Wall clock time and date at job start Tue Mar 31 2020 13:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46781 * 2 1 4 4 C 1.34781 * 120.00046 * 277.04137 * 3 2 1 5 5 O 1.21481 * 119.99899 * 185.26273 * 4 3 2 6 6 C 1.48451 * 119.99717 * 5.26257 * 4 3 2 7 7 C 1.39183 * 120.51604 * 175.28148 * 6 4 3 8 8 C 1.39597 * 118.20856 * 180.02562 * 7 6 4 9 9 O 1.35507 * 120.49190 * 179.97438 * 8 7 6 10 10 C 1.42898 * 116.99916 * 179.97438 * 9 8 7 11 11 N 1.32666 * 119.01526 * 359.97438 * 8 7 6 12 12 C 1.31861 * 120.94196 * 359.97438 * 11 8 7 13 13 N 1.31554 * 121.98414 * 359.71758 * 12 11 8 14 14 C 1.46496 * 120.00019 * 97.04794 * 3 2 1 15 15 H 1.08997 * 110.89083 * 172.39050 * 14 3 2 16 16 C 1.55154 * 111.00178 * 296.27183 * 14 3 2 17 17 C 1.54322 * 102.94448 * 82.57275 * 16 14 3 18 18 N 1.47019 * 107.27221 * 22.19379 * 17 16 14 19 19 C 1.36940 * 125.65381 * 181.02319 * 18 17 16 20 20 H 1.07993 * 120.00226 * 180.02562 * 19 18 17 21 21 C 1.38814 * 119.99403 * 359.75204 * 19 18 17 22 22 N 1.31619 * 119.99928 * 0.27052 * 21 19 18 23 23 Si 1.86797 * 119.99575 * 180.27472 * 21 19 18 24 24 H 1.48499 * 109.47274 * 59.99613 * 23 21 19 25 25 H 1.48508 * 109.47019 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47072 * 299.99394 * 23 21 19 27 27 C 1.47426 * 108.70000 * 1.28650 * 18 17 16 28 28 H 1.09000 * 109.47493 * 65.36272 * 1 2 3 29 29 H 1.09000 * 109.47094 * 185.36928 * 1 2 3 30 30 H 1.09009 * 109.47110 * 305.36340 * 1 2 3 31 31 H 1.09000 * 109.46489 * 240.00416 * 2 1 3 32 32 H 1.08995 * 109.47336 * 119.99891 * 2 1 3 33 33 H 1.08000 * 120.89701 * 359.97245 * 7 6 4 34 34 H 1.09002 * 109.47614 * 299.99860 * 10 9 8 35 35 H 1.09001 * 109.47156 * 60.00264 * 10 9 8 36 36 H 1.09002 * 109.47232 * 180.02562 * 10 9 8 37 37 H 1.07996 * 119.00886 * 180.02562 * 12 11 8 38 38 H 1.09005 * 110.72351 * 324.21087 * 16 14 3 39 39 H 1.09000 * 110.72026 * 200.93858 * 16 14 3 40 40 H 1.09001 * 109.88210 * 262.77651 * 17 16 14 41 41 H 1.09005 * 109.88651 * 141.60752 * 17 16 14 42 42 H 0.96999 * 119.99538 * 180.02562 * 22 21 19 43 43 H 1.08995 * 110.36712 * 94.48680 * 27 18 17 44 44 H 1.09010 * 110.36880 * 216.80836 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1080 2.0643 -1.1584 5 8 2.6016 3.1743 -1.1724 6 6 1.6035 1.4603 -2.4172 7 6 1.6008 2.1924 -3.6009 8 6 1.1152 1.5773 -4.7561 9 8 1.0909 2.2474 -5.9336 10 6 0.5792 1.5461 -7.0687 11 7 0.6779 0.3268 -4.6840 12 6 0.6980 -0.3337 -3.5430 13 7 1.1527 0.2065 -2.4330 14 6 2.4092 2.0200 1.2591 15 1 2.8720 2.9896 1.0758 16 6 1.1942 2.1554 2.2146 17 6 1.1186 0.7637 2.8770 18 7 2.4495 0.1506 2.7579 19 6 2.7966 -1.0967 3.2040 20 1 3.8055 -1.4573 3.0685 21 6 1.8530 -1.8953 3.8354 22 7 0.6234 -1.4557 4.0006 23 14 2.3284 -3.5937 4.4508 24 1 3.4205 -3.4706 5.4495 25 1 1.1499 -4.2387 5.0836 26 1 2.7928 -4.4218 3.3090 27 6 3.3503 1.1037 2.0843 28 1 -0.3634 0.4284 -0.9341 29 1 -0.3633 -1.0232 0.0962 30 1 -0.3634 0.5948 0.8381 31 1 1.8932 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.9638 3.2093 -3.6249 34 1 1.1840 0.6576 -7.2499 35 1 -0.4526 1.2507 -6.8785 36 1 0.6163 2.1950 -7.9437 37 1 0.3348 -1.3505 -3.5200 38 1 0.2837 2.3654 1.6533 39 1 1.3751 2.9287 2.9612 40 1 0.3797 0.1484 2.3636 41 1 0.8512 0.8677 3.9286 42 1 -0.0358 -2.0137 4.4422 43 1 3.9032 1.6878 2.8199 44 1 4.0379 0.5743 1.4245 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033829944.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:43 Heat of formation + Delta-G solvation = 27.818244 kcal Electronic energy + Delta-G solvation = -28177.174410 eV Core-core repulsion = 24325.183247 eV Total energy + Delta-G solvation = -3851.991163 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.59943 -41.18457 -39.58595 -39.02331 -36.26373 -34.70489 -33.75677 -32.94651 -31.66835 -30.98729 -29.02046 -28.43601 -26.61736 -25.82728 -25.36442 -24.04011 -22.60622 -21.88901 -20.62799 -19.47519 -19.19168 -18.83700 -17.76609 -17.35890 -17.05410 -16.73474 -16.58248 -16.34426 -16.11454 -15.69227 -15.57994 -15.35628 -15.13773 -14.69196 -14.15280 -14.04943 -13.78865 -13.63550 -13.26109 -12.95173 -12.85647 -12.76851 -12.73542 -12.47261 -12.16312 -12.04556 -12.01690 -11.98114 -11.71792 -11.66906 -11.49303 -11.40911 -11.31177 -10.60174 -10.28889 -10.17772 -9.63282 -8.71488 -7.75931 -5.10577 -0.66713 -0.10679 1.52881 1.53367 1.54441 1.60000 1.61206 2.02110 2.55632 2.68898 2.78530 2.98252 3.42676 3.45768 3.69606 3.78906 3.91271 3.97234 4.08300 4.32897 4.41075 4.41514 4.44771 4.48560 4.65279 4.69314 4.72452 4.74471 4.87077 4.89774 4.97187 4.98135 5.06751 5.24740 5.38348 5.51547 5.55085 5.62221 5.75000 5.79389 5.92751 5.96526 6.27800 6.40763 6.79145 6.98466 7.18547 7.83736 8.48247 9.32975 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020151 B = 0.003630 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.198681 B = 7712.542964 C = 8532.037354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.090 3.910 3 N -0.559 5.559 4 C 0.562 3.438 5 O -0.561 6.561 6 C 0.154 3.846 7 C -0.190 4.190 8 C 0.363 3.637 9 O -0.306 6.306 10 C 0.031 3.969 11 N -0.562 5.562 12 C 0.332 3.668 13 N -0.510 5.510 14 C 0.128 3.872 15 H 0.111 0.889 16 C -0.143 4.143 17 C 0.179 3.821 18 N -0.612 5.612 19 C -0.238 4.238 20 H 0.079 0.921 21 C -0.052 4.052 22 N -0.941 5.941 23 Si 0.969 3.031 24 H -0.285 1.285 25 H -0.298 1.298 26 H -0.276 1.276 27 C 0.126 3.874 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.038 0.962 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.164 0.836 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.128 0.872 37 H 0.239 0.761 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.047 0.953 41 H 0.002 0.998 42 H 0.245 0.755 43 H 0.041 0.959 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.544 4.581 -19.582 20.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.032 4.032 3 N -0.288 5.288 4 C 0.348 3.652 5 O -0.440 6.440 6 C 0.010 3.990 7 C -0.214 4.214 8 C 0.174 3.826 9 O -0.210 6.210 10 C -0.063 4.063 11 N -0.293 5.293 12 C 0.045 3.955 13 N -0.231 5.231 14 C 0.024 3.976 15 H 0.129 0.871 16 C -0.182 4.182 17 C 0.054 3.946 18 N -0.339 5.339 19 C -0.366 4.366 20 H 0.096 0.904 21 C -0.246 4.246 22 N -0.590 5.590 23 Si 0.798 3.202 24 H -0.212 1.212 25 H -0.224 1.224 26 H -0.202 1.202 27 C 0.000 4.000 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.126 0.874 32 H 0.111 0.889 33 H 0.181 0.819 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.146 0.854 37 H 0.255 0.745 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.020 0.980 42 H 0.055 0.945 43 H 0.059 0.941 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.600 4.380 -19.535 20.084 hybrid contribution 0.186 -0.332 0.689 0.787 sum -1.413 4.048 -18.846 19.328 Atomic orbital electron populations 1.21939 0.95781 1.01379 0.99937 1.22371 0.95065 0.80318 1.05457 1.47836 1.60680 1.15017 1.05237 1.18069 0.79240 0.84628 0.83263 1.90728 1.46578 1.20517 1.86226 1.21176 0.94019 0.90655 0.93161 1.21860 1.05070 1.04213 0.90287 1.20060 0.88003 0.87701 0.86859 1.86259 1.78313 1.40828 1.15578 1.23277 0.99613 0.98659 0.84734 1.68143 1.21813 1.07733 1.31651 1.25581 0.88660 1.00640 0.80639 1.69055 1.13164 1.10511 1.30372 1.22269 0.95971 0.96724 0.82616 0.87118 1.23157 0.97837 0.98895 0.98272 1.21152 0.87439 0.89652 0.96316 1.44719 1.07299 1.13677 1.68170 1.19252 0.95948 0.90462 1.30987 0.90362 1.25433 0.95931 1.01667 1.01585 1.70145 1.03050 1.37312 1.48454 0.85304 0.76285 0.80460 0.78124 1.21171 1.22398 1.20245 1.22005 0.92688 0.91435 0.93829 0.92819 0.92530 0.94284 0.87384 0.88922 0.81853 0.91619 0.91619 0.85353 0.74528 0.91022 0.89874 0.93473 0.98012 0.94515 0.94083 0.93739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.47 8.72 71.98 0.63 -3.84 16 2 C 0.09 3.19 4.69 86.38 0.41 3.60 16 3 N -0.56 -19.48 2.53 -792.41 -2.01 -21.49 16 4 C 0.56 18.89 7.62 86.97 0.66 19.55 16 5 O -0.56 -20.80 15.83 -3.66 -0.06 -20.85 16 6 C 0.15 4.37 6.39 41.88 0.27 4.63 16 7 C -0.19 -4.79 9.68 22.83 0.22 -4.57 16 8 C 0.36 8.10 7.53 84.90 0.64 8.74 16 9 O -0.31 -5.89 10.49 -88.09 -0.92 -6.82 16 10 C 0.03 0.36 10.41 113.37 1.18 1.54 16 11 N -0.56 -11.62 9.36 -313.02 -2.93 -14.55 16 12 C 0.33 6.62 12.27 180.94 2.22 8.84 16 13 N -0.51 -13.04 4.30 -189.35 -0.81 -13.86 16 14 C 0.13 4.61 3.66 46.46 0.17 4.78 16 15 H 0.11 3.79 7.03 -2.39 -0.02 3.77 16 16 C -0.14 -5.26 6.04 31.78 0.19 -5.07 16 17 C 0.18 8.32 4.20 86.73 0.36 8.68 16 18 N -0.61 -29.27 1.84 -691.54 -1.27 -30.55 16 19 C -0.24 -12.50 9.73 84.03 0.82 -11.68 16 20 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 21 C -0.05 -2.80 5.49 84.86 0.47 -2.34 16 22 N -0.94 -53.25 10.31 21.65 0.22 -53.03 16 23 Si 0.97 43.98 29.55 68.60 2.03 46.01 16 24 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 25 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 26 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 27 C 0.13 5.05 6.36 86.93 0.55 5.60 16 28 H 0.05 1.63 6.19 -2.39 -0.01 1.61 16 29 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.04 1.45 4.77 -2.38 -0.01 1.44 16 31 H 0.11 3.57 5.51 -2.39 -0.01 3.55 16 32 H 0.09 4.05 4.39 -2.39 -0.01 4.04 16 33 H 0.16 4.01 7.74 -2.91 -0.02 3.99 16 34 H 0.07 0.75 8.12 -2.39 -0.02 0.73 16 35 H 0.07 0.75 8.12 -2.39 -0.02 0.73 16 36 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.24 2.92 8.06 -2.91 -0.02 2.90 16 38 H 0.07 2.53 7.20 -2.38 -0.02 2.51 16 39 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 40 H 0.05 2.35 4.43 -2.39 -0.01 2.34 16 41 H 0.00 0.09 7.50 -2.38 -0.02 0.07 16 42 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 43 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -63.80 344.21 4.06 -59.74 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 1.03 Total: 16.94 kcal Atomic # 6 Polarization: 29.68 SS G_CDS: 8.79 Total: 38.46 kcal Atomic # 7 Polarization: -126.67 SS G_CDS: -6.80 Total: -133.47 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.98 Total: -27.67 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -63.80 4.06 -59.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033829944.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.554 kcal (2) G-P(sol) polarization free energy of solvation -63.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds