Wall clock time and date at job start Tue Mar 31 2020 13:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47203 * 2 1 4 4 C 1.35484 * 117.00098 * 179.97438 * 3 2 1 5 5 C 1.39630 * 119.97913 * 180.02562 * 4 3 2 6 6 N 1.31537 * 120.04354 * 179.74732 * 5 4 3 7 7 C 1.33207 * 119.98268 * 0.50601 * 6 5 4 8 8 C 1.47907 * 120.02329 * 179.74769 * 7 6 5 9 9 O 1.21548 * 120.00194 * 186.15771 * 8 7 6 10 10 N 1.34786 * 119.99785 * 6.15089 * 8 7 6 11 11 C 1.46501 * 119.99741 * 5.57861 * 10 8 7 12 12 C 1.46493 * 119.99670 * 185.57790 * 10 8 7 13 13 H 1.09000 * 110.91974 * 356.09810 * 12 10 8 14 14 C 1.55164 * 111.00423 * 120.00648 * 12 10 8 15 15 C 1.54316 * 103.10536 * 153.66309 * 14 12 10 16 16 N 1.47023 * 107.27058 * 337.71172 * 15 14 12 17 17 C 1.36936 * 125.65012 * 178.90563 * 16 15 14 18 18 H 1.08005 * 120.00236 * 180.02562 * 17 16 15 19 19 C 1.38810 * 119.99745 * 0.02841 * 17 16 15 20 20 N 1.31614 * 120.00143 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 119.99817 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47065 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47084 * 119.99790 * 21 19 17 24 24 H 1.48500 * 109.46948 * 239.99774 * 21 19 17 25 25 C 1.47429 * 108.70399 * 358.94529 * 16 15 14 26 26 C 1.39395 * 119.95681 * 359.47041 * 7 6 5 27 27 N 1.32078 * 119.95599 * 0.27823 * 26 7 6 28 28 H 1.08999 * 109.47092 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46939 * 300.00340 * 1 2 3 30 30 H 1.08999 * 109.46662 * 60.00030 * 1 2 3 31 31 H 1.08996 * 109.47590 * 239.99983 * 2 1 3 32 32 H 1.09001 * 109.47357 * 120.00216 * 2 1 3 33 33 H 1.08006 * 119.97971 * 359.97438 * 5 4 3 34 34 H 1.09005 * 109.46963 * 275.41455 * 11 10 8 35 35 H 1.08999 * 109.47080 * 35.41196 * 11 10 8 36 36 H 1.09000 * 109.46627 * 155.41546 * 11 10 8 37 37 H 1.08997 * 110.71844 * 35.20408 * 14 12 10 38 38 H 1.09005 * 110.71351 * 272.11258 * 14 12 10 39 39 H 1.08998 * 109.88607 * 97.13315 * 15 14 12 40 40 H 1.09000 * 109.88070 * 218.14579 * 15 14 12 41 41 H 0.97006 * 120.00088 * 180.02562 * 20 19 17 42 42 H 1.09001 * 110.36829 * 142.96158 * 25 16 15 43 43 H 1.08999 * 110.36174 * 265.28828 * 25 16 15 44 44 H 1.07994 * 120.02073 * 180.29871 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3495 1.5248 0.0005 5 6 3.8827 2.8152 0.0011 6 7 5.1865 2.9891 0.0067 7 6 5.9989 1.9334 0.0015 8 6 7.4651 2.1278 0.0021 9 8 8.2051 1.1708 -0.1154 10 7 7.9806 3.3663 0.1329 11 6 7.0958 4.5038 0.3967 12 6 9.4255 3.5748 0.0113 13 1 9.9464 2.6258 -0.1154 14 6 9.7510 4.5476 -1.1529 15 6 11.0999 5.1643 -0.7268 16 7 11.2075 5.0135 0.7317 17 6 12.2685 5.4138 1.4993 18 1 12.2515 5.2572 2.5678 19 6 13.3657 6.0210 0.9042 20 7 13.3866 6.2115 -0.3980 21 14 14.8134 6.5665 1.9513 22 1 14.5452 6.2404 3.3750 23 1 16.0413 5.8610 1.5042 24 1 15.0042 8.0321 1.8070 25 6 9.9843 4.3591 1.2308 26 6 5.4662 0.6452 0.0015 27 7 4.1567 0.4730 0.0009 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 3.2241 3.6713 0.0007 34 1 6.6933 4.8771 -0.5451 35 1 6.2765 4.1851 1.0410 36 1 7.6595 5.2956 0.8902 37 1 8.9844 5.3178 -1.2376 38 1 9.8549 4.0040 -2.0920 39 1 11.9193 4.6371 -1.2155 40 1 11.1261 6.2203 -0.9956 41 1 14.1535 6.6354 -0.8139 42 1 10.2253 3.6740 2.0437 43 1 9.2636 5.1059 1.5639 44 1 6.1238 -0.2114 0.0022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033709420.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:29 Heat of formation + Delta-G solvation = 5.821188 kcal Electronic energy + Delta-G solvation = -26592.381388 eV Core-core repulsion = 22739.436361 eV Total energy + Delta-G solvation = -3852.945027 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.64465 -41.03701 -39.63182 -38.85260 -36.50489 -35.31116 -34.01247 -33.20330 -31.62131 -30.98414 -29.14366 -27.94843 -26.73365 -26.27389 -25.50622 -23.69619 -22.55846 -22.03440 -20.58516 -19.80840 -19.24323 -18.93503 -18.23760 -17.69278 -17.59374 -16.72591 -16.58721 -16.09290 -16.00217 -15.84665 -15.31444 -15.26656 -14.79999 -14.37043 -14.30278 -14.01575 -13.89097 -13.80934 -13.58691 -13.54584 -13.42955 -12.90986 -12.76111 -12.66021 -12.46506 -12.24983 -12.12903 -12.04815 -11.97826 -11.80374 -11.79972 -11.52481 -11.40958 -10.72960 -10.29505 -9.99294 -9.63307 -8.90414 -7.85472 -5.22211 -0.69983 -0.15043 1.46795 1.48248 1.54027 1.58303 1.61595 1.82808 2.49993 2.56446 2.81433 2.86588 3.27819 3.33297 3.55553 3.67279 3.89011 3.92120 3.97910 4.05738 4.16794 4.19879 4.31454 4.41324 4.47148 4.59551 4.63254 4.68316 4.78188 4.86499 4.94723 4.95062 4.95510 5.07632 5.22280 5.24946 5.43930 5.52344 5.61888 5.73055 5.86272 5.89280 6.17560 6.26161 6.45888 6.94556 7.08614 7.74141 8.38187 9.24937 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.043417 B = 0.002253 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.756972 B =12426.697093 C =12525.962760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.055 3.945 3 O -0.293 6.293 4 C 0.299 3.701 5 C 0.053 3.947 6 N -0.372 5.372 7 C -0.029 4.029 8 C 0.573 3.427 9 O -0.570 6.570 10 N -0.580 5.580 11 C 0.086 3.914 12 C 0.137 3.863 13 H 0.087 0.913 14 C -0.132 4.132 15 C 0.189 3.811 16 N -0.624 5.624 17 C -0.242 4.242 18 H 0.084 0.916 19 C -0.066 4.066 20 N -0.951 5.951 21 Si 0.981 3.019 22 H -0.265 1.265 23 H -0.293 1.293 24 H -0.290 1.290 25 C 0.131 3.869 26 C 0.161 3.839 27 N -0.511 5.511 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.219 0.781 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.012 0.988 40 H 0.017 0.983 41 H 0.248 0.752 42 H 0.037 0.963 43 H 0.045 0.955 44 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.805 -9.494 0.144 30.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.197 6.197 4 C 0.114 3.886 5 C -0.115 4.115 6 N -0.090 5.090 7 C -0.166 4.166 8 C 0.361 3.639 9 O -0.450 6.450 10 N -0.309 5.309 11 C -0.055 4.055 12 C 0.032 3.968 13 H 0.105 0.895 14 C -0.172 4.172 15 C 0.064 3.936 16 N -0.351 5.351 17 C -0.371 4.371 18 H 0.102 0.898 19 C -0.259 4.259 20 N -0.599 5.599 21 Si 0.809 3.191 22 H -0.190 1.190 23 H -0.220 1.220 24 H -0.217 1.217 25 C 0.005 3.995 26 C 0.002 3.998 27 N -0.240 5.240 28 H 0.116 0.884 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.235 0.765 34 H 0.090 0.910 35 H 0.117 0.883 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.030 0.970 40 H 0.035 0.965 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -28.436 -9.733 0.085 30.056 hybrid contribution 1.369 0.086 0.224 1.390 sum -27.067 -9.647 0.309 28.736 Atomic orbital electron populations 1.21845 0.90593 1.04394 1.03709 1.22992 0.96677 0.79494 1.02852 1.86270 1.14943 1.32687 1.85804 1.21578 0.85646 0.91969 0.89412 1.23688 0.91415 0.95987 1.00442 1.68904 1.03582 1.31165 1.05343 1.21525 0.93988 0.92002 1.09089 1.17892 0.86536 0.82814 0.76659 1.90779 1.60656 1.40944 1.52608 1.47659 1.07028 1.08101 1.68144 1.22261 0.93175 0.87406 1.02681 1.22130 0.79736 0.98847 0.96082 0.89519 1.23033 0.98047 0.98480 0.97595 1.20871 0.92307 0.96978 0.83481 1.44653 1.16714 1.69835 1.03866 1.19486 0.94609 1.31925 0.91084 0.89849 1.25684 1.01186 1.01755 0.97269 1.70182 1.30852 1.49232 1.09674 0.84971 0.78717 0.77142 0.78244 1.18967 1.22026 1.21685 1.21970 0.88552 0.94331 0.94640 1.23520 0.90119 0.97463 0.88684 1.68294 1.04941 1.33138 1.17673 0.88366 0.91244 0.91262 0.91348 0.91304 0.76465 0.90955 0.88263 0.91389 0.89810 0.90787 0.97004 0.96474 0.94291 0.94476 0.93792 0.79399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.28 71.98 0.74 -0.13 16 2 C 0.05 0.59 6.04 71.98 0.43 1.02 16 3 O -0.29 -4.13 10.12 -87.84 -0.89 -5.02 16 4 C 0.30 4.99 7.50 84.92 0.64 5.62 16 5 C 0.05 0.77 11.18 85.07 0.95 1.73 16 6 N -0.37 -7.37 6.33 -183.92 -1.16 -8.53 16 7 C -0.03 -0.71 6.55 41.78 0.27 -0.43 16 8 C 0.57 17.81 7.64 86.80 0.66 18.47 16 9 O -0.57 -21.25 15.74 -3.87 -0.06 -21.32 16 10 N -0.58 -17.85 2.92 -817.19 -2.38 -20.23 16 11 C 0.09 2.07 8.03 127.77 1.03 3.09 16 12 C 0.14 5.16 3.48 46.56 0.16 5.32 16 13 H 0.09 3.67 7.02 -2.39 -0.02 3.66 16 14 C -0.13 -5.06 6.53 31.78 0.21 -4.85 16 15 C 0.19 9.53 5.37 86.73 0.47 10.00 16 16 N -0.62 -32.75 3.40 -691.01 -2.35 -35.10 16 17 C -0.24 -13.80 10.28 84.03 0.86 -12.93 16 18 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 19 C -0.07 -3.80 5.49 84.86 0.47 -3.34 16 20 N -0.95 -57.80 10.31 21.65 0.22 -57.58 16 21 Si 0.98 46.31 29.55 68.60 2.03 48.34 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 24 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 25 C 0.13 5.53 6.79 87.02 0.59 6.12 16 26 C 0.16 3.47 10.76 84.93 0.91 4.39 16 27 N -0.51 -10.00 9.37 -307.09 -2.88 -12.88 16 28 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.07 0.78 8.11 -2.39 -0.02 0.76 16 32 H 0.07 0.78 8.11 -2.39 -0.02 0.76 16 33 H 0.22 1.57 8.06 -2.91 -0.02 1.55 16 34 H 0.07 1.57 8.00 -2.38 -0.02 1.55 16 35 H 0.10 2.09 5.78 -2.39 -0.01 2.08 16 36 H 0.07 1.71 5.96 -2.39 -0.01 1.70 16 37 H 0.08 2.84 7.33 -2.39 -0.02 2.82 16 38 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 39 H 0.01 0.67 7.38 -2.39 -0.02 0.65 16 40 H 0.02 0.95 7.51 -2.39 -0.02 0.93 16 41 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 42 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.04 1.72 5.98 -2.39 -0.01 1.71 16 44 H 0.19 3.85 7.65 -2.91 -0.02 3.82 16 Total: -1.00 -71.72 358.72 1.94 -69.78 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: 1.01 Total: 8.46 kcal Atomic # 6 Polarization: 25.68 SS G_CDS: 8.40 Total: 34.07 kcal Atomic # 7 Polarization: -125.77 SS G_CDS: -8.55 Total: -134.32 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.95 Total: -26.33 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -71.72 1.94 -69.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033709420.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.605 kcal (2) G-P(sol) polarization free energy of solvation -71.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds