Wall clock time and date at job start Tue Mar 31 2020 13:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46781 * 2 1 4 4 C 1.34781 * 120.00046 * 277.04137 * 3 2 1 5 5 O 1.21481 * 119.99899 * 185.26273 * 4 3 2 6 6 C 1.48451 * 119.99717 * 5.26257 * 4 3 2 7 7 C 1.39183 * 120.51604 * 175.28148 * 6 4 3 8 8 C 1.39597 * 118.20856 * 180.02562 * 7 6 4 9 9 O 1.35507 * 120.49190 * 179.97438 * 8 7 6 10 10 C 1.42898 * 116.99916 * 179.97438 * 9 8 7 11 11 N 1.32666 * 119.01526 * 359.97438 * 8 7 6 12 12 C 1.31861 * 120.94196 * 359.97438 * 11 8 7 13 13 N 1.31554 * 121.98414 * 359.71758 * 12 11 8 14 14 C 1.46496 * 120.00019 * 97.04794 * 3 2 1 15 15 H 1.08997 * 110.89083 * 172.39050 * 14 3 2 16 16 C 1.55154 * 111.00178 * 296.27183 * 14 3 2 17 17 C 1.54322 * 102.94448 * 82.57275 * 16 14 3 18 18 N 1.47019 * 107.27221 * 22.19379 * 17 16 14 19 19 C 1.36940 * 125.65381 * 181.02319 * 18 17 16 20 20 H 1.07993 * 120.00226 * 180.02562 * 19 18 17 21 21 C 1.38814 * 119.99403 * 359.75204 * 19 18 17 22 22 N 1.31619 * 119.99928 * 0.27052 * 21 19 18 23 23 Si 1.86797 * 119.99575 * 180.27472 * 21 19 18 24 24 H 1.48499 * 109.47274 * 59.99613 * 23 21 19 25 25 H 1.48508 * 109.47019 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47072 * 299.99394 * 23 21 19 27 27 C 1.47426 * 108.70000 * 1.28650 * 18 17 16 28 28 H 1.09000 * 109.47493 * 65.36272 * 1 2 3 29 29 H 1.09000 * 109.47094 * 185.36928 * 1 2 3 30 30 H 1.09009 * 109.47110 * 305.36340 * 1 2 3 31 31 H 1.09000 * 109.46489 * 240.00416 * 2 1 3 32 32 H 1.08995 * 109.47336 * 119.99891 * 2 1 3 33 33 H 1.08000 * 120.89701 * 359.97245 * 7 6 4 34 34 H 1.09002 * 109.47614 * 299.99860 * 10 9 8 35 35 H 1.09001 * 109.47156 * 60.00264 * 10 9 8 36 36 H 1.09002 * 109.47232 * 180.02562 * 10 9 8 37 37 H 1.07996 * 119.00886 * 180.02562 * 12 11 8 38 38 H 1.09005 * 110.72351 * 324.21087 * 16 14 3 39 39 H 1.09000 * 110.72026 * 200.93858 * 16 14 3 40 40 H 1.09001 * 109.88210 * 262.77651 * 17 16 14 41 41 H 1.09005 * 109.88651 * 141.60752 * 17 16 14 42 42 H 0.96999 * 119.99538 * 180.02562 * 22 21 19 43 43 H 1.08995 * 110.36712 * 94.48680 * 27 18 17 44 44 H 1.09010 * 110.36880 * 216.80836 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1080 2.0643 -1.1584 5 8 2.6016 3.1743 -1.1724 6 6 1.6035 1.4603 -2.4172 7 6 1.6008 2.1924 -3.6009 8 6 1.1152 1.5773 -4.7561 9 8 1.0909 2.2474 -5.9336 10 6 0.5792 1.5461 -7.0687 11 7 0.6779 0.3268 -4.6840 12 6 0.6980 -0.3337 -3.5430 13 7 1.1527 0.2065 -2.4330 14 6 2.4092 2.0200 1.2591 15 1 2.8720 2.9896 1.0758 16 6 1.1942 2.1554 2.2146 17 6 1.1186 0.7637 2.8770 18 7 2.4495 0.1506 2.7579 19 6 2.7966 -1.0967 3.2040 20 1 3.8055 -1.4573 3.0685 21 6 1.8530 -1.8953 3.8354 22 7 0.6234 -1.4557 4.0006 23 14 2.3284 -3.5937 4.4508 24 1 3.4205 -3.4706 5.4495 25 1 1.1499 -4.2387 5.0836 26 1 2.7928 -4.4218 3.3090 27 6 3.3503 1.1037 2.0843 28 1 -0.3634 0.4284 -0.9341 29 1 -0.3633 -1.0232 0.0962 30 1 -0.3634 0.5948 0.8381 31 1 1.8932 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.9638 3.2093 -3.6249 34 1 1.1840 0.6576 -7.2499 35 1 -0.4526 1.2507 -6.8785 36 1 0.6163 2.1950 -7.9437 37 1 0.3348 -1.3505 -3.5200 38 1 0.2837 2.3654 1.6533 39 1 1.3751 2.9287 2.9612 40 1 0.3797 0.1484 2.3636 41 1 0.8512 0.8677 3.9286 42 1 -0.0358 -2.0137 4.4422 43 1 3.9032 1.6878 2.8199 44 1 4.0379 0.5743 1.4245 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033829944.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:44 Heat of formation + Delta-G solvation = 44.811100 kcal Electronic energy + Delta-G solvation = -28176.437545 eV Core-core repulsion = 24325.183247 eV Total energy + Delta-G solvation = -3851.254298 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.57426 -39.87017 -38.61485 -37.52171 -34.76778 -33.41318 -32.13439 -31.95663 -30.13072 -29.25142 -28.02107 -27.11256 -25.15466 -24.43101 -24.26831 -22.64599 -21.30787 -20.06828 -19.33137 -18.53279 -17.91213 -16.96823 -16.51792 -16.43379 -15.86991 -15.63187 -15.20066 -15.05092 -14.64284 -14.50728 -14.20509 -14.00513 -13.78523 -13.33286 -12.73024 -12.61391 -12.33685 -12.06737 -11.95436 -11.88766 -11.72786 -11.06901 -10.99253 -10.93456 -10.86087 -10.65643 -10.60643 -10.30710 -10.17380 -10.15379 -10.02422 -9.88554 -9.65086 -9.34459 -8.99280 -8.61350 -8.17290 -6.80340 -5.74291 -3.08515 0.40400 0.83956 2.49383 2.83652 3.20865 3.38969 3.44322 3.44605 3.73132 3.81053 3.91783 4.47286 4.51572 4.79253 4.88520 4.94974 5.06286 5.23988 5.36702 5.40015 5.45762 5.50016 5.68824 5.80000 5.88295 5.96475 6.14233 6.18056 6.26235 6.37913 6.46226 6.50341 6.55664 6.63213 6.69841 6.80686 6.86346 7.05246 7.23042 7.54919 7.62991 7.75912 7.82733 7.84385 8.22252 8.32073 9.18535 9.77970 10.43162 11.36269 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020151 B = 0.003630 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.198681 B = 7712.542964 C = 8532.037354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.077 3.923 3 N -0.554 5.554 4 C 0.560 3.440 5 O -0.542 6.542 6 C 0.166 3.834 7 C -0.188 4.188 8 C 0.359 3.641 9 O -0.300 6.300 10 C 0.038 3.962 11 N -0.568 5.568 12 C 0.326 3.674 13 N -0.493 5.493 14 C 0.119 3.881 15 H 0.100 0.900 16 C -0.156 4.156 17 C 0.167 3.833 18 N -0.600 5.600 19 C -0.233 4.233 20 H 0.077 0.923 21 C -0.003 4.003 22 N -0.917 5.917 23 Si 0.910 3.090 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.285 1.285 27 C 0.126 3.874 28 H 0.038 0.962 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.129 0.871 33 H 0.163 0.837 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.205 0.795 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.040 0.960 42 H 0.253 0.747 43 H 0.033 0.967 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.655 4.676 -17.384 18.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.044 4.044 3 N -0.283 5.283 4 C 0.345 3.655 5 O -0.420 6.420 6 C 0.022 3.978 7 C -0.212 4.212 8 C 0.171 3.829 9 O -0.204 6.204 10 C -0.057 4.057 11 N -0.298 5.298 12 C 0.038 3.962 13 N -0.214 5.214 14 C 0.015 3.985 15 H 0.118 0.882 16 C -0.195 4.195 17 C 0.043 3.957 18 N -0.327 5.327 19 C -0.361 4.361 20 H 0.095 0.905 21 C -0.199 4.199 22 N -0.564 5.564 23 Si 0.740 3.260 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.211 1.211 27 C -0.001 4.001 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.114 0.886 32 H 0.146 0.854 33 H 0.181 0.819 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.118 0.882 37 H 0.222 0.778 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.051 0.949 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.732 4.461 -17.303 17.953 hybrid contribution 0.206 -0.385 0.151 0.462 sum -1.526 4.076 -17.152 17.696 Atomic orbital electron populations 1.22093 0.96405 1.01882 1.00044 1.22578 0.94736 0.80388 1.06714 1.47843 1.60297 1.15037 1.05122 1.17780 0.79974 0.84953 0.82807 1.90749 1.45792 1.19675 1.85782 1.21558 0.92566 0.89785 0.93894 1.21866 1.04906 1.04177 0.90229 1.20001 0.88748 0.87646 0.86542 1.86252 1.78455 1.40303 1.15343 1.22975 0.99653 0.97892 0.85224 1.68025 1.22081 1.08044 1.31700 1.24927 0.90007 0.99711 0.81535 1.69187 1.12277 1.10902 1.28988 1.22398 0.96803 0.96775 0.82512 0.88247 1.23292 0.97124 1.01079 0.98043 1.21414 0.87997 0.87710 0.98563 1.44590 1.06355 1.13692 1.68084 1.18969 0.95945 0.89393 1.31773 0.90511 1.24763 0.95833 0.98578 1.00763 1.69952 1.02378 1.36553 1.47534 0.86242 0.77059 0.84023 0.78654 1.21313 1.21677 1.21121 1.21918 0.92742 0.91713 0.93692 0.94351 0.92186 0.92415 0.88633 0.85382 0.81936 0.91886 0.91869 0.88181 0.77836 0.91871 0.91412 0.91800 0.94155 0.93687 0.94922 0.93644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 8.72 37.16 0.32 -2.17 16 2 C 0.08 1.39 4.69 -4.04 -0.02 1.37 16 3 N -0.55 -9.85 2.53 -164.42 -0.42 -10.26 16 4 C 0.56 9.69 7.62 -12.05 -0.09 9.60 16 5 O -0.54 -10.31 15.83 5.38 0.09 -10.22 16 6 C 0.17 2.48 6.39 -82.69 -0.53 1.95 16 7 C -0.19 -2.51 9.68 -38.72 -0.37 -2.88 16 8 C 0.36 4.39 7.53 -16.68 -0.13 4.26 16 9 O -0.30 -3.23 10.49 -18.21 -0.19 -3.42 16 10 C 0.04 0.27 10.41 101.05 1.05 1.32 16 11 N -0.57 -6.62 9.36 -14.65 -0.14 -6.75 16 12 C 0.33 3.69 12.27 -92.30 -1.13 2.56 16 13 N -0.49 -6.76 4.30 -11.20 -0.05 -6.81 16 14 C 0.12 2.18 3.66 -65.67 -0.24 1.94 16 15 H 0.10 1.77 7.03 -51.93 -0.37 1.41 16 16 C -0.16 -2.91 6.04 -24.90 -0.15 -3.06 16 17 C 0.17 3.80 4.20 -3.07 -0.01 3.79 16 18 N -0.60 -14.17 1.84 -169.93 -0.31 -14.48 16 19 C -0.23 -6.05 9.73 -15.06 -0.15 -6.20 16 20 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 21 C 0.00 -0.07 5.49 -17.43 -0.10 -0.16 16 22 N -0.92 -25.28 10.31 55.49 0.57 -24.71 16 23 Si 0.91 21.19 29.55 -169.99 -5.02 16.17 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 C 0.13 2.54 6.36 -2.41 -0.02 2.52 16 28 H 0.04 0.60 6.19 -51.93 -0.32 0.28 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 1.07 4.77 -51.92 -0.25 0.82 16 31 H 0.10 1.62 5.51 -51.93 -0.29 1.34 16 32 H 0.13 2.77 4.39 -51.93 -0.23 2.54 16 33 H 0.16 2.08 7.74 -52.49 -0.41 1.67 16 34 H 0.06 0.45 8.12 -51.93 -0.42 0.02 16 35 H 0.06 0.45 8.12 -51.93 -0.42 0.03 16 36 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.21 1.62 8.06 -52.49 -0.42 1.19 16 38 H 0.06 1.13 7.20 -51.93 -0.37 0.76 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.06 1.54 4.43 -51.93 -0.23 1.31 16 41 H 0.04 1.04 7.50 -51.93 -0.39 0.65 16 42 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 LS Contribution 344.21 15.07 5.19 5.19 Total: -1.00 -29.52 344.21 -7.61 -37.14 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -5.77 Total: 3.33 kcal Atomic # 6 Polarization: 16.40 SS G_CDS: -1.56 Total: 14.84 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: -0.34 Total: -63.01 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.11 Total: -13.64 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.52 -7.61 -37.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033829944.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.950 kcal (2) G-P(sol) polarization free energy of solvation -29.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds