Wall clock time and date at job start Tue Mar 31 2020 13:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42893 * 109.47504 * 2 1 4 4 C 1.35482 * 117.00336 * 180.02562 * 3 2 1 5 5 C 1.39625 * 119.97971 * 180.02562 * 4 3 2 6 6 N 1.31533 * 120.03993 * 179.76294 * 5 4 3 7 7 C 1.33205 * 119.98812 * 0.46744 * 6 5 4 8 8 C 1.47910 * 120.02441 * 179.78615 * 7 6 5 9 9 O 1.21552 * 119.99970 * 179.72316 * 8 7 6 10 10 N 1.34773 * 119.99732 * 0.02562 * 8 7 6 11 11 C 1.46507 * 119.99648 * 179.72281 * 10 8 7 12 12 C 1.53005 * 109.46695 * 185.94389 * 11 10 8 13 13 H 1.08994 * 109.87433 * 300.87773 * 12 11 10 14 14 C 1.54323 * 109.87799 * 179.85991 * 12 11 10 15 15 C 1.55153 * 102.94349 * 218.38712 * 14 12 11 16 16 C 1.54909 * 101.58120 * 35.50719 * 15 14 12 17 17 N 1.47020 * 109.88186 * 62.05473 * 12 11 10 18 18 C 1.36938 * 125.65019 * 298.33023 * 17 12 11 19 19 H 1.07995 * 120.00209 * 335.97616 * 18 17 12 20 20 C 1.38818 * 119.99872 * 155.97247 * 18 17 12 21 21 N 1.31611 * 119.99591 * 159.47250 * 20 18 17 22 22 Si 1.86800 * 119.99857 * 339.47261 * 20 18 17 23 23 H 1.48494 * 109.47421 * 84.66833 * 22 20 18 24 24 H 1.48499 * 109.46725 * 204.66805 * 22 20 18 25 25 H 1.48501 * 109.47040 * 324.66352 * 22 20 18 26 26 C 1.39387 * 119.95387 * 359.51214 * 7 6 5 27 27 N 1.32080 * 119.95952 * 0.25447 * 26 7 6 28 28 H 1.08998 * 109.47088 * 59.99668 * 1 2 3 29 29 H 1.08999 * 109.47509 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46916 * 300.00376 * 1 2 3 31 31 H 1.09002 * 109.46916 * 239.99624 * 2 1 3 32 32 H 1.08998 * 109.47088 * 120.00331 * 2 1 3 33 33 H 1.07999 * 119.98360 * 0.02562 * 5 4 3 34 34 H 0.96998 * 120.00253 * 359.72482 * 10 8 7 35 35 H 1.09000 * 109.47194 * 305.94144 * 11 10 8 36 36 H 1.08994 * 109.47063 * 65.94272 * 11 10 8 37 37 H 1.09001 * 110.72497 * 336.75656 * 14 12 11 38 38 H 1.09005 * 110.71649 * 100.02378 * 14 12 11 39 39 H 1.09002 * 111.00345 * 153.57902 * 15 14 12 40 40 H 1.08998 * 111.00570 * 277.43376 * 15 14 12 41 41 H 1.08989 * 110.36944 * 81.82531 * 16 15 14 42 42 H 1.08997 * 110.36785 * 204.04483 * 16 15 14 43 43 H 0.97006 * 119.99695 * 179.97438 * 21 20 18 44 44 H 1.08000 * 120.02535 * 180.22746 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3496 1.5247 -0.0005 5 6 3.8828 2.8151 0.0000 6 7 5.1866 2.9888 0.0042 7 6 5.9990 1.9331 -0.0015 8 6 7.4652 2.1276 -0.0016 9 8 8.2061 1.1639 -0.0016 10 7 7.9798 3.3732 0.0046 11 6 9.4321 3.5657 0.0107 12 6 9.7485 5.0546 0.1663 13 1 9.3017 5.6161 -0.6541 14 6 11.2768 5.2679 0.1774 15 6 11.4643 6.3840 1.2387 16 6 10.3616 6.0249 2.2658 17 7 9.2301 5.5441 1.4520 18 6 7.9142 5.5528 1.8308 19 1 7.1365 5.5581 1.0814 20 6 7.5797 5.5546 3.1781 21 7 6.3878 5.9621 3.5596 22 14 8.8213 4.9788 4.4494 23 1 9.7195 6.1050 4.8098 24 1 8.1056 4.5087 5.6627 25 1 9.6257 3.8646 3.8865 26 6 5.4663 0.6451 -0.0016 27 7 4.1568 0.4729 -0.0011 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.2244 3.6712 0.0012 34 1 7.3886 4.1422 0.0051 35 1 9.8685 3.0127 0.8424 36 1 9.8508 3.2014 -0.9274 37 1 11.7914 4.3563 0.4813 38 1 11.6267 5.6020 -0.7994 39 1 12.4537 6.3293 1.6927 40 1 11.2888 7.3687 0.8055 41 1 10.7086 5.2379 2.9353 42 1 10.0727 6.9074 2.8364 43 1 6.1540 5.9631 4.5011 44 1 6.1238 -0.2117 -0.0024 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028350253.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:23 Heat of formation + Delta-G solvation = 4.142073 kcal Electronic energy + Delta-G solvation = -27194.857185 eV Core-core repulsion = 23341.839346 eV Total energy + Delta-G solvation = -3853.017839 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.33003 -39.33933 -38.44419 -37.71888 -34.41191 -33.73804 -32.63647 -32.35353 -30.58635 -29.98093 -29.21971 -25.59251 -25.14806 -24.38644 -23.41709 -22.82769 -21.19645 -20.16706 -19.64424 -18.69987 -18.01240 -17.54978 -16.67044 -16.61977 -15.70960 -15.40629 -15.08902 -14.96551 -14.83213 -14.64450 -14.12023 -13.91303 -13.39252 -13.12942 -13.05557 -12.89298 -12.84277 -12.54352 -12.49432 -11.98851 -11.69014 -11.48109 -11.33734 -11.24664 -11.16680 -10.94149 -10.91986 -10.73421 -10.51491 -10.05506 -9.97964 -9.91636 -9.46324 -9.11788 -8.79298 -8.68920 -8.32720 -7.05060 -5.97643 -3.31738 0.58371 1.08495 2.68073 3.03344 3.33818 3.48060 3.51871 3.57294 3.97723 3.97957 4.25555 4.48335 4.53682 4.75043 4.78529 4.90313 5.09632 5.11767 5.19628 5.25381 5.25777 5.38347 5.44172 5.56423 5.56935 5.57861 5.75347 5.81939 5.91415 6.02919 6.08366 6.11053 6.24718 6.29487 6.38015 6.65092 6.77281 6.82868 6.90775 7.02062 7.13976 7.63740 7.71301 8.14900 8.28727 8.67446 8.80452 9.65667 10.16084 11.17429 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016644 B = 0.003626 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.887495 B = 7720.074645 C = 8667.073558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.295 6.295 4 C 0.288 3.712 5 C 0.053 3.947 6 N -0.360 5.360 7 C -0.006 4.006 8 C 0.573 3.427 9 O -0.556 6.556 10 N -0.677 5.677 11 C 0.111 3.889 12 C 0.144 3.856 13 H 0.051 0.949 14 C -0.123 4.123 15 C -0.131 4.131 16 C 0.112 3.888 17 N -0.601 5.601 18 C -0.241 4.241 19 H 0.093 0.907 20 C 0.032 3.968 21 N -0.901 5.901 22 Si 0.880 3.120 23 H -0.285 1.285 24 H -0.305 1.305 25 H -0.276 1.276 26 C 0.148 3.852 27 N -0.505 5.505 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.183 0.817 34 H 0.420 0.580 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.023 0.977 42 H 0.058 0.942 43 H 0.262 0.738 44 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.034 -7.684 -9.282 12.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.200 6.200 4 C 0.105 3.895 5 C -0.114 4.114 6 N -0.077 5.077 7 C -0.145 4.145 8 C 0.357 3.643 9 O -0.436 6.436 10 N -0.328 5.328 11 C -0.014 4.014 12 C 0.037 3.963 13 H 0.068 0.932 14 C -0.161 4.161 15 C -0.169 4.169 16 C -0.013 4.013 17 N -0.327 5.327 18 C -0.369 4.369 19 H 0.110 0.890 20 C -0.167 4.167 21 N -0.544 5.544 22 Si 0.710 3.290 23 H -0.212 1.212 24 H -0.233 1.233 25 H -0.202 1.202 26 C -0.011 4.011 27 N -0.234 5.234 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.200 0.800 34 H 0.261 0.739 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.041 0.959 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -3.927 -8.114 -9.109 12.815 hybrid contribution 0.279 -0.343 1.117 1.202 sum -3.647 -8.456 -7.992 12.194 Atomic orbital electron populations 1.21823 0.92704 1.02966 1.03532 1.22719 0.95043 0.80829 1.02791 1.86239 1.15964 1.31039 1.86759 1.21275 0.84994 0.91861 0.91410 1.23035 0.91719 0.94985 1.01675 1.68491 1.03065 1.32289 1.03870 1.22075 0.95918 0.90903 1.05649 1.17452 0.85221 0.84136 0.77538 1.90735 1.59524 1.40580 1.52732 1.45954 1.08768 1.07972 1.70102 1.22037 0.80107 0.98834 1.00458 1.21339 0.92900 0.91118 0.90939 0.93157 1.22518 0.95364 0.99078 0.99183 1.22720 0.98472 0.98514 0.97224 1.21932 0.88203 0.97297 0.93843 1.44894 1.03099 1.70536 1.14184 1.18461 0.79915 1.46428 0.92051 0.88970 1.25066 0.95550 0.99284 0.96837 1.69814 1.20795 1.47700 1.16057 0.86996 0.81031 0.79670 0.81286 1.21227 1.23259 1.20183 1.23449 0.89753 0.97796 0.90122 1.68196 1.05313 1.32549 1.17373 0.91526 0.90227 0.91428 0.91379 0.91312 0.79980 0.73859 0.91618 0.92583 0.91356 0.91264 0.91741 0.91214 0.95948 0.92419 0.92796 0.79935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.16 0.38 -0.71 16 2 C 0.06 0.61 6.04 37.16 0.22 0.83 16 3 O -0.30 -3.72 10.12 -18.14 -0.18 -3.90 16 4 C 0.29 4.16 7.50 -16.71 -0.13 4.04 16 5 C 0.05 0.80 11.18 -17.16 -0.19 0.61 16 6 N -0.36 -6.43 9.70 -9.49 -0.09 -6.53 16 7 C -0.01 -0.11 6.74 -82.88 -0.56 -0.67 16 8 C 0.57 11.33 7.80 -12.30 -0.10 11.23 16 9 O -0.56 -11.71 16.32 5.32 0.09 -11.62 16 10 N -0.68 -13.42 4.80 -61.22 -0.29 -13.72 16 11 C 0.11 2.07 5.18 -4.04 -0.02 2.05 16 12 C 0.14 2.64 3.34 -66.95 -0.22 2.42 16 13 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 14 C -0.12 -1.83 6.48 -24.90 -0.16 -1.99 16 15 C -0.13 -2.07 7.08 -24.59 -0.17 -2.24 16 16 C 0.11 2.35 4.73 -2.52 -0.01 2.33 16 17 N -0.60 -13.58 2.87 -162.57 -0.47 -14.04 16 18 C -0.24 -6.34 8.88 -15.06 -0.13 -6.47 16 19 H 0.09 2.53 6.55 -52.49 -0.34 2.19 16 20 C 0.03 0.91 5.45 -17.43 -0.09 0.82 16 21 N -0.90 -26.85 13.97 55.49 0.78 -26.07 16 22 Si 0.88 22.69 24.33 -169.99 -4.14 18.55 16 23 H -0.29 -7.07 6.68 56.52 0.38 -6.70 16 24 H -0.30 -8.08 7.11 56.52 0.40 -7.68 16 25 H -0.28 -7.19 6.76 56.52 0.38 -6.81 16 26 C 0.15 2.30 10.76 -17.02 -0.18 2.12 16 27 N -0.50 -7.47 9.37 -12.76 -0.12 -7.59 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.65 8.11 -51.93 -0.42 0.22 16 32 H 0.07 0.69 8.11 -51.93 -0.42 0.27 16 33 H 0.18 2.31 8.06 -52.49 -0.42 1.88 16 34 H 0.42 8.70 5.29 -40.82 -0.22 8.48 16 35 H 0.07 1.36 8.12 -51.93 -0.42 0.93 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.98 7.85 -51.93 -0.41 0.57 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.02 0.50 5.45 -51.94 -0.28 0.22 16 42 H 0.06 1.29 7.17 -51.93 -0.37 0.92 16 43 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.18 2.53 7.64 -52.49 -0.40 2.13 16 LS Contribution 359.25 15.07 5.41 5.41 Total: -1.00 -32.05 359.25 -6.66 -38.71 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.27 Total: 6.44 kcal Atomic # 6 Polarization: 15.73 SS G_CDS: -1.37 Total: 14.36 kcal Atomic # 7 Polarization: -67.75 SS G_CDS: -0.20 Total: -67.95 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.10 Total: -15.53 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.14 Total: 18.55 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.05 -6.66 -38.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028350253.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.849 kcal (2) G-P(sol) polarization free energy of solvation -32.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds