Wall clock time and date at job start Tue Mar 31 2020 13:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42895 * 109.47528 * 2 1 4 4 C 1.35485 * 117.00197 * 180.02562 * 3 2 1 5 5 C 1.39628 * 119.97653 * 180.02562 * 4 3 2 6 6 N 1.31534 * 120.04173 * 179.74347 * 5 4 3 7 7 C 1.33209 * 119.98341 * 0.50643 * 6 5 4 8 8 C 1.47901 * 120.01952 * 179.74565 * 7 6 5 9 9 O 1.21555 * 119.99786 * 186.74051 * 8 7 6 10 10 N 1.34780 * 120.00497 * 6.73658 * 8 7 6 11 11 C 1.46497 * 119.99406 * 5.35646 * 10 8 7 12 12 C 1.46499 * 120.00396 * 185.35168 * 10 8 7 13 13 H 1.09008 * 110.63967 * 358.31478 * 12 10 8 14 14 C 1.55153 * 110.72220 * 234.97950 * 12 10 8 15 15 C 1.55133 * 101.48807 * 205.96960 * 14 12 10 16 16 N 1.47426 * 104.71771 * 37.29394 * 15 14 12 17 17 C 1.36931 * 125.64613 * 155.82242 * 16 15 14 18 18 H 1.08005 * 120.00232 * 197.97201 * 17 16 15 19 19 C 1.38814 * 120.00241 * 17.97068 * 17 16 15 20 20 N 1.31622 * 120.00120 * 29.08111 * 19 17 16 21 21 Si 1.86797 * 120.00230 * 209.08710 * 19 17 16 22 22 H 1.48503 * 109.47290 * 179.97438 * 21 19 17 23 23 H 1.48499 * 109.46840 * 299.99493 * 21 19 17 24 24 H 1.48505 * 109.47296 * 59.99529 * 21 19 17 25 25 C 1.47020 * 108.70588 * 335.55239 * 16 15 14 26 26 C 1.39386 * 119.95579 * 359.47040 * 7 6 5 27 27 N 1.32085 * 119.95985 * 0.27481 * 26 7 6 28 28 H 1.09004 * 109.47235 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47460 * 300.00659 * 1 2 3 30 30 H 1.08997 * 109.47138 * 60.00459 * 1 2 3 31 31 H 1.09001 * 109.47460 * 239.99341 * 2 1 3 32 32 H 1.09006 * 109.46997 * 120.00146 * 2 1 3 33 33 H 1.08009 * 119.97995 * 0.02562 * 5 4 3 34 34 H 1.08998 * 109.46886 * 275.18917 * 11 10 8 35 35 H 1.08994 * 109.47482 * 35.19433 * 11 10 8 36 36 H 1.09004 * 109.46927 * 155.19468 * 11 10 8 37 37 H 1.08997 * 111.00342 * 324.20724 * 14 12 10 38 38 H 1.08998 * 111.00493 * 88.01983 * 14 12 10 39 39 H 1.08997 * 110.49482 * 278.45290 * 15 14 12 40 40 H 1.08997 * 110.34252 * 156.05517 * 15 14 12 41 41 H 0.97007 * 119.99466 * 6.33637 * 20 19 17 42 42 H 1.08999 * 109.87982 * 120.70440 * 25 16 15 43 43 H 1.08996 * 109.88436 * 241.87298 * 25 16 15 44 44 H 1.07999 * 120.02402 * 180.30169 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3495 1.5247 -0.0005 5 6 3.8827 2.8151 0.0000 6 7 5.1865 2.9889 0.0045 7 6 5.9989 1.9332 -0.0015 8 6 7.4650 2.1277 -0.0021 9 8 8.2048 1.1719 -0.1311 10 7 7.9809 3.3647 0.1404 11 6 7.0962 4.5002 0.4131 12 6 9.4261 3.5738 0.0228 13 1 9.9384 2.6273 -0.1504 14 6 9.9832 4.2808 1.2865 15 6 11.2412 4.9869 0.7162 16 7 10.8417 5.4336 -0.6308 17 6 11.4054 6.4684 -1.3282 18 1 10.8780 6.9087 -2.1616 19 6 12.6548 6.9517 -0.9641 20 7 13.5315 6.1495 -0.3983 21 14 13.0917 8.7407 -1.2772 22 1 14.4733 9.0036 -0.8001 23 1 13.0080 9.0233 -2.7326 24 1 12.1412 9.6176 -0.5472 25 6 9.7423 4.5799 -1.1038 26 6 5.4662 0.6451 -0.0015 27 7 4.1566 0.4729 -0.0010 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 3.2241 3.6712 0.0012 34 1 6.6984 4.8844 -0.5261 35 1 6.2738 4.1752 1.0503 36 1 7.6585 5.2857 0.9179 37 1 9.2678 5.0048 1.6765 38 1 10.2573 3.5545 2.0517 39 1 12.0752 4.2880 0.6524 40 1 11.5089 5.8428 1.3358 41 1 13.3410 5.2016 -0.3189 42 1 8.8635 5.1896 -1.3137 43 1 10.0485 4.0453 -2.0030 44 1 6.1238 -0.2116 -0.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033709419.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:25 Heat of formation + Delta-G solvation = 0.816937 kcal Electronic energy + Delta-G solvation = -26671.658698 eV Core-core repulsion = 22818.496671 eV Total energy + Delta-G solvation = -3853.162028 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.68926 -41.14272 -39.71500 -39.00973 -36.63965 -35.39802 -34.15111 -33.23158 -31.63422 -30.95203 -29.38093 -27.92230 -26.60255 -26.30940 -25.55903 -23.72272 -22.63354 -22.20772 -20.62919 -19.83939 -19.58813 -19.27609 -18.33953 -17.78663 -17.62572 -16.67863 -16.48358 -16.09200 -15.99696 -15.80814 -15.45523 -15.27828 -15.13889 -14.89072 -14.39609 -14.27728 -13.88339 -13.84030 -13.62693 -13.47744 -13.38883 -12.73195 -12.62623 -12.58263 -12.52293 -12.46112 -12.38409 -12.10780 -11.88627 -11.82212 -11.71758 -11.61148 -11.49537 -10.54654 -10.32976 -10.03585 -9.69596 -9.06110 -8.34620 -5.37294 -0.73974 -0.18655 1.47145 1.56802 1.59268 1.66922 1.77438 1.86494 2.51799 2.64393 2.77527 2.83064 3.15844 3.24056 3.45155 3.56780 3.69119 3.80764 3.90540 4.03978 4.07664 4.15074 4.24922 4.34206 4.39267 4.43515 4.46226 4.58399 4.74058 4.75637 4.88761 4.91418 4.93443 4.96164 5.01709 5.10911 5.21499 5.23308 5.41067 5.65768 5.83422 5.85682 6.18619 6.28356 6.41446 6.84054 6.88446 7.66764 8.24481 8.95885 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.034588 B = 0.002369 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.329034 B =11817.931514 C =12292.607351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 O -0.293 6.293 4 C 0.300 3.700 5 C 0.052 3.948 6 N -0.374 5.374 7 C -0.031 4.031 8 C 0.575 3.425 9 O -0.568 6.568 10 N -0.581 5.581 11 C 0.090 3.910 12 C 0.141 3.859 13 H 0.092 0.908 14 C -0.123 4.123 15 C 0.149 3.851 16 N -0.620 5.620 17 C -0.349 4.349 18 H 0.060 0.940 19 C -0.077 4.077 20 N -0.940 5.940 21 Si 1.118 2.882 22 H -0.291 1.291 23 H -0.275 1.275 24 H -0.277 1.277 25 C 0.131 3.869 26 C 0.162 3.838 27 N -0.510 5.510 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.218 0.782 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.007 0.993 40 H 0.031 0.969 41 H 0.254 0.746 42 H 0.042 0.958 43 H 0.007 0.993 44 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.614 -10.252 4.174 30.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.197 6.197 4 C 0.115 3.885 5 C -0.116 4.116 6 N -0.092 5.092 7 C -0.168 4.168 8 C 0.363 3.637 9 O -0.447 6.447 10 N -0.311 5.311 11 C -0.052 4.052 12 C 0.036 3.964 13 H 0.110 0.890 14 C -0.162 4.162 15 C 0.023 3.977 16 N -0.347 5.347 17 C -0.477 4.477 18 H 0.078 0.922 19 C -0.273 4.273 20 N -0.582 5.582 21 Si 0.942 3.058 22 H -0.218 1.218 23 H -0.201 1.201 24 H -0.203 1.203 25 C 0.004 3.996 26 C 0.004 3.996 27 N -0.240 5.240 28 H 0.117 0.883 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.234 0.766 34 H 0.082 0.918 35 H 0.122 0.878 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.025 0.975 40 H 0.050 0.950 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.025 0.975 44 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -27.258 -9.362 4.277 29.136 hybrid contribution -0.525 -1.643 -0.595 1.824 sum -27.782 -11.005 3.682 30.108 Atomic orbital electron populations 1.21846 0.90581 1.04421 1.03708 1.23001 0.96690 0.79445 1.02890 1.86273 1.14905 1.32757 1.85747 1.21564 0.85674 0.91925 0.89290 1.23673 0.91374 0.96041 1.00494 1.68892 1.03667 1.31282 1.05364 1.21515 0.93957 0.92042 1.09290 1.17888 0.86593 0.82747 0.76500 1.90776 1.60639 1.40899 1.52431 1.47695 1.06965 1.08316 1.68130 1.22200 0.93231 0.87450 1.02308 1.21870 0.80283 0.98574 0.95636 0.88978 1.23094 0.97134 0.99642 0.96358 1.21468 0.94490 0.95794 0.85960 1.44767 1.39789 1.35796 1.14371 1.19976 1.01628 1.09481 1.16605 0.92247 1.27255 0.90910 1.09332 0.99821 1.70907 1.34323 1.05121 1.47809 0.82829 0.75477 0.70736 0.76767 1.21751 1.20107 1.20289 1.21613 0.91707 0.91589 0.94646 1.23535 0.90139 0.97400 0.88532 1.68307 1.04928 1.33062 1.17675 0.88318 0.91204 0.91322 0.91370 0.91187 0.76553 0.91841 0.87807 0.91423 0.89195 0.89264 0.97548 0.95016 0.93637 0.94014 0.97484 0.79235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.28 71.98 0.74 -0.14 16 2 C 0.05 0.59 6.04 71.98 0.43 1.02 16 3 O -0.29 -4.15 10.12 -87.86 -0.89 -5.04 16 4 C 0.30 5.04 7.50 84.92 0.64 5.68 16 5 C 0.05 0.79 11.18 85.07 0.95 1.74 16 6 N -0.37 -7.59 6.34 -183.93 -1.17 -8.76 16 7 C -0.03 -0.76 6.55 41.77 0.27 -0.48 16 8 C 0.58 17.69 7.64 86.80 0.66 18.36 16 9 O -0.57 -20.66 15.74 -3.89 -0.06 -20.73 16 10 N -0.58 -17.93 2.88 -819.30 -2.36 -20.29 16 11 C 0.09 2.23 7.88 127.77 1.01 3.23 16 12 C 0.14 5.22 3.36 46.18 0.15 5.38 16 13 H 0.09 3.71 7.00 -2.38 -0.02 3.70 16 14 C -0.12 -4.44 6.60 32.06 0.21 -4.23 16 15 C 0.15 7.11 5.36 86.93 0.47 7.58 16 16 N -0.62 -32.51 3.28 -691.56 -2.27 -34.77 16 17 C -0.35 -20.19 10.00 84.04 0.84 -19.35 16 18 H 0.06 3.42 7.98 -2.91 -0.02 3.40 16 19 C -0.08 -4.48 5.07 84.86 0.43 -4.05 16 20 N -0.94 -58.69 12.97 21.65 0.28 -58.41 16 21 Si 1.12 51.48 30.01 68.60 2.06 53.53 16 22 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 23 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 25 C 0.13 5.76 6.88 86.73 0.60 6.35 16 26 C 0.16 3.47 10.76 84.93 0.91 4.38 16 27 N -0.51 -9.91 9.37 -307.09 -2.88 -12.79 16 28 H 0.10 0.27 8.14 -2.38 -0.02 0.25 16 29 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.07 0.78 8.11 -2.39 -0.02 0.76 16 32 H 0.07 0.77 8.11 -2.38 -0.02 0.75 16 33 H 0.22 1.70 8.06 -2.91 -0.02 1.68 16 34 H 0.06 1.56 7.94 -2.39 -0.02 1.54 16 35 H 0.10 2.19 5.77 -2.39 -0.01 2.18 16 36 H 0.07 1.73 6.13 -2.38 -0.01 1.72 16 37 H 0.09 2.93 6.14 -2.39 -0.01 2.92 16 38 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 39 H 0.01 0.35 6.84 -2.39 -0.02 0.33 16 40 H 0.03 1.63 8.03 -2.39 -0.02 1.61 16 41 H 0.25 16.20 6.23 -92.70 -0.58 15.63 16 42 H 0.04 1.76 7.06 -2.39 -0.02 1.74 16 43 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 44 H 0.19 3.76 7.65 -2.91 -0.02 3.74 16 Total: -1.00 -73.36 358.87 2.25 -71.12 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 1.21 Total: 10.67 kcal Atomic # 6 Polarization: 17.15 SS G_CDS: 8.32 Total: 25.47 kcal Atomic # 7 Polarization: -126.63 SS G_CDS: -8.39 Total: -135.02 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.95 Total: -25.77 kcal Atomic # 14 Polarization: 51.48 SS G_CDS: 2.06 Total: 53.53 kcal Total: -73.36 2.25 -71.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033709419.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.934 kcal (2) G-P(sol) polarization free energy of solvation -73.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds