Wall clock time and date at job start Tue Mar 31 2020 13:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47375 * 2 1 4 4 C 1.34778 * 120.00024 * 83.54994 * 3 2 1 5 5 O 1.21574 * 119.99714 * 185.27782 * 4 3 2 6 6 C 1.47720 * 120.00055 * 5.28208 * 4 3 2 7 7 C 1.40945 * 125.97450 * 174.14106 * 6 4 3 8 8 C 1.36163 * 107.94975 * 179.84677 * 7 6 4 9 9 N 1.35807 * 107.31828 * 0.39000 * 8 7 6 10 10 N 1.31837 * 125.97389 * 354.10563 * 6 4 3 11 11 C 1.47420 * 108.07124 * 179.22270 * 9 8 7 12 12 C 1.54641 * 102.36359 * 344.81351 * 11 9 8 13 13 O 1.36127 * 140.87954 * 180.88035 * 8 7 6 14 14 C 1.46498 * 120.00045 * 263.55718 * 3 2 1 15 15 H 1.09004 * 110.88528 * 10.07205 * 14 3 2 16 16 C 1.55156 * 111.00423 * 246.19447 * 14 3 2 17 17 C 1.54329 * 102.94293 * 277.42443 * 16 14 3 18 18 N 1.47026 * 107.26760 * 337.80879 * 17 16 14 19 19 C 1.36936 * 125.64492 * 178.98717 * 18 17 16 20 20 H 1.08006 * 119.99799 * 179.97438 * 19 18 17 21 21 C 1.38809 * 120.00341 * 359.97211 * 19 18 17 22 22 N 1.31623 * 120.00022 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00200 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47147 * 89.99726 * 23 21 19 25 25 H 1.48500 * 109.46863 * 210.00133 * 23 21 19 26 26 H 1.48503 * 109.46939 * 329.99470 * 23 21 19 27 27 C 1.47424 * 108.70416 * 358.94028 * 18 17 16 28 28 H 1.08995 * 109.46871 * 60.00447 * 1 2 3 29 29 H 1.09006 * 109.47071 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47455 * 300.00313 * 1 2 3 31 31 H 1.08997 * 109.47455 * 239.99687 * 2 1 3 32 32 H 1.09007 * 109.47007 * 119.99986 * 2 1 3 33 33 H 1.08003 * 126.02246 * 359.59211 * 7 6 4 34 34 H 1.08999 * 110.82602 * 103.03286 * 11 9 8 35 35 H 1.09003 * 110.83064 * 226.59470 * 11 9 8 36 36 H 1.09001 * 110.85549 * 266.63245 * 12 11 9 37 37 H 1.08997 * 111.03349 * 143.07534 * 12 11 9 38 38 H 1.09003 * 110.72083 * 35.78679 * 16 14 3 39 39 H 1.08999 * 110.72145 * 159.06266 * 16 14 3 40 40 H 1.09003 * 109.88133 * 97.22127 * 17 16 14 41 41 H 1.08994 * 109.88581 * 218.39312 * 17 16 14 42 42 H 0.96991 * 119.99970 * 180.02562 * 22 21 19 43 43 H 1.09004 * 110.36212 * 265.28858 * 27 18 17 44 44 H 1.09002 * 110.36743 * 142.96970 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1194 2.0602 1.1598 5 8 2.4324 3.2349 1.1511 6 6 1.8499 1.3771 2.4416 7 6 2.0288 1.9275 3.7267 8 6 1.6674 0.9852 4.6408 9 7 1.2839 -0.1204 3.9516 10 7 1.3992 0.1463 2.5834 11 6 0.9064 -1.1592 4.9272 12 6 1.5059 -0.6113 6.2431 13 8 1.5632 0.8039 5.9859 14 6 2.3968 2.0243 -1.2607 15 1 2.0938 1.4164 -2.1133 16 6 3.9198 2.3177 -1.3001 17 6 4.0364 3.6449 -0.5212 18 7 2.7188 4.2955 -0.5678 19 6 2.3964 5.4883 0.0225 20 1 1.3957 5.8839 -0.0707 21 6 3.3556 6.1890 0.7407 22 7 4.5752 5.7071 0.8540 23 14 2.9156 7.8158 1.5465 24 1 2.4225 7.5679 2.9251 25 1 4.1196 8.6833 1.5999 26 1 1.8549 8.4894 0.7550 27 6 1.8024 3.4516 -1.3562 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 2.3928 2.9201 3.9476 34 1 -0.1776 -1.2455 5.0015 35 1 1.3555 -2.1176 4.6662 36 1 2.5039 -1.0155 6.4127 37 1 0.8534 -0.8257 7.0894 38 1 4.4781 1.5265 -0.7996 39 1 4.2621 2.4422 -2.3274 40 1 4.3143 3.4443 0.5136 41 1 4.7830 4.2857 -0.9902 42 1 5.2453 6.1965 1.3561 43 1 1.7789 3.7841 -2.3940 44 1 0.8009 3.4751 -0.9267 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033858256.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:20 Heat of formation + Delta-G solvation = 133.588328 kcal Electronic energy + Delta-G solvation = -28929.037354 eV Core-core repulsion = 25081.632726 eV Total energy + Delta-G solvation = -3847.404628 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.18221 -39.80611 -38.33351 -35.87280 -35.16197 -33.21885 -32.07858 -29.86507 -29.82621 -28.69267 -28.60926 -27.02262 -24.74080 -23.96189 -23.11629 -22.19921 -21.32605 -20.31831 -19.72963 -18.17236 -17.36843 -16.95737 -16.34671 -16.30864 -15.90952 -15.34263 -14.84094 -14.61486 -14.31894 -14.15945 -13.76104 -13.60905 -13.52954 -13.36856 -12.97620 -12.65284 -12.45135 -12.06746 -11.89207 -11.75577 -11.57550 -11.41099 -11.36506 -11.00033 -10.65973 -10.61628 -10.57052 -10.35789 -9.87014 -9.78167 -9.60048 -9.31497 -9.00637 -8.71522 -8.35095 -8.27570 -7.71335 -6.15531 -5.31067 -2.55500 1.59820 1.93621 2.43516 2.80990 3.58205 3.62088 3.66766 3.67561 3.79648 4.12471 4.31125 4.48335 4.72711 4.82294 4.90432 5.00933 5.24664 5.32839 5.38514 5.48918 5.61542 5.72225 5.76713 5.80103 5.81170 5.94437 6.00433 6.06977 6.18090 6.26367 6.37378 6.45551 6.64648 6.69302 6.73812 6.78057 6.88476 6.95682 7.43083 7.65569 7.87686 7.98923 8.12491 8.21750 8.65384 9.18025 9.61320 10.23469 10.89718 11.82445 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012787 B = 0.005298 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.281984 B = 5283.375406 C = 6863.116871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.104 3.896 3 N -0.601 5.601 4 C 0.538 3.462 5 O -0.380 6.380 6 C 0.077 3.923 7 C -0.208 4.208 8 C 0.224 3.776 9 N -0.427 5.427 10 N -0.228 5.228 11 C 0.100 3.900 12 C 0.041 3.959 13 O -0.282 6.282 14 C 0.134 3.866 15 H 0.083 0.917 16 C -0.161 4.161 17 C 0.189 3.811 18 N -0.567 5.567 19 C -0.187 4.187 20 H 0.067 0.933 21 C -0.007 4.007 22 N -0.922 5.922 23 Si 0.898 3.102 24 H -0.294 1.294 25 H -0.296 1.296 26 H -0.287 1.287 27 C 0.130 3.870 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.164 0.836 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.126 0.874 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.031 0.969 42 H 0.243 0.757 43 H 0.023 0.977 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.830 -19.607 5.610 21.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.020 4.020 3 N -0.339 5.339 4 C 0.319 3.681 5 O -0.240 6.240 6 C -0.091 4.091 7 C -0.238 4.238 8 C 0.057 3.943 9 N -0.223 5.223 10 N -0.059 5.059 11 C -0.021 4.021 12 C -0.036 4.036 13 O -0.189 6.189 14 C 0.030 3.970 15 H 0.102 0.898 16 C -0.201 4.201 17 C 0.065 3.935 18 N -0.292 5.292 19 C -0.316 4.316 20 H 0.084 0.916 21 C -0.202 4.202 22 N -0.572 5.572 23 Si 0.730 3.270 24 H -0.222 1.222 25 H -0.222 1.222 26 H -0.213 1.213 27 C 0.002 3.998 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.114 0.886 33 H 0.182 0.818 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.109 0.891 37 H 0.144 0.856 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.049 0.951 42 H 0.054 0.946 43 H 0.040 0.960 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.960 -19.711 5.335 21.574 hybrid contribution -0.151 1.031 1.188 1.581 sum -7.110 -18.680 6.524 21.026 Atomic orbital electron populations 1.22082 0.96592 1.00998 1.01867 1.21730 0.94177 0.83158 1.02898 1.47613 1.66854 1.13510 1.05900 1.17434 0.81914 0.87514 0.81285 1.91716 1.37975 1.10864 1.83478 1.22730 0.99263 0.91177 0.95881 1.20200 1.14170 1.01755 0.87635 1.20758 0.99866 0.92006 0.81683 1.50941 1.53750 1.12571 1.05057 1.77901 1.24579 1.16144 0.87238 1.23096 1.02315 0.91875 0.84820 1.24386 1.03138 0.78566 0.97476 1.87133 1.90105 1.24604 1.17061 1.22310 0.95785 0.94789 0.84091 0.89849 1.23410 0.94708 1.01173 1.00779 1.21114 0.87604 0.87129 0.97665 1.44141 1.06261 1.20673 1.58147 1.18784 0.95339 0.93210 1.24299 0.91552 1.24539 0.96095 0.98399 1.01172 1.69943 1.02328 1.38438 1.46485 0.86308 0.76614 0.84302 0.79729 1.22173 1.22249 1.21279 1.21769 0.94421 0.88686 0.94885 0.93097 0.92649 0.92611 0.91469 0.88614 0.81796 0.88250 0.87471 0.89131 0.85635 0.92411 0.91925 0.92578 0.95069 0.94601 0.95981 0.94651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.77 37.16 0.36 -1.67 16 2 C 0.10 1.46 5.70 -4.05 -0.02 1.43 16 3 N -0.60 -10.71 2.57 -164.83 -0.42 -11.14 16 4 C 0.54 11.35 7.07 -12.39 -0.09 11.26 16 5 O -0.38 -9.79 8.88 5.30 0.05 -9.75 16 6 C 0.08 1.45 6.66 -82.97 -0.55 0.89 16 7 C -0.21 -3.90 10.60 -39.30 -0.42 -4.32 16 8 C 0.22 3.48 8.32 -16.54 -0.14 3.35 16 9 N -0.43 -5.86 5.01 -59.64 -0.30 -6.15 16 10 N -0.23 -3.66 8.07 33.32 0.27 -3.39 16 11 C 0.10 0.76 8.10 -2.68 -0.02 0.73 16 12 C 0.04 0.27 8.08 38.02 0.31 0.58 16 13 O -0.28 -3.59 11.19 -20.14 -0.23 -3.82 16 14 C 0.13 2.44 3.77 -65.79 -0.25 2.19 16 15 H 0.08 1.23 7.90 -51.93 -0.41 0.82 16 16 C -0.16 -3.17 6.52 -24.89 -0.16 -3.33 16 17 C 0.19 4.87 4.22 -3.06 -0.01 4.86 16 18 N -0.57 -15.11 1.73 -170.07 -0.29 -15.41 16 19 C -0.19 -5.53 8.73 -15.06 -0.13 -5.67 16 20 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 21 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 22 N -0.92 -28.73 10.31 55.49 0.57 -28.16 16 23 Si 0.90 23.81 29.55 -169.99 -5.02 18.79 16 24 H -0.29 -7.86 7.11 56.52 0.40 -7.46 16 25 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 26 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 27 C 0.13 2.84 6.18 -2.53 -0.02 2.82 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.84 7.21 -51.93 -0.37 0.47 16 31 H 0.07 0.79 7.92 -51.93 -0.41 0.38 16 32 H 0.10 1.39 5.24 -51.93 -0.27 1.12 16 33 H 0.16 3.28 8.06 -52.48 -0.42 2.86 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.13 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.06 1.64 5.86 -51.93 -0.30 1.33 16 41 H 0.03 0.89 7.50 -51.93 -0.39 0.50 16 42 H 0.24 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 345.10 15.07 5.20 5.20 Total: -1.00 -36.53 345.10 -7.77 -44.30 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -6.36 Total: -3.29 kcal Atomic # 6 Polarization: 14.06 SS G_CDS: -1.24 Total: 12.82 kcal Atomic # 7 Polarization: -64.07 SS G_CDS: -0.18 Total: -64.25 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.18 Total: -13.57 kcal Atomic # 14 Polarization: 23.81 SS G_CDS: -5.02 Total: 18.79 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -36.53 -7.77 -44.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033858256.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.887 kcal (2) G-P(sol) polarization free energy of solvation -36.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds