517 -5.2203 4.0259 29 6 3.5720 -0.7215 1.2498 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5137 0.8900 33 1 2.2490 -1.6317 -1.1526 34 1 2.5007 1.0255 -4.7948 35 1 3.6473 -3.6963 -4.4857 36 1 1.9182 1.0219 2.5096 37 1 0.4438 0.0250 2.4889 38 1 1.6501 -1.7611 3.7307 39 1 1.6376 -0.2309 4.6409 40 1 3.8971 -1.3470 4.6117 41 1 3.9133 0.2825 3.8926 42 1 6.6292 -1.6380 5.1644 43 1 3.9376 0.3011 1.1568 44 1 3.9396 -1.3183 0.4151 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025518525.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:49 Heat of formation + Delta-G solvation = -14.402924 kcal Electronic energy + Delta-G solvation = -27136.888498 eV Core-core repulsion = 23283.066488 eV Total energy + Delta-G solvation = -3853.822011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.11150 -39.85785 -38.16600 -37.54897 -35.68669 -35.19858 -32.99252 -31.38143 -30.53215 -30.23890 -28.45402 -25.85098 -25.33496 -24.91332 -23.43596 -21.97904 -21.58656 -20.36095 -19.64937 -18.83584 -18.75719 -17.38913 -16.72376 -16.41259 -16.22765 -15.91153 -15.11678 -14.97978 -14.74732 -14.48459 -14.25924 -13.75014 -13.56340 -13.38660 -13.15260 -12.96180 -12.54432 -12.43964 -12.22986 -12.18994 -11.89996 -11.78777 -11.52208 -11.09181 -10.93533 -10.64433 -10.42207 -10.31041 -10.16946 -10.12247 -9.87763 -9.80108 -9.53159 -9.40750 -8.97946 -8.63334 -8.43380 -6.63588 -5.76263 -3.18965 0.07836 0.87539 2.07436 2.62826 3.12279 3.40025 3.44013 3.45727 3.46877 3.76629 3.83316 4.33767 4.50363 4.60183 4.87077 4.99841 5.27321 5.39483 5.43734 5.49527 5.58121 5.62221 5.72468 5.78623 5.82066 5.92141 6.03584 6.09346 6.13398 6.31858 6.37169 6.44857 6.56815 6.64546 6.72910 6.83794 6.89709 7.00783 7.06944 7.24992 7.42533 7.62964 7.70179 7.81731 8.20381 8.47783 9.24102 9.87630 10.44548 11.32097 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012072 B = 0.003604 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.941709 B = 7767.130200 C = 9624.483768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 H 0.088 0.912 4 N -0.696 5.696 5 C 0.589 3.411 6 O -0.550 6.550 7 C -0.073 4.073 8 C 0.172 3.828 9 N -0.587 5.587 10 H 0.425 0.575 11 C 0.478 3.522 12 O -0.523 6.523 13 C 0.045 3.955 14 N -0.369 5.369 15 C -0.111 4.111 16 H 0.073 0.927 17 C -0.100 4.100 18 C -0.142 4.142 19 C 0.169 3.831 20 N -0.591 5.591 21 C -0.253 4.253 22 H 0.065 0.935 23 C 0.003 3.997 24 N -0.903 5.903 25 Si 0.901 3.099 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.284 1.284 29 C 0.155 3.845 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.412 0.588 34 H 0.191 0.809 35 H 0.195 0.805 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.049 0.951 40 H 0.085 0.915 41 H 0.016 0.984 42 H 0.254 0.746 43 H 0.015 0.985 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.840 3.501 -15.680 19.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.042 3.958 3 H 0.106 0.894 4 N -0.346 5.346 5 C 0.374 3.626 6 O -0.429 6.429 7 C -0.197 4.197 8 C 0.036 3.964 9 N -0.220 5.220 10 H 0.265 0.735 11 C 0.273 3.727 12 O -0.398 6.398 13 C -0.146 4.146 14 N -0.084 5.084 15 C -0.132 4.132 16 H 0.091 0.909 17 C -0.139 4.139 18 C -0.181 4.181 19 C 0.043 3.957 20 N -0.313 5.313 21 C -0.382 4.382 22 H 0.082 0.918 23 C -0.195 4.195 24 N -0.547 5.547 25 Si 0.731 3.269 26 H -0.209 1.209 27 H -0.217 1.217 28 H -0.210 1.210 29 C 0.029 3.971 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.248 0.752 34 H 0.208 0.792 35 H 0.212 0.788 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.104 0.896 41 H 0.034 0.966 42 H 0.064 0.936 43 H 0.033 0.967 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.799 3.629 -15.227 19.018 hybrid contribution 0.780 -0.595 -0.913 1.340 sum -10.019 3.034 -16.140 19.238 Atomic orbital electron populations 1.22203 0.95554 1.02002 1.02176 1.21124 0.93563 0.97551 0.83514 0.89425 1.45873 1.64991 1.14889 1.08806 1.17156 0.77557 0.85663 0.82266 1.90794 1.52217 1.14965 1.84904 1.20516 1.13514 0.91020 0.94615 1.23218 0.87801 1.00075 0.85274 1.43686 1.52413 1.12562 1.13322 0.73516 1.18821 0.80216 0.81268 0.92395 1.91007 1.45820 1.65167 1.37790 1.24788 1.01678 1.02085 0.86056 1.67724 1.02428 1.07436 1.30819 1.21969 0.99612 0.99287 0.92313 0.90900 1.21444 0.98723 0.99023 0.94669 1.22181 1.00880 0.99373 0.95695 1.20784 0.87462 0.97198 0.90239 1.44021 1.49935 1.37870 0.99470 1.19137 1.11086 1.01956 1.06047 0.91757 1.25029 0.97216 0.97403 0.99893 1.70024 1.37767 1.29367 1.17564 0.86392 0.79180 0.84014 0.77309 1.20899 1.21685 1.21021 1.20863 0.89822 0.96346 0.90116 0.92655 0.92581 0.91196 0.75204 0.79240 0.78789 0.92613 0.93121 0.92786 0.93234 0.89647 0.96553 0.93630 0.96663 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.14 37.16 0.34 -1.58 16 2 C 0.15 2.03 2.16 -67.93 -0.15 1.88 16 3 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 4 N -0.70 -9.17 4.47 -54.83 -0.24 -9.41 16 5 C 0.59 7.65 7.75 -12.45 -0.10 7.55 16 6 O -0.55 -8.18 15.94 5.28 0.08 -8.10 16 7 C -0.07 -0.77 6.71 -83.11 -0.56 -1.33 16 8 C 0.17 1.25 10.77 -16.28 -0.18 1.07 16 9 N -0.59 -3.82 5.28 -14.20 -0.08 -3.90 16 10 H 0.42 1.51 8.92 -40.82 -0.36 1.14 16 11 C 0.48 4.61 7.74 -14.82 -0.11 4.49 16 12 O -0.52 -6.66 17.95 5.05 0.09 -6.57 16 13 C 0.04 0.42 11.23 -16.72 -0.19 0.23 16 14 N -0.37 -3.98 9.62 -9.34 -0.09 -4.07 16 15 C -0.11 -1.79 1.98 -90.50 -0.18 -1.97 16 16 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 17 C -0.10 -1.60 4.85 -26.67 -0.13 -1.73 16 18 C -0.14 -2.63 6.09 -26.59 -0.16 -2.79 16 19 C 0.17 3.98 5.30 -3.71 -0.02 3.96 16 20 N -0.59 -14.54 2.99 -172.32 -0.52 -15.06 16 21 C -0.25 -6.85 9.58 -15.06 -0.14 -7.00 16 22 H 0.06 1.71 7.89 -52.48 -0.41 1.29 16 23 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 24 N -0.90 -26.14 11.20 55.49 0.62 -25.52 16 25 Si 0.90 21.58 29.59 -169.99 -5.03 16.56 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 29 C 0.16 3.16 5.55 -3.71 -0.02 3.14 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.78 6.40 -51.93 -0.33 0.45 16 33 H 0.41 5.29 7.73 -40.82 -0.32 4.98 16 34 H 0.19 0.92 7.58 -52.49 -0.40 0.52 16 35 H 0.20 1.43 8.06 -52.48 -0.42 1.01 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.05 0.69 6.37 -51.92 -0.33 0.35 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.09 2.26 6.06 -51.93 -0.31 1.95 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.05 1.06 7.44 -51.93 -0.39 0.68 16 LS Contribution 359.60 15.07 5.42 5.42 Total: -1.00 -33.61 359.60 -7.61 -41.22 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.19 Total: 3.48 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: -1.68 Total: 5.95 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: -0.30 Total: -57.95 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: 0.17 Total: -14.66 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.61 -7.61 -41.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025518525.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.813 kcal (2) G-P(sol) polarization free energy of solvation -33.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds