Wall clock time and date at job start Tue Mar 31 2020 13:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42893 * 109.47504 * 2 1 4 4 C 1.35482 * 117.00336 * 180.02562 * 3 2 1 5 5 C 1.39625 * 119.97971 * 180.02562 * 4 3 2 6 6 N 1.31533 * 120.03993 * 179.76294 * 5 4 3 7 7 C 1.33205 * 119.98812 * 0.46744 * 6 5 4 8 8 C 1.47910 * 120.02441 * 179.78615 * 7 6 5 9 9 O 1.21552 * 119.99970 * 179.72316 * 8 7 6 10 10 N 1.34773 * 119.99732 * 0.02562 * 8 7 6 11 11 C 1.46507 * 119.99648 * 179.72281 * 10 8 7 12 12 C 1.53005 * 109.46695 * 185.94389 * 11 10 8 13 13 H 1.08994 * 109.87433 * 300.87773 * 12 11 10 14 14 C 1.54323 * 109.87799 * 179.85991 * 12 11 10 15 15 C 1.55153 * 102.94349 * 218.38712 * 14 12 11 16 16 C 1.54909 * 101.58120 * 35.50719 * 15 14 12 17 17 N 1.47020 * 109.88186 * 62.05473 * 12 11 10 18 18 C 1.36938 * 125.65019 * 298.33023 * 17 12 11 19 19 H 1.07995 * 120.00209 * 335.97616 * 18 17 12 20 20 C 1.38818 * 119.99872 * 155.97247 * 18 17 12 21 21 N 1.31611 * 119.99591 * 159.47250 * 20 18 17 22 22 Si 1.86800 * 119.99857 * 339.47261 * 20 18 17 23 23 H 1.48494 * 109.47421 * 84.66833 * 22 20 18 24 24 H 1.48499 * 109.46725 * 204.66805 * 22 20 18 25 25 H 1.48501 * 109.47040 * 324.66352 * 22 20 18 26 26 C 1.39387 * 119.95387 * 359.51214 * 7 6 5 27 27 N 1.32080 * 119.95952 * 0.25447 * 26 7 6 28 28 H 1.08998 * 109.47088 * 59.99668 * 1 2 3 29 29 H 1.08999 * 109.47509 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46916 * 300.00376 * 1 2 3 31 31 H 1.09002 * 109.46916 * 239.99624 * 2 1 3 32 32 H 1.08998 * 109.47088 * 120.00331 * 2 1 3 33 33 H 1.07999 * 119.98360 * 0.02562 * 5 4 3 34 34 H 0.96998 * 120.00253 * 359.72482 * 10 8 7 35 35 H 1.09000 * 109.47194 * 305.94144 * 11 10 8 36 36 H 1.08994 * 109.47063 * 65.94272 * 11 10 8 37 37 H 1.09001 * 110.72497 * 336.75656 * 14 12 11 38 38 H 1.09005 * 110.71649 * 100.02378 * 14 12 11 39 39 H 1.09002 * 111.00345 * 153.57902 * 15 14 12 40 40 H 1.08998 * 111.00570 * 277.43376 * 15 14 12 41 41 H 1.08989 * 110.36944 * 81.82531 * 16 15 14 42 42 H 1.08997 * 110.36785 * 204.04483 * 16 15 14 43 43 H 0.97006 * 119.99695 * 179.97438 * 21 20 18 44 44 H 1.08000 * 120.02535 * 180.22746 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3496 1.5247 -0.0005 5 6 3.8828 2.8151 0.0000 6 7 5.1866 2.9888 0.0042 7 6 5.9990 1.9331 -0.0015 8 6 7.4652 2.1276 -0.0016 9 8 8.2061 1.1639 -0.0016 10 7 7.9798 3.3732 0.0046 11 6 9.4321 3.5657 0.0107 12 6 9.7485 5.0546 0.1663 13 1 9.3017 5.6161 -0.6541 14 6 11.2768 5.2679 0.1774 15 6 11.4643 6.3840 1.2387 16 6 10.3616 6.0249 2.2658 17 7 9.2301 5.5441 1.4520 18 6 7.9142 5.5528 1.8308 19 1 7.1365 5.5581 1.0814 20 6 7.5797 5.5546 3.1781 21 7 6.3878 5.9621 3.5596 22 14 8.8213 4.9788 4.4494 23 1 9.7195 6.1050 4.8098 24 1 8.1056 4.5087 5.6627 25 1 9.6257 3.8646 3.8865 26 6 5.4663 0.6451 -0.0016 27 7 4.1568 0.4729 -0.0011 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.2244 3.6712 0.0012 34 1 7.3886 4.1422 0.0051 35 1 9.8685 3.0127 0.8424 36 1 9.8508 3.2014 -0.9274 37 1 11.7914 4.3563 0.4813 38 1 11.6267 5.6020 -0.7994 39 1 12.4537 6.3293 1.6927 40 1 11.2888 7.3687 0.8055 41 1 10.7086 5.2379 2.9353 42 1 10.0727 6.9074 2.8364 43 1 6.1540 5.9631 4.5011 44 1 6.1238 -0.2117 -0.0024 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028350253.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:21 Heat of formation + Delta-G solvation = -20.778528 kcal Electronic energy + Delta-G solvation = -27195.937824 eV Core-core repulsion = 23341.839346 eV Total energy + Delta-G solvation = -3854.098478 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.55858 -40.74636 -39.71023 -39.17963 -35.79650 -35.13827 -34.59439 -33.26955 -31.77380 -31.72747 -30.63719 -26.96858 -26.40786 -26.01498 -24.93647 -23.71017 -22.67174 -21.61523 -21.18413 -19.77480 -19.46590 -18.99647 -18.37208 -17.63538 -17.29719 -16.97118 -16.82837 -16.29541 -16.03509 -15.87870 -15.33518 -15.19226 -15.12138 -14.88267 -14.40484 -14.26081 -14.09981 -13.62614 -13.50039 -13.40067 -13.02661 -13.00314 -12.77759 -12.70875 -12.43931 -12.41602 -12.32712 -12.07448 -11.81777 -11.75002 -11.60180 -11.39480 -11.28484 -10.75241 -10.40986 -10.10517 -9.78393 -8.96812 -8.13273 -5.40344 -0.68642 -0.14818 1.25640 1.35915 1.41921 1.61256 1.63172 2.16738 2.42123 2.63782 2.82709 2.96866 3.14603 3.28998 3.32388 3.79910 3.87820 3.92956 4.02521 4.03928 4.15022 4.19568 4.32510 4.39130 4.43019 4.47656 4.62254 4.67698 4.75724 4.82689 4.93047 4.96011 5.04294 5.05175 5.17088 5.21125 5.30221 5.49393 5.52040 5.77195 5.84291 5.90747 6.16097 6.36865 6.64024 6.81238 7.14401 7.59613 8.18002 9.05548 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016644 B = 0.003626 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.887495 B = 7720.074645 C = 8667.073558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.294 6.294 4 C 0.299 3.701 5 C 0.048 3.952 6 N -0.386 5.386 7 C -0.034 4.034 8 C 0.570 3.430 9 O -0.575 6.575 10 N -0.685 5.685 11 C 0.113 3.887 12 C 0.139 3.861 13 H 0.060 0.940 14 C -0.112 4.112 15 C -0.117 4.117 16 C 0.100 3.900 17 N -0.619 5.619 18 C -0.208 4.208 19 H 0.075 0.925 20 C -0.023 4.023 21 N -0.945 5.945 22 Si 0.926 3.074 23 H -0.272 1.272 24 H -0.319 1.319 25 H -0.282 1.282 26 C 0.157 3.843 27 N -0.504 5.504 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.204 0.796 34 H 0.415 0.585 35 H 0.042 0.958 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.011 0.989 42 H 0.037 0.963 43 H 0.256 0.744 44 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.129 -8.195 -10.815 13.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 O -0.198 6.198 4 C 0.115 3.885 5 C -0.120 4.120 6 N -0.103 5.103 7 C -0.171 4.171 8 C 0.355 3.645 9 O -0.456 6.456 10 N -0.335 5.335 11 C -0.012 4.012 12 C 0.033 3.967 13 H 0.077 0.923 14 C -0.151 4.151 15 C -0.155 4.155 16 C -0.024 4.024 17 N -0.344 5.344 18 C -0.337 4.337 19 H 0.093 0.907 20 C -0.218 4.218 21 N -0.592 5.592 22 Si 0.757 3.243 23 H -0.198 1.198 24 H -0.249 1.249 25 H -0.209 1.209 26 C -0.001 4.001 27 N -0.233 5.233 28 H 0.089 0.911 29 H 0.121 0.879 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.220 0.780 34 H 0.255 0.745 35 H 0.061 0.939 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.126 0.874 39 H 0.112 0.888 40 H 0.099 0.901 41 H 0.028 0.972 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -2.966 -8.635 -10.671 14.044 hybrid contribution -0.117 -0.226 1.474 1.496 sum -3.083 -8.861 -9.197 13.138 Atomic orbital electron populations 1.21850 0.90378 1.04541 1.03645 1.23047 0.96842 0.79370 1.02948 1.86269 1.14628 1.32992 1.85946 1.21357 0.85797 0.91575 0.89795 1.23384 0.91159 0.96220 1.01208 1.68398 1.04276 1.32933 1.04672 1.21896 0.95040 0.91882 1.08315 1.17735 0.86130 0.83805 0.76873 1.90703 1.60294 1.40885 1.53720 1.46051 1.09289 1.07885 1.70250 1.22063 0.79505 0.98774 1.00878 1.21597 0.95657 0.90655 0.88785 0.92269 1.22560 0.92247 0.99276 1.00968 1.22682 0.97745 0.99308 0.95778 1.22044 0.89370 0.95970 0.95041 1.45085 1.02361 1.71165 1.15840 1.18456 0.81605 1.42375 0.91236 0.90729 1.25506 0.96623 1.01229 0.98482 1.69913 1.22547 1.51005 1.15762 0.86231 0.79456 0.79324 0.79250 1.19838 1.24864 1.20865 1.23614 0.90222 0.97358 0.88921 1.68287 1.04885 1.32492 1.17675 0.91096 0.87906 0.91616 0.90821 0.91552 0.77961 0.74540 0.93942 0.89792 0.90484 0.87411 0.88797 0.90114 0.97184 0.94469 0.93462 0.78497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 10.28 71.98 0.74 -1.04 16 2 C 0.05 0.95 6.04 71.98 0.43 1.38 16 3 O -0.29 -7.02 10.12 -87.82 -0.89 -7.91 16 4 C 0.30 8.41 7.50 84.91 0.64 9.05 16 5 C 0.05 1.47 11.18 85.07 0.95 2.42 16 6 N -0.39 -14.03 9.70 -183.93 -1.78 -15.81 16 7 C -0.03 -1.22 6.74 41.78 0.28 -0.94 16 8 C 0.57 22.81 7.80 86.81 0.68 23.49 16 9 O -0.57 -24.29 16.32 -3.88 -0.06 -24.35 16 10 N -0.68 -27.32 4.80 -465.89 -2.24 -29.55 16 11 C 0.11 4.07 5.18 86.38 0.45 4.51 16 12 C 0.14 4.81 3.34 45.34 0.15 4.96 16 13 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 14 C -0.11 -2.88 6.48 31.78 0.21 -2.67 16 15 C -0.12 -3.26 7.08 31.98 0.23 -3.03 16 16 C 0.10 4.06 4.73 86.85 0.41 4.47 16 17 N -0.62 -27.52 2.87 -668.26 -1.92 -29.44 16 18 C -0.21 -11.08 8.88 84.03 0.75 -10.34 16 19 H 0.08 4.22 6.55 -2.91 -0.02 4.20 16 20 C -0.02 -1.34 5.45 84.86 0.46 -0.88 16 21 N -0.95 -58.29 13.97 21.65 0.30 -57.99 16 22 Si 0.93 48.04 24.33 68.60 1.67 49.71 16 23 H -0.27 -13.30 6.68 99.48 0.66 -12.64 16 24 H -0.32 -17.16 7.11 99.48 0.71 -16.45 16 25 H -0.28 -14.70 6.76 99.48 0.67 -14.03 16 26 C 0.16 4.87 10.76 84.93 0.91 5.78 16 27 N -0.50 -14.50 9.37 -307.09 -2.88 -17.38 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 1.26 8.11 -2.39 -0.02 1.24 16 32 H 0.07 1.25 8.11 -2.39 -0.02 1.23 16 33 H 0.20 5.05 8.06 -2.91 -0.02 5.03 16 34 H 0.42 17.50 5.29 -92.71 -0.49 17.01 16 35 H 0.04 1.73 8.12 -2.39 -0.02 1.71 16 36 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.08 1.88 7.85 -2.39 -0.02 1.86 16 38 H 0.11 2.02 8.14 -2.38 -0.02 2.01 16 39 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.01 0.45 5.45 -2.39 -0.01 0.44 16 42 H 0.04 1.64 7.17 -2.39 -0.02 1.62 16 43 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 44 H 0.20 5.37 7.64 -2.91 -0.02 5.35 16 Total: -1.00 -71.26 359.25 -0.05 -71.31 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.46 Total: 24.25 kcal Atomic # 6 Polarization: 29.88 SS G_CDS: 7.29 Total: 37.16 kcal Atomic # 7 Polarization: -141.67 SS G_CDS: -8.51 Total: -150.18 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -0.95 Total: -32.26 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 1.67 Total: 49.71 kcal Total: -71.26 -0.05 -71.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028350253.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.536 kcal (2) G-P(sol) polarization free energy of solvation -71.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds