Wall clock time and date at job start Tue Mar 31 2020 13:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47203 * 2 1 4 4 C 1.35484 * 117.00098 * 179.97438 * 3 2 1 5 5 C 1.39630 * 119.97913 * 180.02562 * 4 3 2 6 6 N 1.31537 * 120.04354 * 179.74732 * 5 4 3 7 7 C 1.33207 * 119.98268 * 0.50601 * 6 5 4 8 8 C 1.47907 * 120.02329 * 179.74769 * 7 6 5 9 9 O 1.21548 * 120.00194 * 186.15771 * 8 7 6 10 10 N 1.34786 * 119.99785 * 6.15089 * 8 7 6 11 11 C 1.46501 * 119.99741 * 5.57861 * 10 8 7 12 12 C 1.46493 * 119.99670 * 185.57790 * 10 8 7 13 13 H 1.09000 * 110.91974 * 356.09810 * 12 10 8 14 14 C 1.55164 * 111.00423 * 120.00648 * 12 10 8 15 15 C 1.54316 * 103.10536 * 153.66309 * 14 12 10 16 16 N 1.47023 * 107.27058 * 337.71172 * 15 14 12 17 17 C 1.36936 * 125.65012 * 178.90563 * 16 15 14 18 18 H 1.08005 * 120.00236 * 180.02562 * 17 16 15 19 19 C 1.38810 * 119.99745 * 0.02841 * 17 16 15 20 20 N 1.31614 * 120.00143 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 119.99817 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47065 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47084 * 119.99790 * 21 19 17 24 24 H 1.48500 * 109.46948 * 239.99774 * 21 19 17 25 25 C 1.47429 * 108.70399 * 358.94529 * 16 15 14 26 26 C 1.39395 * 119.95681 * 359.47041 * 7 6 5 27 27 N 1.32078 * 119.95599 * 0.27823 * 26 7 6 28 28 H 1.08999 * 109.47092 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46939 * 300.00340 * 1 2 3 30 30 H 1.08999 * 109.46662 * 60.00030 * 1 2 3 31 31 H 1.08996 * 109.47590 * 239.99983 * 2 1 3 32 32 H 1.09001 * 109.47357 * 120.00216 * 2 1 3 33 33 H 1.08006 * 119.97971 * 359.97438 * 5 4 3 34 34 H 1.09005 * 109.46963 * 275.41455 * 11 10 8 35 35 H 1.08999 * 109.47080 * 35.41196 * 11 10 8 36 36 H 1.09000 * 109.46627 * 155.41546 * 11 10 8 37 37 H 1.08997 * 110.71844 * 35.20408 * 14 12 10 38 38 H 1.09005 * 110.71351 * 272.11258 * 14 12 10 39 39 H 1.08998 * 109.88607 * 97.13315 * 15 14 12 40 40 H 1.09000 * 109.88070 * 218.14579 * 15 14 12 41 41 H 0.97006 * 120.00088 * 180.02562 * 20 19 17 42 42 H 1.09001 * 110.36829 * 142.96158 * 25 16 15 43 43 H 1.08999 * 110.36174 * 265.28828 * 25 16 15 44 44 H 1.07994 * 120.02073 * 180.29871 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3495 1.5248 0.0005 5 6 3.8827 2.8152 0.0011 6 7 5.1865 2.9891 0.0067 7 6 5.9989 1.9334 0.0015 8 6 7.4651 2.1278 0.0021 9 8 8.2051 1.1708 -0.1154 10 7 7.9806 3.3663 0.1329 11 6 7.0958 4.5038 0.3967 12 6 9.4255 3.5748 0.0113 13 1 9.9464 2.6258 -0.1154 14 6 9.7510 4.5476 -1.1529 15 6 11.0999 5.1643 -0.7268 16 7 11.2075 5.0135 0.7317 17 6 12.2685 5.4138 1.4993 18 1 12.2515 5.2572 2.5678 19 6 13.3657 6.0210 0.9042 20 7 13.3866 6.2115 -0.3980 21 14 14.8134 6.5665 1.9513 22 1 14.5452 6.2404 3.3750 23 1 16.0413 5.8610 1.5042 24 1 15.0042 8.0321 1.8070 25 6 9.9843 4.3591 1.2308 26 6 5.4662 0.6452 0.0015 27 7 4.1567 0.4730 0.0009 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 3.2241 3.6713 0.0007 34 1 6.6933 4.8771 -0.5451 35 1 6.2765 4.1851 1.0410 36 1 7.6595 5.2956 0.8902 37 1 8.9844 5.3178 -1.2376 38 1 9.8549 4.0040 -2.0920 39 1 11.9193 4.6371 -1.2155 40 1 11.1261 6.2203 -0.9956 41 1 14.1535 6.6354 -0.8139 42 1 10.2253 3.6740 2.0437 43 1 9.2636 5.1059 1.5639 44 1 6.1238 -0.2114 0.0022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033709420.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:30 Heat of formation + Delta-G solvation = 28.407593 kcal Electronic energy + Delta-G solvation = -26591.401968 eV Core-core repulsion = 22739.436361 eV Total energy + Delta-G solvation = -3851.965607 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.79534 -39.87711 -38.74523 -37.28296 -35.19570 -34.22867 -32.68839 -32.06271 -30.73968 -29.18775 -27.49770 -26.77686 -25.61488 -25.07103 -24.11969 -23.13593 -21.26871 -20.10295 -19.20390 -19.09985 -18.30753 -17.24540 -16.95751 -16.86203 -16.34413 -15.53682 -15.22592 -15.15700 -14.62395 -14.47483 -14.26491 -14.04942 -13.57416 -13.16814 -13.13175 -12.92079 -12.87468 -12.68433 -12.37250 -12.11378 -12.08278 -11.72079 -11.70214 -11.25800 -11.14296 -10.92513 -10.84406 -10.72932 -10.41437 -10.16070 -10.03938 -9.79091 -9.70194 -9.36022 -9.14522 -8.61717 -8.32164 -6.83034 -5.70669 -3.04806 0.17835 0.64014 2.33457 2.61848 2.99835 3.41296 3.46718 3.48908 3.49335 3.61036 3.75818 4.06497 4.49434 4.49973 4.51857 4.55028 4.81037 4.87787 5.08556 5.18215 5.31917 5.36221 5.42772 5.46229 5.49797 5.59403 5.66376 5.72879 5.81325 5.88149 6.12674 6.26762 6.31548 6.50179 6.54617 6.59405 6.68215 6.71915 6.94733 7.23592 7.53061 7.57730 7.62128 7.83354 8.16908 8.25854 9.21884 9.81771 10.46773 11.40910 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.043417 B = 0.002253 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.756972 B =12426.697093 C =12525.962760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.295 6.295 4 C 0.294 3.706 5 C 0.039 3.961 6 N -0.367 5.367 7 C -0.012 4.012 8 C 0.573 3.427 9 O -0.536 6.536 10 N -0.578 5.578 11 C 0.084 3.916 12 C 0.120 3.880 13 H 0.108 0.892 14 C -0.151 4.151 15 C 0.180 3.820 16 N -0.603 5.603 17 C -0.227 4.227 18 H 0.079 0.921 19 C -0.008 4.008 20 N -0.921 5.921 21 Si 0.913 3.087 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.291 1.291 25 C 0.131 3.869 26 C 0.158 3.842 27 N -0.503 5.503 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.183 0.817 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.046 0.954 41 H 0.252 0.748 42 H 0.042 0.958 43 H 0.026 0.974 44 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.915 -9.558 -0.529 27.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.014 4.014 3 O -0.200 6.200 4 C 0.110 3.890 5 C -0.127 4.127 6 N -0.085 5.085 7 C -0.151 4.151 8 C 0.359 3.641 9 O -0.414 6.414 10 N -0.308 5.308 11 C -0.059 4.059 12 C 0.017 3.983 13 H 0.126 0.874 14 C -0.190 4.190 15 C 0.055 3.945 16 N -0.329 5.329 17 C -0.356 4.356 18 H 0.097 0.903 19 C -0.205 4.205 20 N -0.569 5.569 21 Si 0.744 3.256 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.218 1.218 25 C 0.004 3.996 26 C -0.001 4.001 27 N -0.232 5.232 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.200 0.800 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.043 0.957 44 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -25.504 -9.780 -0.608 27.321 hybrid contribution 0.682 0.163 0.420 0.818 sum -24.821 -9.617 -0.188 26.620 Atomic orbital electron populations 1.21830 0.92502 1.03203 1.03537 1.22770 0.95199 0.80464 1.02987 1.86243 1.15838 1.31447 1.86458 1.21310 0.85165 0.91803 0.90721 1.23145 0.92004 0.95122 1.02465 1.68997 1.02750 1.31717 1.05004 1.22053 0.95706 0.91025 1.06270 1.17497 0.85228 0.83577 0.77812 1.90802 1.59364 1.39966 1.51224 1.47684 1.08284 1.06975 1.67825 1.22120 0.93468 0.88630 1.01693 1.22630 0.77677 1.00461 0.97578 0.87392 1.23235 1.00583 0.98078 0.97143 1.21146 0.90585 0.98874 0.83942 1.44384 1.15743 1.69469 1.03335 1.19102 0.93704 1.32286 0.90467 0.90294 1.24817 0.98454 1.01170 0.96019 1.69969 1.30395 1.48392 1.08130 0.86023 0.82454 0.77979 0.79171 1.20490 1.21731 1.21769 1.21858 0.89730 0.94112 0.93934 1.23532 0.89761 0.97817 0.89003 1.68260 1.05309 1.32539 1.17112 0.90029 0.91451 0.91449 0.91177 0.91171 0.79974 0.92275 0.89845 0.90814 0.92002 0.91948 0.93289 0.93598 0.93758 0.93969 0.95700 0.79628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 10.28 37.16 0.38 -0.27 16 2 C 0.06 0.40 6.04 37.16 0.22 0.62 16 3 O -0.30 -2.50 10.12 -18.14 -0.18 -2.68 16 4 C 0.29 2.85 7.50 -16.71 -0.13 2.72 16 5 C 0.04 0.35 11.18 -17.16 -0.19 0.16 16 6 N -0.37 -4.12 6.33 -9.48 -0.06 -4.18 16 7 C -0.01 -0.15 6.55 -82.88 -0.54 -0.69 16 8 C 0.57 9.08 7.64 -12.30 -0.09 8.99 16 9 O -0.54 -9.88 15.74 5.32 0.08 -9.80 16 10 N -0.58 -9.21 2.92 -172.26 -0.50 -9.71 16 11 C 0.08 1.10 8.03 59.85 0.48 1.58 16 12 C 0.12 2.27 3.48 -65.52 -0.23 2.04 16 13 H 0.11 2.23 7.02 -51.93 -0.36 1.87 16 14 C -0.15 -2.91 6.53 -24.90 -0.16 -3.07 16 15 C 0.18 4.39 5.37 -3.07 -0.02 4.37 16 16 N -0.60 -15.51 3.40 -169.76 -0.58 -16.09 16 17 C -0.23 -6.38 10.28 -15.06 -0.15 -6.53 16 18 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 19 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 20 N -0.92 -27.15 10.31 55.49 0.57 -26.58 16 21 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 25 C 0.13 2.76 6.79 -2.26 -0.02 2.74 16 26 C 0.16 1.80 10.76 -17.02 -0.18 1.61 16 27 N -0.50 -5.37 9.37 -12.76 -0.12 -5.49 16 28 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 32 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 33 H 0.18 1.09 8.06 -52.48 -0.42 0.67 16 34 H 0.06 0.73 8.00 -51.93 -0.42 0.31 16 35 H 0.08 1.00 5.78 -51.93 -0.30 0.70 16 36 H 0.07 1.01 5.96 -51.93 -0.31 0.70 16 37 H 0.06 1.10 7.33 -51.93 -0.38 0.72 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.05 1.33 7.38 -51.93 -0.38 0.94 16 40 H 0.05 1.22 7.51 -51.93 -0.39 0.83 16 41 H 0.25 7.19 8.31 -40.82 -0.34 6.86 16 42 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.03 0.51 5.98 -51.93 -0.31 0.20 16 44 H 0.19 1.92 7.65 -52.49 -0.40 1.52 16 LS Contribution 358.72 15.07 5.41 5.41 Total: -1.00 -32.46 358.72 -7.31 -39.77 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -6.18 Total: -1.78 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: -0.72 Total: 13.94 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: -0.69 Total: -62.06 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.10 Total: -12.48 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.46 -7.31 -39.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033709420.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.178 kcal (2) G-P(sol) polarization free energy of solvation -32.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds