Wall clock time and date at job start Tue Mar 31 2020 13:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46494 * 109.47444 * 2 1 4 4 C 1.34778 * 119.99979 * 275.97480 * 3 2 1 5 5 O 1.21476 * 120.00495 * 186.09537 * 4 3 2 6 6 C 1.48457 * 119.99757 * 6.09798 * 4 3 2 7 7 C 1.39183 * 120.51775 * 175.39938 * 6 4 3 8 8 C 1.39594 * 118.20673 * 179.71848 * 7 6 4 9 9 O 1.35515 * 120.49353 * 180.26119 * 8 7 6 10 10 C 1.42901 * 117.00129 * 180.29843 * 9 8 7 11 11 N 1.32665 * 119.01794 * 0.54998 * 8 7 6 12 12 C 1.31873 * 120.93739 * 359.72891 * 11 8 7 13 13 N 1.31552 * 121.98466 * 359.97438 * 12 11 8 14 14 C 1.46502 * 120.00517 * 95.97166 * 3 2 1 15 15 H 1.08998 * 110.63588 * 10.51474 * 14 3 2 16 16 C 1.55149 * 110.72154 * 247.17730 * 14 3 2 17 17 C 1.54911 * 101.58062 * 277.13273 * 16 14 3 18 18 N 1.47426 * 104.83362 * 322.99456 * 17 16 14 19 19 C 1.36939 * 125.64825 * 204.16209 * 18 17 16 20 20 H 1.08003 * 119.99932 * 179.97438 * 19 18 17 21 21 C 1.38808 * 119.99976 * 359.95465 * 19 18 17 22 22 N 1.31617 * 120.00314 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99990 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47234 * 90.00354 * 23 21 19 25 25 H 1.48497 * 109.47216 * 210.00335 * 23 21 19 26 26 H 1.48502 * 109.46939 * 329.99744 * 23 21 19 27 27 C 1.47025 * 108.70079 * 24.12562 * 18 17 16 28 28 H 1.08995 * 109.47026 * 300.00132 * 1 2 3 29 29 H 1.09005 * 109.46709 * 60.00523 * 1 2 3 30 30 H 1.09007 * 109.47344 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47534 * 239.99420 * 2 1 3 32 32 H 1.09001 * 109.47159 * 120.00047 * 2 1 3 33 33 H 1.08011 * 120.89553 * 359.97438 * 7 6 4 34 34 H 1.09004 * 109.46834 * 299.99624 * 10 9 8 35 35 H 1.09002 * 109.47372 * 59.99575 * 10 9 8 36 36 H 1.09001 * 109.47339 * 179.97438 * 10 9 8 37 37 H 1.07995 * 119.00452 * 179.97438 * 12 11 8 38 38 H 1.08993 * 111.00714 * 35.20642 * 16 14 3 39 39 H 1.09003 * 111.00472 * 159.06319 * 16 14 3 40 40 H 1.08996 * 110.37214 * 204.15454 * 17 16 14 41 41 H 1.09003 * 110.36844 * 81.82998 * 17 16 14 42 42 H 0.97002 * 120.00694 * 179.97438 * 22 21 19 43 43 H 1.09005 * 109.87804 * 239.52443 * 27 18 17 44 44 H 1.09002 * 109.88099 * 118.35988 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1285 2.0570 -1.1609 5 8 2.6362 3.1604 -1.1756 6 6 1.6292 1.4528 -2.4217 7 6 1.6501 2.1778 -3.6096 8 6 1.1744 1.5606 -4.7678 9 8 1.1783 2.2219 -5.9506 10 6 0.6684 1.5215 -7.0871 11 7 0.7131 0.3190 -4.6923 12 6 0.7049 -0.3326 -3.5458 13 7 1.1492 0.2099 -2.4327 14 6 2.3870 2.0278 1.2618 15 1 2.4179 1.2995 2.0721 16 6 1.4059 3.1830 1.5938 17 6 1.9938 4.3422 0.7510 18 7 3.4551 4.1644 0.8319 19 6 4.3897 5.1504 0.6606 20 1 5.4413 4.9174 0.7406 21 6 3.9857 6.4492 0.3838 22 7 2.7042 6.7332 0.2865 23 14 5.2607 7.7941 0.1494 24 1 5.6408 7.8715 -1.2840 25 1 4.6921 9.0960 0.5817 26 1 6.4628 7.4840 0.9644 27 6 3.7425 2.7532 1.1279 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.0280 3.1893 -3.6354 34 1 1.2587 0.6204 -7.2534 35 1 -0.3712 1.2470 -6.9084 36 1 0.7284 2.1630 -7.9663 37 1 0.3219 -1.3420 -3.5200 38 1 0.3933 2.9403 1.2717 39 1 1.4293 3.4221 2.6570 40 1 1.7047 5.3039 1.1747 41 1 1.6592 4.2666 -0.2836 42 1 2.4218 7.6409 0.0934 43 1 4.2981 2.6762 2.0625 44 1 4.3193 2.3138 0.3140 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033829943.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:40 Heat of formation + Delta-G solvation = 71.704092 kcal Electronic energy + Delta-G solvation = -28492.504793 eV Core-core repulsion = 24642.416663 eV Total energy + Delta-G solvation = -3850.088130 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.45505 -39.88026 -38.52882 -36.32905 -35.42804 -33.27846 -32.02376 -31.83212 -29.93423 -28.89834 -27.85815 -27.08550 -25.05837 -24.30298 -24.15029 -22.93172 -21.26309 -19.97311 -19.32414 -18.40214 -17.49073 -16.62130 -16.41068 -16.23418 -15.91057 -15.38853 -15.29930 -14.87627 -14.55029 -14.40062 -14.18417 -13.70152 -13.62675 -13.41370 -12.87688 -12.56351 -12.25774 -12.11237 -11.85282 -11.80176 -11.48425 -11.42862 -11.03276 -10.88500 -10.74164 -10.70820 -10.64442 -10.37896 -9.97135 -9.91358 -9.65732 -9.51518 -9.30598 -9.20914 -8.96677 -8.47582 -7.79241 -6.47450 -5.41049 -2.76628 0.57866 0.93971 2.64053 3.11655 3.31914 3.52478 3.56871 3.58378 3.88941 3.90643 3.98340 4.62858 4.68112 4.93719 4.99632 5.04097 5.20221 5.28880 5.33591 5.49163 5.51380 5.57517 5.68553 5.72083 5.75783 5.84676 5.89570 5.96136 6.12567 6.24604 6.41398 6.51215 6.60670 6.66836 6.68975 6.80166 6.85816 6.94975 7.27500 7.76663 7.81409 7.91440 7.96446 8.10693 8.59585 8.77518 9.46823 10.08399 10.75430 11.62257 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012803 B = 0.004741 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.482390 B = 5904.466853 C = 7613.398293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.108 3.892 3 N -0.590 5.590 4 C 0.521 3.479 5 O -0.423 6.423 6 C 0.171 3.829 7 C -0.186 4.186 8 C 0.361 3.639 9 O -0.298 6.298 10 C 0.038 3.962 11 N -0.573 5.573 12 C 0.320 3.680 13 N -0.510 5.510 14 C 0.135 3.865 15 H 0.086 0.914 16 C -0.159 4.159 17 C 0.154 3.846 18 N -0.577 5.577 19 C -0.203 4.203 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.919 5.919 23 Si 0.908 3.092 24 H -0.292 1.292 25 H -0.293 1.293 26 H -0.284 1.284 27 C 0.137 3.863 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.106 0.894 32 H 0.062 0.938 33 H 0.166 0.834 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.100 0.900 37 H 0.201 0.799 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.094 0.906 41 H 0.044 0.956 42 H 0.247 0.753 43 H 0.023 0.977 44 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.363 -17.526 -7.552 20.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.015 4.015 3 N -0.326 5.326 4 C 0.305 3.695 5 O -0.290 6.290 6 C 0.027 3.973 7 C -0.210 4.210 8 C 0.173 3.827 9 O -0.201 6.201 10 C -0.057 4.057 11 N -0.304 5.304 12 C 0.032 3.968 13 N -0.232 5.232 14 C 0.032 3.968 15 H 0.104 0.896 16 C -0.199 4.199 17 C 0.029 3.971 18 N -0.302 5.302 19 C -0.332 4.332 20 H 0.089 0.911 21 C -0.208 4.208 22 N -0.569 5.569 23 Si 0.739 3.261 24 H -0.220 1.220 25 H -0.219 1.219 26 H -0.210 1.210 27 C 0.009 3.991 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.124 0.876 32 H 0.080 0.920 33 H 0.184 0.816 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.118 0.882 37 H 0.217 0.783 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.112 0.888 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.040 0.960 44 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -7.264 -17.221 -7.666 20.202 hybrid contribution 0.660 1.088 -0.530 1.379 sum -6.604 -16.133 -8.196 19.263 Atomic orbital electron populations 1.22059 0.96544 1.01051 1.01340 1.21892 0.94381 0.82101 1.03084 1.47639 1.65424 1.13934 1.05562 1.17781 0.83443 0.85812 0.82506 1.91228 1.37641 1.16300 1.83836 1.21874 0.91481 0.89386 0.94569 1.21983 1.04494 1.04449 0.90085 1.20017 0.88561 0.87549 0.86532 1.86294 1.78037 1.40915 1.14858 1.22959 0.99531 0.97829 0.85364 1.67982 1.22275 1.08528 1.31653 1.24753 0.90864 0.99365 0.81835 1.68967 1.13438 1.11468 1.29292 1.22154 0.96566 0.94377 0.83707 0.89563 1.23570 0.97369 0.97829 1.01133 1.22242 0.82936 0.95613 0.96288 1.44214 1.02444 1.01617 1.81926 1.18998 0.87720 0.87123 1.39335 0.91083 1.24667 0.96026 0.97191 1.02947 1.69830 1.12494 1.18233 1.56346 0.86159 0.80372 0.81827 0.77699 1.21983 1.21943 1.20974 1.21436 0.92980 0.87552 0.97086 0.93565 0.92640 0.92523 0.87598 0.91972 0.81647 0.91996 0.91986 0.88213 0.78297 0.92547 0.91643 0.88810 0.93938 0.94233 0.95983 0.96111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.52 37.16 0.35 -1.36 16 2 C 0.11 1.34 5.72 -4.05 -0.02 1.31 16 3 N -0.59 -9.74 2.52 -164.92 -0.41 -10.16 16 4 C 0.52 9.89 6.76 -12.05 -0.08 9.81 16 5 O -0.42 -10.10 9.78 5.39 0.05 -10.05 16 6 C 0.17 2.71 6.38 -82.69 -0.53 2.19 16 7 C -0.19 -2.96 9.68 -38.72 -0.37 -3.33 16 8 C 0.36 5.03 7.53 -16.69 -0.13 4.90 16 9 O -0.30 -3.85 10.49 -18.24 -0.19 -4.05 16 10 C 0.04 0.33 10.41 101.05 1.05 1.38 16 11 N -0.57 -6.96 9.36 -14.65 -0.14 -7.10 16 12 C 0.32 3.40 12.27 -92.29 -1.13 2.27 16 13 N -0.51 -6.46 4.37 -11.20 -0.05 -6.51 16 14 C 0.14 2.42 3.72 -66.10 -0.25 2.18 16 15 H 0.09 1.27 7.76 -51.93 -0.40 0.87 16 16 C -0.16 -3.16 6.66 -24.59 -0.16 -3.33 16 17 C 0.15 3.94 4.90 -2.53 -0.01 3.93 16 18 N -0.58 -15.51 2.30 -170.07 -0.39 -15.90 16 19 C -0.20 -5.96 10.27 -15.06 -0.15 -6.12 16 20 H 0.07 2.04 7.83 -52.48 -0.41 1.63 16 21 C -0.01 -0.40 5.49 -17.43 -0.10 -0.49 16 22 N -0.92 -28.19 10.09 55.49 0.56 -27.63 16 23 Si 0.91 23.27 29.55 -169.99 -5.02 18.25 16 24 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 25 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 26 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 27 C 0.14 3.02 6.01 -3.07 -0.02 3.00 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.72 6.35 -51.93 -0.33 0.39 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.11 1.28 5.51 -51.93 -0.29 0.99 16 32 H 0.06 0.66 7.78 -51.93 -0.40 0.26 16 33 H 0.17 2.87 7.74 -52.48 -0.41 2.47 16 34 H 0.06 0.51 8.12 -51.93 -0.42 0.08 16 35 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.20 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.09 2.73 5.87 -51.93 -0.30 2.43 16 41 H 0.04 1.21 5.18 -53.34 -0.28 0.93 16 42 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.02 0.49 7.40 -51.93 -0.38 0.11 16 LS Contribution 348.00 15.07 5.24 5.24 Total: -1.00 -34.39 348.00 -8.04 -42.43 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -6.14 Total: -0.87 kcal Atomic # 6 Polarization: 17.89 SS G_CDS: -1.55 Total: 16.34 kcal Atomic # 7 Polarization: -66.86 SS G_CDS: -0.43 Total: -67.30 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.14 Total: -14.10 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.02 Total: 18.25 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.39 -8.04 -42.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033829943.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.135 kcal (2) G-P(sol) polarization free energy of solvation -34.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds