Wall clock time and date at job start Tue Mar 31 2020 12:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46975 * 2 1 4 4 N 1.46504 * 109.46874 * 240.00267 * 2 1 3 5 5 C 1.34774 * 119.99909 * 84.99943 * 4 2 1 6 6 O 1.21593 * 120.00219 * 359.97438 * 5 4 2 7 7 C 1.47576 * 119.99759 * 179.97438 * 5 4 2 8 8 C 1.38049 * 119.72785 * 179.72646 * 7 5 4 9 9 N 1.34878 * 119.94841 * 179.74263 * 8 7 5 10 10 H 0.96995 * 120.30756 * 180.26823 * 9 8 7 11 11 C 1.34956 * 119.38496 * 0.52679 * 9 8 7 12 12 O 1.21851 * 120.27286 * 179.70429 * 11 9 8 13 13 C 1.41791 * 119.45645 * 359.71906 * 11 9 8 14 14 N 1.30606 * 120.03650 * 0.02694 * 13 11 9 15 15 C 1.52993 * 109.47292 * 120.00069 * 2 1 3 16 16 H 1.09002 * 109.52579 * 59.91950 * 15 2 1 17 17 C 1.53044 * 109.49924 * 299.83829 * 15 2 1 18 18 C 1.53066 * 109.66144 * 178.74759 * 17 15 2 19 19 C 1.53202 * 109.29419 * 61.15451 * 18 17 15 20 20 N 1.46921 * 108.89095 * 305.57926 * 19 18 17 21 21 C 1.36936 * 120.62896 * 233.55861 * 20 19 18 22 22 H 1.08007 * 119.99922 * 151.82366 * 21 20 19 23 23 C 1.38810 * 119.99947 * 331.81879 * 21 20 19 24 24 N 1.31613 * 120.00273 * 343.08601 * 23 21 20 25 25 Si 1.86803 * 119.99828 * 163.07892 * 23 21 20 26 26 H 1.48507 * 109.47194 * 60.00090 * 25 23 21 27 27 H 1.48502 * 109.47096 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47239 * 300.00059 * 25 23 21 29 29 C 1.46925 * 118.73959 * 53.53708 * 20 19 18 30 30 H 1.08997 * 109.47418 * 60.00065 * 1 2 3 31 31 H 1.09003 * 109.46975 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47341 * 299.99480 * 1 2 3 33 33 H 0.96999 * 119.99460 * 264.99402 * 4 2 1 34 34 H 1.07996 * 120.02288 * 359.97438 * 8 7 5 35 35 H 1.08003 * 119.97823 * 179.97438 * 13 11 9 36 36 H 1.09002 * 109.46193 * 298.70732 * 17 15 2 37 37 H 1.09008 * 109.45699 * 58.67496 * 17 15 2 38 38 H 1.09002 * 109.39095 * 301.28091 * 18 17 15 39 39 H 1.08998 * 109.62674 * 181.17131 * 18 17 15 40 40 H 1.08997 * 109.58441 * 185.72130 * 19 18 17 41 41 H 1.09001 * 109.58226 * 65.43722 * 19 18 17 42 42 H 0.96997 * 120.00271 * 180.02562 * 24 23 21 43 43 H 1.08996 * 109.59125 * 66.18147 * 29 20 19 44 44 H 1.09006 * 109.58704 * 186.46412 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1470 -0.0182 -2.3572 6 8 1.8574 1.1615 -2.4118 7 6 2.6394 -0.7137 -3.5620 8 6 2.7636 -0.0210 -4.7496 9 7 3.2181 -0.6509 -5.8522 10 1 3.3112 -0.1683 -6.6884 11 6 3.5373 -1.9604 -5.7826 12 8 3.9443 -2.5468 -6.7701 13 6 3.3948 -2.6482 -4.5509 14 7 2.9574 -2.0153 -3.4955 15 6 2.0400 -0.7212 1.2492 16 1 1.6760 -1.7487 1.2508 17 6 1.5336 0.0021 2.4992 18 6 2.0159 -0.7345 3.7513 19 6 3.5477 -0.7379 3.7781 20 7 4.0443 -1.3003 2.5149 21 6 4.9301 -2.3445 2.5167 22 1 4.9508 -3.0366 1.6877 23 6 5.8017 -2.5135 3.5838 24 7 6.0200 -1.5200 4.4189 25 14 6.6646 -4.1512 3.8346 26 1 7.4932 -4.4620 2.6420 27 1 7.5344 -4.0736 5.0357 28 1 5.6517 -5.2203 4.0259 29 6 3.5720 -0.7215 1.2498 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5137 0.8900 33 1 2.2490 -1.6317 -1.1526 34 1 2.5007 1.0255 -4.7948 35 1 3.6473 -3.6963 -4.4857 36 1 1.9182 1.0219 2.5096 37 1 0.4438 0.0250 2.4889 38 1 1.6501 -1.7611 3.7307 39 1 1.6376 -0.2309 4.6409 40 1 3.8971 -1.3470 4.6117 41 1 3.9133 0.2825 3.8926 42 1 6.6292 -1.6380 5.1644 43 1 3.9376 0.3011 1.1568 44 1 3.9396 -1.3183 0.4151 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025518525.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:48 Heat of formation + Delta-G solvation = -39.047104 kcal Electronic energy + Delta-G solvation = -27137.957150 eV Core-core repulsion = 23283.066488 eV Total energy + Delta-G solvation = -3854.890662 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.85752 -40.91600 -39.45591 -38.55365 -36.70576 -36.32366 -34.61724 -32.67024 -32.18803 -31.29471 -29.80007 -27.12758 -26.55020 -25.92024 -24.66749 -23.58570 -22.78888 -21.55537 -20.95292 -19.96421 -19.51346 -18.66536 -18.15889 -17.21296 -17.14355 -16.95949 -16.78395 -15.98987 -15.85788 -15.74244 -15.39573 -15.30198 -14.92392 -14.64922 -14.50766 -14.12314 -13.99661 -13.78154 -13.56368 -13.18944 -12.98402 -12.89937 -12.73847 -12.72597 -12.55647 -12.27995 -12.17215 -11.95486 -11.72825 -11.47694 -11.35091 -11.12949 -10.99160 -10.57072 -10.50316 -10.04998 -9.41890 -8.64247 -7.84705 -5.30546 -0.58031 0.05772 1.41798 1.48114 1.50252 1.56915 1.74256 2.19998 2.52863 2.61803 3.01752 3.10606 3.29640 3.58467 3.67277 3.87552 3.97723 4.06529 4.11313 4.22170 4.39800 4.49503 4.55407 4.69121 4.78493 4.82016 4.91955 4.94251 4.99803 5.09911 5.15504 5.16196 5.24976 5.29407 5.32192 5.39014 5.51436 5.57152 5.62552 5.70392 5.82131 6.31278 6.41446 6.49632 6.66868 7.17740 7.20115 7.89440 8.41106 9.21163 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012072 B = 0.003604 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.941709 B = 7767.130200 C = 9624.483768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.155 3.845 3 H 0.073 0.927 4 N -0.700 5.700 5 C 0.589 3.411 6 O -0.572 6.572 7 C -0.103 4.103 8 C 0.208 3.792 9 N -0.568 5.568 10 H 0.443 0.557 11 C 0.479 3.521 12 O -0.556 6.556 13 C 0.036 3.964 14 N -0.382 5.382 15 C -0.095 4.095 16 H 0.075 0.925 17 C -0.097 4.097 18 C -0.131 4.131 19 C 0.173 3.827 20 N -0.609 5.609 21 C -0.262 4.262 22 H 0.067 0.933 23 C -0.050 4.050 24 N -0.936 5.936 25 Si 0.965 3.035 26 H -0.277 1.277 27 H -0.295 1.295 28 H -0.276 1.276 29 C 0.156 3.844 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.413 0.587 34 H 0.221 0.779 35 H 0.208 0.792 36 H 0.052 0.948 37 H 0.089 0.911 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.050 0.950 41 H -0.010 1.010 42 H 0.249 0.751 43 H -0.002 1.002 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.573 3.488 -17.103 21.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.050 3.950 3 H 0.091 0.909 4 N -0.349 5.349 5 C 0.375 3.625 6 O -0.453 6.453 7 C -0.226 4.226 8 C 0.070 3.930 9 N -0.201 5.201 10 H 0.286 0.714 11 C 0.276 3.724 12 O -0.434 6.434 13 C -0.154 4.154 14 N -0.098 5.098 15 C -0.116 4.116 16 H 0.093 0.907 17 C -0.134 4.134 18 C -0.170 4.170 19 C 0.047 3.953 20 N -0.332 5.332 21 C -0.392 4.392 22 H 0.084 0.916 23 C -0.245 4.245 24 N -0.582 5.582 25 Si 0.793 3.207 26 H -0.202 1.202 27 H -0.222 1.222 28 H -0.202 1.202 29 C 0.031 3.969 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.249 0.751 34 H 0.237 0.763 35 H 0.225 0.775 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.069 0.931 41 H 0.008 0.992 42 H 0.058 0.942 43 H 0.016 0.984 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.557 3.623 -16.690 21.198 hybrid contribution 1.349 -0.507 -0.529 1.535 sum -11.208 3.116 -17.219 20.780 Atomic orbital electron populations 1.22128 0.93369 1.02788 1.02769 1.20952 0.95070 0.96257 0.82702 0.90900 1.45878 1.65229 1.14920 1.08875 1.17414 0.76952 0.85439 0.82696 1.90775 1.53332 1.15806 1.85362 1.20298 1.15980 0.91409 0.94925 1.23487 0.84763 1.00702 0.84052 1.43562 1.50749 1.11785 1.13982 0.71407 1.18833 0.79706 0.82002 0.91905 1.90997 1.47466 1.66125 1.38767 1.24973 1.01891 1.02769 0.85726 1.67653 1.02831 1.07823 1.31465 1.21743 0.95946 0.99919 0.93945 0.90684 1.21442 1.00943 0.98185 0.92865 1.22015 0.96578 1.00171 0.98203 1.20633 0.91034 0.94707 0.88926 1.44295 1.50008 1.37802 1.01084 1.19486 1.11121 1.02632 1.05977 0.91557 1.25777 0.98375 1.00421 0.99950 1.70188 1.38747 1.31217 1.18091 0.85381 0.78106 0.80261 0.76947 1.20231 1.22169 1.20203 1.20947 0.92926 0.94812 0.88248 0.92706 0.91655 0.89952 0.75089 0.76260 0.77508 0.92911 0.89305 0.92818 0.91145 0.93134 0.99156 0.94205 0.98368 0.93244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.14 71.98 0.66 -2.52 16 2 C 0.15 4.04 2.16 44.99 0.10 4.13 16 3 H 0.07 2.15 7.58 -2.39 -0.02 2.13 16 4 N -0.70 -17.68 4.47 -445.65 -1.99 -19.67 16 5 C 0.59 14.55 7.75 86.71 0.67 15.22 16 6 O -0.57 -16.16 15.94 -4.01 -0.06 -16.23 16 7 C -0.10 -2.01 6.71 41.21 0.28 -1.73 16 8 C 0.21 2.45 10.77 84.18 0.91 3.36 16 9 N -0.57 -6.00 5.28 -316.88 -1.67 -7.67 16 10 H 0.44 1.86 8.92 -92.71 -0.83 1.03 16 11 C 0.48 8.55 7.74 85.09 0.66 9.21 16 12 O -0.56 -13.63 17.95 -4.83 -0.09 -13.71 16 13 C 0.04 0.65 11.23 85.75 0.96 1.61 16 14 N -0.38 -7.85 9.62 -183.46 -1.77 -9.62 16 15 C -0.09 -2.93 1.98 -10.72 -0.02 -2.95 16 16 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 17 C -0.10 -2.86 4.85 30.63 0.15 -2.71 16 18 C -0.13 -4.68 6.09 30.68 0.19 -4.50 16 19 C 0.17 8.34 5.30 86.37 0.46 8.80 16 20 N -0.61 -30.55 2.99 -699.09 -2.09 -32.65 16 21 C -0.26 -14.44 9.58 84.03 0.81 -13.63 16 22 H 0.07 3.55 7.89 -2.91 -0.02 3.52 16 23 C -0.05 -2.81 4.92 84.86 0.42 -2.39 16 24 N -0.94 -56.00 11.20 21.65 0.24 -55.76 16 25 Si 0.96 45.02 29.59 68.60 2.03 47.05 16 26 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 27 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 28 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 29 C 0.16 6.42 5.55 86.36 0.48 6.89 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.08 1.51 6.40 -2.39 -0.02 1.50 16 33 H 0.41 10.28 7.73 -92.71 -0.72 9.56 16 34 H 0.22 1.33 7.58 -2.91 -0.02 1.31 16 35 H 0.21 2.91 8.06 -2.91 -0.02 2.89 16 36 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.09 2.03 6.37 -2.38 -0.02 2.02 16 38 H 0.05 1.93 8.14 -2.39 -0.02 1.92 16 39 H 0.07 2.22 8.14 -2.39 -0.02 2.21 16 40 H 0.05 2.78 6.06 -2.39 -0.01 2.76 16 41 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 42 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 43 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 44 H 0.05 2.02 7.44 -2.38 -0.02 2.00 16 Total: -1.00 -74.73 359.60 0.80 -73.93 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -0.50 Total: 15.53 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: 6.71 Total: 18.80 kcal Atomic # 7 Polarization: -118.08 SS G_CDS: -7.28 Total: -125.36 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.15 Total: -29.94 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -74.73 0.80 -73.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025518525.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.880 kcal (2) G-P(sol) polarization free energy of solvation -74.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds