Wall clock time and date at job start Tue Mar 31 2020 13:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47375 * 2 1 4 4 C 1.34778 * 120.00024 * 83.54994 * 3 2 1 5 5 O 1.21574 * 119.99714 * 185.27782 * 4 3 2 6 6 C 1.47720 * 120.00055 * 5.28208 * 4 3 2 7 7 C 1.40945 * 125.97450 * 174.14106 * 6 4 3 8 8 C 1.36163 * 107.94975 * 179.84677 * 7 6 4 9 9 N 1.35807 * 107.31828 * 0.39000 * 8 7 6 10 10 N 1.31837 * 125.97389 * 354.10563 * 6 4 3 11 11 C 1.47420 * 108.07124 * 179.22270 * 9 8 7 12 12 C 1.54641 * 102.36359 * 344.81351 * 11 9 8 13 13 O 1.36127 * 140.87954 * 180.88035 * 8 7 6 14 14 C 1.46498 * 120.00045 * 263.55718 * 3 2 1 15 15 H 1.09004 * 110.88528 * 10.07205 * 14 3 2 16 16 C 1.55156 * 111.00423 * 246.19447 * 14 3 2 17 17 C 1.54329 * 102.94293 * 277.42443 * 16 14 3 18 18 N 1.47026 * 107.26760 * 337.80879 * 17 16 14 19 19 C 1.36936 * 125.64492 * 178.98717 * 18 17 16 20 20 H 1.08006 * 119.99799 * 179.97438 * 19 18 17 21 21 C 1.38809 * 120.00341 * 359.97211 * 19 18 17 22 22 N 1.31623 * 120.00022 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00200 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47147 * 89.99726 * 23 21 19 25 25 H 1.48500 * 109.46863 * 210.00133 * 23 21 19 26 26 H 1.48503 * 109.46939 * 329.99470 * 23 21 19 27 27 C 1.47424 * 108.70416 * 358.94028 * 18 17 16 28 28 H 1.08995 * 109.46871 * 60.00447 * 1 2 3 29 29 H 1.09006 * 109.47071 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47455 * 300.00313 * 1 2 3 31 31 H 1.08997 * 109.47455 * 239.99687 * 2 1 3 32 32 H 1.09007 * 109.47007 * 119.99986 * 2 1 3 33 33 H 1.08003 * 126.02246 * 359.59211 * 7 6 4 34 34 H 1.08999 * 110.82602 * 103.03286 * 11 9 8 35 35 H 1.09003 * 110.83064 * 226.59470 * 11 9 8 36 36 H 1.09001 * 110.85549 * 266.63245 * 12 11 9 37 37 H 1.08997 * 111.03349 * 143.07534 * 12 11 9 38 38 H 1.09003 * 110.72083 * 35.78679 * 16 14 3 39 39 H 1.08999 * 110.72145 * 159.06266 * 16 14 3 40 40 H 1.09003 * 109.88133 * 97.22127 * 17 16 14 41 41 H 1.08994 * 109.88581 * 218.39312 * 17 16 14 42 42 H 0.96991 * 119.99970 * 180.02562 * 22 21 19 43 43 H 1.09004 * 110.36212 * 265.28858 * 27 18 17 44 44 H 1.09002 * 110.36743 * 142.96970 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1194 2.0602 1.1598 5 8 2.4324 3.2349 1.1511 6 6 1.8499 1.3771 2.4416 7 6 2.0288 1.9275 3.7267 8 6 1.6674 0.9852 4.6408 9 7 1.2839 -0.1204 3.9516 10 7 1.3992 0.1463 2.5834 11 6 0.9064 -1.1592 4.9272 12 6 1.5059 -0.6113 6.2431 13 8 1.5632 0.8039 5.9859 14 6 2.3968 2.0243 -1.2607 15 1 2.0938 1.4164 -2.1133 16 6 3.9198 2.3177 -1.3001 17 6 4.0364 3.6449 -0.5212 18 7 2.7188 4.2955 -0.5678 19 6 2.3964 5.4883 0.0225 20 1 1.3957 5.8839 -0.0707 21 6 3.3556 6.1890 0.7407 22 7 4.5752 5.7071 0.8540 23 14 2.9156 7.8158 1.5465 24 1 2.4225 7.5679 2.9251 25 1 4.1196 8.6833 1.5999 26 1 1.8549 8.4894 0.7550 27 6 1.8024 3.4516 -1.3562 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 2.3928 2.9201 3.9476 34 1 -0.1776 -1.2455 5.0015 35 1 1.3555 -2.1176 4.6662 36 1 2.5039 -1.0155 6.4127 37 1 0.8534 -0.8257 7.0894 38 1 4.4781 1.5265 -0.7996 39 1 4.2621 2.4422 -2.3274 40 1 4.3143 3.4443 0.5136 41 1 4.7830 4.2857 -0.9902 42 1 5.2453 6.1965 1.3561 43 1 1.7789 3.7841 -2.3940 44 1 0.8009 3.4751 -0.9267 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033858256.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:19 Heat of formation + Delta-G solvation = 106.795162 kcal Electronic energy + Delta-G solvation = -28930.199193 eV Core-core repulsion = 25081.632726 eV Total energy + Delta-G solvation = -3848.566467 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.29293 -41.29361 -39.53159 -37.61023 -36.65625 -34.30014 -33.95182 -31.46651 -30.95575 -30.38998 -29.77118 -28.72665 -26.45934 -25.46538 -24.16023 -23.34129 -22.50114 -21.85884 -21.66111 -19.50316 -18.75516 -18.27006 -17.96143 -17.48638 -17.25801 -16.49601 -16.47629 -16.17786 -15.95024 -15.55435 -15.35343 -15.03943 -14.68341 -14.41686 -14.31769 -13.89050 -13.64692 -13.54822 -13.40228 -13.29513 -13.09032 -12.82268 -12.70125 -12.63178 -12.41198 -12.17285 -12.05549 -11.95329 -11.85504 -11.59403 -11.35441 -11.22441 -10.56652 -10.40227 -10.07374 -9.60177 -9.31427 -8.26556 -7.58873 -4.81454 0.33165 0.92218 1.08225 1.43554 1.47973 1.53698 1.80177 2.32763 2.59283 2.64193 3.06824 3.46334 3.59527 3.80830 3.86676 3.89755 4.04698 4.14837 4.26931 4.27169 4.31311 4.43354 4.47962 4.51505 4.58654 4.67247 4.71013 4.76857 4.82862 4.87550 4.95977 5.06000 5.12158 5.16753 5.19369 5.30831 5.52368 5.58481 5.83264 5.87903 6.02201 6.08277 6.42929 6.46427 6.70084 7.37334 7.64871 8.08192 8.71969 9.53434 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012787 B = 0.005298 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.281984 B = 5283.375406 C = 6863.116871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.102 3.898 3 N -0.596 5.596 4 C 0.534 3.466 5 O -0.445 6.445 6 C 0.054 3.946 7 C -0.257 4.257 8 C 0.239 3.761 9 N -0.414 5.414 10 N -0.212 5.212 11 C 0.091 3.909 12 C 0.036 3.964 13 O -0.297 6.297 14 C 0.146 3.854 15 H 0.140 0.860 16 C -0.146 4.146 17 C 0.201 3.799 18 N -0.581 5.581 19 C -0.187 4.187 20 H 0.061 0.939 21 C -0.066 4.066 22 N -0.949 5.949 23 Si 0.955 3.045 24 H -0.301 1.301 25 H -0.297 1.297 26 H -0.272 1.272 27 C 0.124 3.876 28 H 0.052 0.948 29 H 0.084 0.916 30 H 0.027 0.973 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.141 0.859 36 H 0.108 0.892 37 H 0.169 0.831 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.012 0.988 41 H -0.012 1.012 42 H 0.233 0.767 43 H 0.040 0.960 44 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.726 -23.788 5.377 25.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 N -0.332 5.332 4 C 0.316 3.684 5 O -0.311 6.311 6 C -0.111 4.111 7 C -0.287 4.287 8 C 0.070 3.930 9 N -0.212 5.212 10 N -0.043 5.043 11 C -0.027 4.027 12 C -0.038 4.038 13 O -0.204 6.204 14 C 0.043 3.957 15 H 0.157 0.843 16 C -0.185 4.185 17 C 0.076 3.924 18 N -0.305 5.305 19 C -0.317 4.317 20 H 0.079 0.921 21 C -0.258 4.258 22 N -0.602 5.602 23 Si 0.787 3.213 24 H -0.229 1.229 25 H -0.223 1.223 26 H -0.197 1.197 27 C -0.002 4.002 28 H 0.072 0.928 29 H 0.103 0.897 30 H 0.046 0.954 31 H 0.121 0.879 32 H 0.110 0.890 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.158 0.842 36 H 0.126 0.874 37 H 0.187 0.813 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.030 0.970 41 H 0.006 0.994 42 H 0.043 0.957 43 H 0.058 0.942 44 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -8.912 -23.982 5.084 26.085 hybrid contribution 0.318 2.112 1.423 2.567 sum -8.593 -21.870 6.507 24.382 Atomic orbital electron populations 1.22001 0.95616 1.02466 1.00610 1.21994 0.94845 0.80755 1.04443 1.47742 1.65756 1.14859 1.04828 1.17815 0.80743 0.87168 0.82708 1.91676 1.41073 1.13546 1.84756 1.22293 1.01547 0.92387 0.94907 1.20003 1.17525 1.01756 0.89396 1.20493 0.98087 0.91534 0.82932 1.51394 1.51774 1.13545 1.04492 1.77771 1.23454 1.14257 0.88811 1.23755 1.04347 0.91554 0.83082 1.24963 1.05416 0.75005 0.98460 1.87144 1.89594 1.28681 1.15013 1.22348 0.93935 0.93550 0.85917 0.84263 1.23251 0.96432 0.97617 1.01203 1.20760 0.86416 0.89409 0.95796 1.44286 1.07637 1.20505 1.58093 1.19029 0.94810 0.94296 1.23550 0.92113 1.25215 0.96298 1.01667 1.02605 1.70189 1.03022 1.39411 1.47528 0.85384 0.76488 0.81030 0.78441 1.22926 1.22341 1.19719 1.21982 0.93138 0.90559 0.94527 0.92842 0.89724 0.95386 0.87863 0.89038 0.85277 0.85717 0.84158 0.87402 0.81323 0.91328 0.89224 0.97009 0.99388 0.95738 0.94224 0.95902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 9.77 71.98 0.70 -2.67 16 2 C 0.10 2.50 5.70 86.38 0.49 2.99 16 3 N -0.60 -20.51 2.57 -793.66 -2.04 -22.55 16 4 C 0.53 23.41 7.07 86.75 0.61 24.02 16 5 O -0.45 -24.58 8.88 -3.95 -0.04 -24.62 16 6 C 0.05 2.14 6.66 42.31 0.28 2.42 16 7 C -0.26 -10.38 10.60 22.45 0.24 -10.14 16 8 C 0.24 7.45 8.32 83.59 0.70 8.14 16 9 N -0.41 -10.54 5.01 -453.36 -2.27 -12.81 16 10 N -0.21 -6.56 8.07 -48.51 -0.39 -6.95 16 11 C 0.09 0.97 8.10 86.76 0.70 1.67 16 12 C 0.04 0.34 8.08 72.54 0.59 0.92 16 13 O -0.30 -7.14 11.19 -94.99 -1.06 -8.20 16 14 C 0.15 4.96 3.77 46.38 0.17 5.14 16 15 H 0.14 3.30 7.90 -2.39 -0.02 3.28 16 16 C -0.15 -5.57 6.52 31.78 0.21 -5.36 16 17 C 0.20 10.87 4.22 86.73 0.37 11.24 16 18 N -0.58 -32.24 1.73 -691.97 -1.20 -33.44 16 19 C -0.19 -11.58 8.73 84.03 0.73 -10.85 16 20 H 0.06 3.72 7.83 -2.91 -0.02 3.70 16 21 C -0.07 -4.20 5.49 84.86 0.47 -3.74 16 22 N -0.95 -63.27 10.31 21.65 0.22 -63.05 16 23 Si 0.96 51.59 29.55 68.60 2.03 53.62 16 24 H -0.30 -16.42 7.11 99.48 0.71 -15.71 16 25 H -0.30 -15.89 7.11 99.48 0.71 -15.19 16 26 H -0.27 -13.85 7.11 99.48 0.71 -13.15 16 27 C 0.12 5.38 6.18 86.85 0.54 5.92 16 28 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.03 0.79 7.21 -2.39 -0.02 0.77 16 31 H 0.10 1.86 7.92 -2.39 -0.02 1.84 16 32 H 0.09 2.39 5.24 -2.38 -0.01 2.38 16 33 H 0.13 5.95 8.06 -2.91 -0.02 5.92 16 34 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.17 0.16 8.14 -2.39 -0.02 0.14 16 38 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 40 H 0.01 0.74 5.86 -2.39 -0.01 0.73 16 41 H -0.01 -0.73 7.50 -2.39 -0.02 -0.75 16 42 H 0.23 15.30 8.31 -92.71 -0.77 14.53 16 43 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 44 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -90.14 345.10 3.06 -87.08 By element: Atomic # 1 Polarization: 0.19 SS G_CDS: 1.01 Total: 1.20 kcal Atomic # 6 Polarization: 22.92 SS G_CDS: 6.80 Total: 29.72 kcal Atomic # 7 Polarization: -133.11 SS G_CDS: -5.68 Total: -138.79 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -1.10 Total: -32.82 kcal Atomic # 14 Polarization: 51.59 SS G_CDS: 2.03 Total: 53.62 kcal Total: -90.14 3.06 -87.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033858256.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.874 kcal (2) G-P(sol) polarization free energy of solvation -90.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds