Wall clock time and date at job start Tue Mar 31 2020 13:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42895 * 109.47528 * 2 1 4 4 C 1.35485 * 117.00197 * 180.02562 * 3 2 1 5 5 C 1.39628 * 119.97653 * 180.02562 * 4 3 2 6 6 N 1.31534 * 120.04173 * 179.74347 * 5 4 3 7 7 C 1.33209 * 119.98341 * 0.50643 * 6 5 4 8 8 C 1.47901 * 120.01952 * 179.74565 * 7 6 5 9 9 O 1.21555 * 119.99786 * 186.74051 * 8 7 6 10 10 N 1.34780 * 120.00497 * 6.73658 * 8 7 6 11 11 C 1.46497 * 119.99406 * 5.35646 * 10 8 7 12 12 C 1.46499 * 120.00396 * 185.35168 * 10 8 7 13 13 H 1.09008 * 110.63967 * 358.31478 * 12 10 8 14 14 C 1.55153 * 110.72220 * 234.97950 * 12 10 8 15 15 C 1.55133 * 101.48807 * 205.96960 * 14 12 10 16 16 N 1.47426 * 104.71771 * 37.29394 * 15 14 12 17 17 C 1.36931 * 125.64613 * 155.82242 * 16 15 14 18 18 H 1.08005 * 120.00232 * 197.97201 * 17 16 15 19 19 C 1.38814 * 120.00241 * 17.97068 * 17 16 15 20 20 N 1.31622 * 120.00120 * 29.08111 * 19 17 16 21 21 Si 1.86797 * 120.00230 * 209.08710 * 19 17 16 22 22 H 1.48503 * 109.47290 * 179.97438 * 21 19 17 23 23 H 1.48499 * 109.46840 * 299.99493 * 21 19 17 24 24 H 1.48505 * 109.47296 * 59.99529 * 21 19 17 25 25 C 1.47020 * 108.70588 * 335.55239 * 16 15 14 26 26 C 1.39386 * 119.95579 * 359.47040 * 7 6 5 27 27 N 1.32085 * 119.95985 * 0.27481 * 26 7 6 28 28 H 1.09004 * 109.47235 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47460 * 300.00659 * 1 2 3 30 30 H 1.08997 * 109.47138 * 60.00459 * 1 2 3 31 31 H 1.09001 * 109.47460 * 239.99341 * 2 1 3 32 32 H 1.09006 * 109.46997 * 120.00146 * 2 1 3 33 33 H 1.08009 * 119.97995 * 0.02562 * 5 4 3 34 34 H 1.08998 * 109.46886 * 275.18917 * 11 10 8 35 35 H 1.08994 * 109.47482 * 35.19433 * 11 10 8 36 36 H 1.09004 * 109.46927 * 155.19468 * 11 10 8 37 37 H 1.08997 * 111.00342 * 324.20724 * 14 12 10 38 38 H 1.08998 * 111.00493 * 88.01983 * 14 12 10 39 39 H 1.08997 * 110.49482 * 278.45290 * 15 14 12 40 40 H 1.08997 * 110.34252 * 156.05517 * 15 14 12 41 41 H 0.97007 * 119.99466 * 6.33637 * 20 19 17 42 42 H 1.08999 * 109.87982 * 120.70440 * 25 16 15 43 43 H 1.08996 * 109.88436 * 241.87298 * 25 16 15 44 44 H 1.07999 * 120.02402 * 180.30169 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3495 1.5247 -0.0005 5 6 3.8827 2.8151 0.0000 6 7 5.1865 2.9889 0.0045 7 6 5.9989 1.9332 -0.0015 8 6 7.4650 2.1277 -0.0021 9 8 8.2048 1.1719 -0.1311 10 7 7.9809 3.3647 0.1404 11 6 7.0962 4.5002 0.4131 12 6 9.4261 3.5738 0.0228 13 1 9.9384 2.6273 -0.1504 14 6 9.9832 4.2808 1.2865 15 6 11.2412 4.9869 0.7162 16 7 10.8417 5.4336 -0.6308 17 6 11.4054 6.4684 -1.3282 18 1 10.8780 6.9087 -2.1616 19 6 12.6548 6.9517 -0.9641 20 7 13.5315 6.1495 -0.3983 21 14 13.0917 8.7407 -1.2772 22 1 14.4733 9.0036 -0.8001 23 1 13.0080 9.0233 -2.7326 24 1 12.1412 9.6176 -0.5472 25 6 9.7423 4.5799 -1.1038 26 6 5.4662 0.6451 -0.0015 27 7 4.1566 0.4729 -0.0010 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 3.2241 3.6712 0.0012 34 1 6.6984 4.8844 -0.5261 35 1 6.2738 4.1752 1.0503 36 1 7.6585 5.2857 0.9179 37 1 9.2678 5.0048 1.6765 38 1 10.2573 3.5545 2.0517 39 1 12.0752 4.2880 0.6524 40 1 11.5089 5.8428 1.3358 41 1 13.3410 5.2016 -0.3189 42 1 8.8635 5.1896 -1.3137 43 1 10.0485 4.0453 -2.0030 44 1 6.1238 -0.2116 -0.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033709419.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:27 Heat of formation + Delta-G solvation = 24.065120 kcal Electronic energy + Delta-G solvation = -26670.650582 eV Core-core repulsion = 22818.496671 eV Total energy + Delta-G solvation = -3852.153911 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.83584 -39.96778 -38.81304 -37.47400 -35.29421 -34.32583 -32.73242 -32.20497 -30.77320 -29.14133 -27.77129 -26.74899 -25.61552 -25.00623 -24.07315 -23.16404 -21.35480 -20.28895 -19.25505 -19.12904 -18.34794 -17.52142 -17.24663 -16.98187 -16.46643 -15.58575 -15.27294 -15.23841 -14.57792 -14.48128 -14.25434 -13.93669 -13.62254 -13.29156 -13.17746 -13.12598 -12.99487 -12.91254 -12.70136 -12.23295 -12.14490 -11.74330 -11.63301 -11.28719 -11.18792 -11.02166 -10.74720 -10.69685 -10.52245 -10.34151 -10.04415 -9.99545 -9.53544 -9.42937 -9.18213 -8.45194 -8.35778 -6.93244 -6.08960 -3.14016 0.13880 0.60641 2.30522 2.55807 2.92683 3.43823 3.51542 3.55283 3.57650 3.71526 3.73507 4.02832 4.46309 4.48075 4.50610 4.61691 4.77652 4.85477 5.05739 5.15012 5.22002 5.24249 5.30189 5.37010 5.45162 5.47979 5.56539 5.59729 5.69291 5.83225 5.99705 6.07641 6.16655 6.37164 6.47798 6.52428 6.61794 6.66740 6.84441 6.94101 7.03565 7.19562 7.46777 7.81167 8.09546 8.49767 9.02629 9.82043 10.37303 11.22853 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.034588 B = 0.002369 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.329034 B =11817.931514 C =12292.607351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.295 6.295 4 C 0.295 3.705 5 C 0.040 3.960 6 N -0.367 5.367 7 C -0.013 4.013 8 C 0.575 3.425 9 O -0.537 6.537 10 N -0.579 5.579 11 C 0.086 3.914 12 C 0.125 3.875 13 H 0.106 0.894 14 C -0.144 4.144 15 C 0.146 3.854 16 N -0.600 5.600 17 C -0.337 4.337 18 H 0.064 0.936 19 C -0.025 4.025 20 N -0.913 5.913 21 Si 1.064 2.936 22 H -0.285 1.285 23 H -0.293 1.293 24 H -0.294 1.294 25 C 0.129 3.871 26 C 0.159 3.841 27 N -0.503 5.503 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.184 0.816 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.030 0.970 40 H 0.054 0.946 41 H 0.269 0.731 42 H 0.032 0.968 43 H 0.026 0.974 44 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.483 -10.780 3.733 27.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.014 4.014 3 O -0.199 6.199 4 C 0.111 3.889 5 C -0.127 4.127 6 N -0.084 5.084 7 C -0.152 4.152 8 C 0.360 3.640 9 O -0.414 6.414 10 N -0.309 5.309 11 C -0.057 4.057 12 C 0.022 3.978 13 H 0.124 0.876 14 C -0.183 4.183 15 C 0.020 3.980 16 N -0.327 5.327 17 C -0.465 4.465 18 H 0.082 0.918 19 C -0.227 4.227 20 N -0.553 5.553 21 Si 0.894 3.106 22 H -0.211 1.211 23 H -0.220 1.220 24 H -0.221 1.221 25 C 0.003 3.997 26 C -0.001 4.001 27 N -0.232 5.232 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.201 0.799 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.047 0.953 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.050 0.950 43 H 0.044 0.956 44 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -24.082 -9.867 3.838 26.306 hybrid contribution -1.294 -1.389 -0.407 1.942 sum -25.376 -11.256 3.430 27.971 Atomic orbital electron populations 1.21831 0.92472 1.03220 1.03556 1.22775 0.95226 0.80434 1.02989 1.86246 1.15803 1.31481 1.86407 1.21313 0.85183 0.91787 0.90605 1.23152 0.91971 0.95156 1.02398 1.68991 1.02793 1.31702 1.04956 1.22008 0.95614 0.91065 1.06487 1.17502 0.85319 0.83492 0.77647 1.90799 1.59428 1.40017 1.51203 1.47717 1.08130 1.07261 1.67776 1.22085 0.93298 0.88436 1.01836 1.22315 0.78194 1.00328 0.96968 0.87557 1.23239 0.99447 0.99382 0.96261 1.21558 0.92754 0.96851 0.86837 1.44511 1.39349 1.35516 1.13364 1.19706 1.01563 1.08706 1.16485 0.91796 1.25771 0.90791 1.06011 1.00127 1.70782 1.33353 1.05698 1.45495 0.83543 0.75889 0.75447 0.75767 1.21103 1.22015 1.22100 1.21569 0.92701 0.91344 0.94131 1.23524 0.89788 0.97760 0.88982 1.68267 1.05282 1.32526 1.17135 0.90011 0.91446 0.91429 0.91156 0.91174 0.79923 0.92056 0.89796 0.91068 0.91012 0.91466 0.95274 0.92770 0.92017 0.95029 0.95584 0.79634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 10.28 37.15 0.38 -0.27 16 2 C 0.06 0.39 6.04 37.15 0.22 0.62 16 3 O -0.29 -2.49 10.12 -18.15 -0.18 -2.68 16 4 C 0.29 2.86 7.50 -16.71 -0.13 2.73 16 5 C 0.04 0.36 11.18 -17.16 -0.19 0.17 16 6 N -0.37 -4.16 6.34 -9.49 -0.06 -4.22 16 7 C -0.01 -0.17 6.55 -82.89 -0.54 -0.71 16 8 C 0.57 9.01 7.64 -12.30 -0.09 8.91 16 9 O -0.54 -9.70 15.74 5.32 0.08 -9.62 16 10 N -0.58 -9.20 2.88 -172.93 -0.50 -9.70 16 11 C 0.09 1.15 7.88 59.85 0.47 1.63 16 12 C 0.12 2.32 3.36 -66.10 -0.22 2.10 16 13 H 0.11 2.10 7.00 -51.92 -0.36 1.73 16 14 C -0.14 -2.64 6.60 -24.46 -0.16 -2.80 16 15 C 0.15 3.40 5.36 -2.41 -0.01 3.39 16 16 N -0.60 -15.39 3.28 -169.94 -0.56 -15.95 16 17 C -0.34 -9.60 10.00 -15.06 -0.15 -9.75 16 18 H 0.06 1.82 7.98 -52.48 -0.42 1.40 16 19 C -0.02 -0.72 5.07 -17.43 -0.09 -0.80 16 20 N -0.91 -27.74 12.97 55.49 0.72 -27.02 16 21 Si 1.06 25.43 30.01 -169.99 -5.10 20.33 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 25 C 0.13 2.81 6.88 -3.07 -0.02 2.79 16 26 C 0.16 1.78 10.76 -17.02 -0.18 1.60 16 27 N -0.50 -5.34 9.37 -12.76 -0.12 -5.46 16 28 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 32 H 0.07 0.46 8.11 -51.93 -0.42 0.03 16 33 H 0.18 1.12 8.06 -52.48 -0.42 0.69 16 34 H 0.06 0.82 7.94 -51.93 -0.41 0.40 16 35 H 0.08 1.00 5.77 -51.93 -0.30 0.70 16 36 H 0.07 0.99 6.13 -51.93 -0.32 0.67 16 37 H 0.07 1.23 6.14 -51.93 -0.32 0.92 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.03 0.73 6.84 -51.93 -0.36 0.37 16 40 H 0.05 1.36 8.03 -51.93 -0.42 0.94 16 41 H 0.27 8.22 6.23 -40.82 -0.25 7.96 16 42 H 0.03 0.67 7.06 -51.93 -0.37 0.31 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.19 1.88 7.65 -52.49 -0.40 1.48 16 LS Contribution 358.87 15.07 5.41 5.41 Total: -1.00 -33.30 358.87 -7.12 -40.42 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -6.10 Total: -1.12 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: -0.72 Total: 9.60 kcal Atomic # 7 Polarization: -61.83 SS G_CDS: -0.52 Total: -62.35 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -0.10 Total: -12.29 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.10 Total: 20.33 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.30 -7.12 -40.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033709419.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.486 kcal (2) G-P(sol) polarization free energy of solvation -33.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds