Wall clock time and date at job start Tue Mar 31 2020 13:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46494 * 109.47444 * 2 1 4 4 C 1.34778 * 119.99979 * 275.97480 * 3 2 1 5 5 O 1.21476 * 120.00495 * 186.09537 * 4 3 2 6 6 C 1.48457 * 119.99757 * 6.09798 * 4 3 2 7 7 C 1.39183 * 120.51775 * 175.39938 * 6 4 3 8 8 C 1.39594 * 118.20673 * 179.71848 * 7 6 4 9 9 O 1.35515 * 120.49353 * 180.26119 * 8 7 6 10 10 C 1.42901 * 117.00129 * 180.29843 * 9 8 7 11 11 N 1.32665 * 119.01794 * 0.54998 * 8 7 6 12 12 C 1.31873 * 120.93739 * 359.72891 * 11 8 7 13 13 N 1.31552 * 121.98466 * 359.97438 * 12 11 8 14 14 C 1.46502 * 120.00517 * 95.97166 * 3 2 1 15 15 H 1.08998 * 110.63588 * 10.51474 * 14 3 2 16 16 C 1.55149 * 110.72154 * 247.17730 * 14 3 2 17 17 C 1.54911 * 101.58062 * 277.13273 * 16 14 3 18 18 N 1.47426 * 104.83362 * 322.99456 * 17 16 14 19 19 C 1.36939 * 125.64825 * 204.16209 * 18 17 16 20 20 H 1.08003 * 119.99932 * 179.97438 * 19 18 17 21 21 C 1.38808 * 119.99976 * 359.95465 * 19 18 17 22 22 N 1.31617 * 120.00314 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99990 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47234 * 90.00354 * 23 21 19 25 25 H 1.48497 * 109.47216 * 210.00335 * 23 21 19 26 26 H 1.48502 * 109.46939 * 329.99744 * 23 21 19 27 27 C 1.47025 * 108.70079 * 24.12562 * 18 17 16 28 28 H 1.08995 * 109.47026 * 300.00132 * 1 2 3 29 29 H 1.09005 * 109.46709 * 60.00523 * 1 2 3 30 30 H 1.09007 * 109.47344 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47534 * 239.99420 * 2 1 3 32 32 H 1.09001 * 109.47159 * 120.00047 * 2 1 3 33 33 H 1.08011 * 120.89553 * 359.97438 * 7 6 4 34 34 H 1.09004 * 109.46834 * 299.99624 * 10 9 8 35 35 H 1.09002 * 109.47372 * 59.99575 * 10 9 8 36 36 H 1.09001 * 109.47339 * 179.97438 * 10 9 8 37 37 H 1.07995 * 119.00452 * 179.97438 * 12 11 8 38 38 H 1.08993 * 111.00714 * 35.20642 * 16 14 3 39 39 H 1.09003 * 111.00472 * 159.06319 * 16 14 3 40 40 H 1.08996 * 110.37214 * 204.15454 * 17 16 14 41 41 H 1.09003 * 110.36844 * 81.82998 * 17 16 14 42 42 H 0.97002 * 120.00694 * 179.97438 * 22 21 19 43 43 H 1.09005 * 109.87804 * 239.52443 * 27 18 17 44 44 H 1.09002 * 109.88099 * 118.35988 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1285 2.0570 -1.1609 5 8 2.6362 3.1604 -1.1756 6 6 1.6292 1.4528 -2.4217 7 6 1.6501 2.1778 -3.6096 8 6 1.1744 1.5606 -4.7678 9 8 1.1783 2.2219 -5.9506 10 6 0.6684 1.5215 -7.0871 11 7 0.7131 0.3190 -4.6923 12 6 0.7049 -0.3326 -3.5458 13 7 1.1492 0.2099 -2.4327 14 6 2.3870 2.0278 1.2618 15 1 2.4179 1.2995 2.0721 16 6 1.4059 3.1830 1.5938 17 6 1.9938 4.3422 0.7510 18 7 3.4551 4.1644 0.8319 19 6 4.3897 5.1504 0.6606 20 1 5.4413 4.9174 0.7406 21 6 3.9857 6.4492 0.3838 22 7 2.7042 6.7332 0.2865 23 14 5.2607 7.7941 0.1494 24 1 5.6408 7.8715 -1.2840 25 1 4.6921 9.0960 0.5817 26 1 6.4628 7.4840 0.9644 27 6 3.7425 2.7532 1.1279 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.0280 3.1893 -3.6354 34 1 1.2587 0.6204 -7.2534 35 1 -0.3712 1.2470 -6.9084 36 1 0.7284 2.1630 -7.9663 37 1 0.3219 -1.3420 -3.5200 38 1 0.3933 2.9403 1.2717 39 1 1.4293 3.4221 2.6570 40 1 1.7047 5.3039 1.1747 41 1 1.6592 4.2666 -0.2836 42 1 2.4218 7.6409 0.0934 43 1 4.2981 2.6762 2.0625 44 1 4.3193 2.3138 0.3140 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033829943.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:40 Heat of formation + Delta-G solvation = 48.522814 kcal Electronic energy + Delta-G solvation = -28493.510009 eV Core-core repulsion = 24642.416663 eV Total energy + Delta-G solvation = -3851.093346 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.56767 -41.27030 -39.57995 -38.00686 -36.83349 -34.65333 -33.76007 -32.92003 -31.37052 -30.61503 -29.00603 -28.47515 -26.65057 -25.85298 -25.31054 -23.98421 -22.59765 -21.96552 -20.64909 -19.43578 -18.93528 -18.51975 -17.55791 -17.38527 -17.13630 -16.79888 -16.59059 -16.43002 -16.05761 -15.65535 -15.53010 -15.25943 -14.92164 -14.44865 -14.31199 -13.99176 -13.77854 -13.35236 -13.28944 -12.99155 -12.88757 -12.80968 -12.75052 -12.54988 -12.19433 -12.05133 -11.98862 -11.84263 -11.75003 -11.64717 -11.32396 -11.22056 -10.98494 -10.56334 -10.29685 -10.10025 -9.36211 -8.59047 -7.63063 -5.01512 -0.59359 -0.10606 1.43186 1.46840 1.54469 1.61155 1.83811 2.08232 2.55734 2.74770 2.84215 3.02363 3.43352 3.51947 3.79570 3.86589 3.97977 4.04987 4.22204 4.28509 4.37978 4.38153 4.42021 4.49449 4.67420 4.70137 4.74786 4.80620 4.89365 4.95793 5.01809 5.09109 5.15096 5.25451 5.35167 5.51901 5.54538 5.69171 5.86503 5.91530 5.97127 6.05250 6.45452 6.52235 6.84000 7.24160 7.34530 7.96951 8.61633 9.38025 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012803 B = 0.004741 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.482390 B = 5904.466853 C = 7613.398293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.103 3.897 3 N -0.583 5.583 4 C 0.519 3.481 5 O -0.488 6.488 6 C 0.167 3.833 7 C -0.213 4.213 8 C 0.366 3.634 9 O -0.315 6.315 10 C 0.032 3.968 11 N -0.564 5.564 12 C 0.331 3.669 13 N -0.499 5.499 14 C 0.148 3.852 15 H 0.137 0.863 16 C -0.144 4.144 17 C 0.158 3.842 18 N -0.597 5.597 19 C -0.218 4.218 20 H 0.070 0.930 21 C -0.072 4.072 22 N -0.947 5.947 23 Si 0.972 3.028 24 H -0.296 1.296 25 H -0.292 1.292 26 H -0.268 1.268 27 C 0.133 3.867 28 H 0.040 0.960 29 H 0.036 0.964 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.091 0.909 33 H 0.134 0.866 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.124 0.876 37 H 0.253 0.747 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.051 0.949 41 H 0.014 0.986 42 H 0.239 0.761 43 H 0.034 0.966 44 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.230 -21.414 -7.509 24.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.018 4.018 3 N -0.317 5.317 4 C 0.303 3.697 5 O -0.360 6.360 6 C 0.023 3.977 7 C -0.237 4.237 8 C 0.178 3.822 9 O -0.219 6.219 10 C -0.062 4.062 11 N -0.295 5.295 12 C 0.045 3.955 13 N -0.220 5.220 14 C 0.044 3.956 15 H 0.155 0.845 16 C -0.183 4.183 17 C 0.034 3.966 18 N -0.321 5.321 19 C -0.348 4.348 20 H 0.088 0.912 21 C -0.263 4.263 22 N -0.599 5.599 23 Si 0.801 3.199 24 H -0.224 1.224 25 H -0.219 1.219 26 H -0.193 1.193 27 C 0.007 3.993 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.107 0.893 31 H 0.130 0.870 32 H 0.110 0.890 33 H 0.152 0.848 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.142 0.858 37 H 0.269 0.731 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.069 0.931 41 H 0.031 0.969 42 H 0.049 0.951 43 H 0.052 0.948 44 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -8.148 -21.198 -7.620 23.954 hybrid contribution 0.880 2.109 -0.694 2.389 sum -7.269 -19.088 -8.315 22.053 Atomic orbital electron populations 1.21988 0.95380 1.02729 1.00140 1.22226 0.95212 0.79462 1.04872 1.47842 1.64168 1.15333 1.04336 1.18306 0.82145 0.85195 0.84011 1.91214 1.40687 1.19053 1.85006 1.21411 0.92507 0.90731 0.93052 1.21817 1.06570 1.03688 0.91652 1.19950 0.88010 0.87964 0.86317 1.86282 1.78076 1.42028 1.15496 1.23284 0.99830 0.98581 0.84511 1.68145 1.21768 1.07369 1.32231 1.25836 0.88585 1.00593 0.80531 1.69006 1.13309 1.09516 1.30214 1.22128 0.93096 0.94684 0.85651 0.84521 1.23360 0.98142 0.96215 1.00585 1.21908 0.83075 0.96022 0.95603 1.44417 1.02546 1.03209 1.81962 1.19341 0.88378 0.88275 1.38831 0.91246 1.25473 0.97927 0.99390 1.03544 1.70132 1.14191 1.17910 1.57643 0.85157 0.78561 0.78893 0.77263 1.22380 1.21893 1.19323 1.21597 0.95584 0.85619 0.96523 0.94117 0.94530 0.89312 0.87017 0.89040 0.84773 0.91212 0.91286 0.85801 0.73133 0.91082 0.90458 0.93141 0.96913 0.95132 0.94810 0.97881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.52 71.98 0.69 -2.00 16 2 C 0.10 2.14 5.72 86.38 0.49 2.63 16 3 N -0.58 -18.34 2.52 -793.99 -2.00 -20.34 16 4 C 0.52 20.17 6.76 86.97 0.59 20.76 16 5 O -0.49 -24.91 9.78 -3.64 -0.04 -24.95 16 6 C 0.17 5.34 6.38 41.88 0.27 5.61 16 7 C -0.21 -7.12 9.68 22.82 0.22 -6.90 16 8 C 0.37 10.09 7.53 84.89 0.64 10.73 16 9 O -0.32 -8.13 10.49 -88.17 -0.93 -9.05 16 10 C 0.03 0.50 10.41 113.37 1.18 1.68 16 11 N -0.56 -12.29 9.36 -313.01 -2.93 -15.22 16 12 C 0.33 5.82 12.27 180.93 2.22 8.04 16 13 N -0.50 -11.39 4.37 -189.34 -0.83 -12.22 16 14 C 0.15 5.02 3.72 46.17 0.17 5.19 16 15 H 0.14 3.36 7.76 -2.39 -0.02 3.34 16 16 C -0.14 -5.62 6.66 31.98 0.21 -5.41 16 17 C 0.16 8.56 4.90 86.86 0.43 8.99 16 18 N -0.60 -33.39 2.30 -691.97 -1.59 -34.99 16 19 C -0.22 -13.41 10.27 84.03 0.86 -12.55 16 20 H 0.07 4.14 7.83 -2.91 -0.02 4.11 16 21 C -0.07 -4.43 5.49 84.86 0.47 -3.97 16 22 N -0.95 -61.60 10.09 21.65 0.22 -61.38 16 23 Si 0.97 49.84 29.55 68.60 2.03 51.87 16 24 H -0.30 -15.22 7.11 99.48 0.71 -14.52 16 25 H -0.29 -14.83 7.11 99.48 0.71 -14.12 16 26 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 27 C 0.13 5.91 6.01 86.73 0.52 6.43 16 28 H 0.04 0.81 8.14 -2.39 -0.02 0.80 16 29 H 0.04 0.83 6.35 -2.38 -0.02 0.81 16 30 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.11 2.25 5.51 -2.39 -0.01 2.24 16 32 H 0.09 1.44 7.78 -2.39 -0.02 1.42 16 33 H 0.13 5.27 7.74 -2.91 -0.02 5.25 16 34 H 0.07 0.99 8.12 -2.38 -0.02 0.97 16 35 H 0.07 0.99 8.12 -2.39 -0.02 0.97 16 36 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.25 1.68 8.06 -2.91 -0.02 1.65 16 38 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 40 H 0.05 3.14 5.87 -2.39 -0.01 3.12 16 41 H 0.01 0.81 5.18 -24.75 -0.13 0.69 16 42 H 0.24 15.13 8.31 -92.71 -0.77 14.36 16 43 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 44 H 0.00 0.16 7.40 -2.39 -0.02 0.14 16 Total: -1.00 -82.68 348.00 3.79 -78.88 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: 0.90 Total: 8.17 kcal Atomic # 6 Polarization: 30.27 SS G_CDS: 8.96 Total: 39.23 kcal Atomic # 7 Polarization: -137.02 SS G_CDS: -7.13 Total: -144.15 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -0.96 Total: -34.00 kcal Atomic # 14 Polarization: 49.84 SS G_CDS: 2.03 Total: 51.87 kcal Total: -82.68 3.79 -78.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033829943.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.407 kcal (2) G-P(sol) polarization free energy of solvation -82.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds