Wall clock time and date at job start Tue Mar 31 2020 13:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47147 * 2 1 4 4 C 1.34771 * 119.99890 * 274.88203 * 3 2 1 5 5 O 1.21574 * 119.99382 * 184.40260 * 4 3 2 6 6 C 1.47722 * 120.00509 * 4.39311 * 4 3 2 7 7 C 1.40939 * 125.97560 * 184.80508 * 6 4 3 8 8 C 1.36168 * 107.95133 * 180.02562 * 7 6 4 9 9 N 1.35798 * 107.31382 * 359.97438 * 8 7 6 10 10 N 1.31831 * 125.97038 * 5.11965 * 6 4 3 11 11 C 1.47423 * 108.06903 * 180.49096 * 9 8 7 12 12 C 1.54646 * 102.35622 * 15.28096 * 11 9 8 13 13 O 1.36124 * 140.87188 * 179.28185 * 8 7 6 14 14 C 1.46498 * 119.99459 * 94.87439 * 3 2 1 15 15 H 1.09000 * 110.64470 * 1.69532 * 14 3 2 16 16 C 1.55163 * 110.71801 * 125.02666 * 14 3 2 17 17 C 1.54905 * 101.58282 * 153.86422 * 16 14 3 18 18 N 1.47428 * 104.83217 * 322.98819 * 17 16 14 19 19 C 1.36940 * 125.65030 * 204.16267 * 18 17 16 20 20 H 1.07991 * 119.99794 * 156.93874 * 19 18 17 21 21 C 1.38807 * 119.99676 * 336.94004 * 19 18 17 22 22 N 1.31626 * 119.99899 * 159.15274 * 21 19 18 23 23 Si 1.86803 * 120.00522 * 339.15288 * 21 19 18 24 24 H 1.48506 * 109.46819 * 84.43832 * 23 21 19 25 25 H 1.48498 * 109.47396 * 204.44241 * 23 21 19 26 26 H 1.48496 * 109.47006 * 324.44356 * 23 21 19 27 27 C 1.47026 * 108.69978 * 24.13164 * 18 17 16 28 28 H 1.08994 * 109.47245 * 59.99816 * 1 2 3 29 29 H 1.09002 * 109.47071 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46796 * 299.99261 * 1 2 3 31 31 H 1.09000 * 109.47458 * 120.00840 * 2 1 3 32 32 H 1.08999 * 109.46691 * 240.00194 * 2 1 3 33 33 H 1.08004 * 126.02620 * 0.14730 * 7 6 4 34 34 H 1.09004 * 110.83237 * 133.50056 * 11 9 8 35 35 H 1.09006 * 110.83066 * 257.06441 * 11 9 8 36 36 H 1.08994 * 110.85141 * 93.34505 * 12 11 9 37 37 H 1.09003 * 110.85299 * 216.98441 * 12 11 9 38 38 H 1.09004 * 111.00399 * 271.94342 * 16 14 3 39 39 H 1.09012 * 111.00129 * 35.78789 * 16 14 3 40 40 H 1.09000 * 110.36468 * 204.15564 * 17 16 14 41 41 H 1.08990 * 110.46110 * 81.87849 * 17 16 14 42 42 H 0.96994 * 120.00183 * 179.97438 * 22 21 19 43 43 H 1.09002 * 109.87723 * 239.51760 * 27 18 17 44 44 H 1.09004 * 109.87731 * 118.35734 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1493 2.0496 -1.1629 5 8 2.6295 3.1665 -1.1712 6 6 1.7097 1.4252 -2.4274 7 6 1.8732 1.9661 -3.7186 8 6 1.3359 1.0899 -4.6118 9 7 0.8531 0.0364 -3.9040 10 7 1.0906 0.2673 -2.5450 11 6 0.2772 -0.9295 -4.8573 12 6 0.8603 -0.4502 -6.2070 13 8 1.1243 0.9410 -5.9482 14 6 2.3641 2.0358 1.2642 15 1 2.2297 1.3505 2.1011 16 6 3.8172 2.5783 1.2220 17 6 3.7454 3.7398 2.2444 18 7 2.4093 4.3317 2.0499 19 6 2.0524 5.6164 2.3618 20 1 1.2098 6.0777 1.8683 21 6 2.7736 6.3257 3.3122 22 7 2.7219 7.6409 3.3312 23 14 3.8179 5.4141 4.5644 24 1 5.1459 5.1096 3.9737 25 1 3.9953 6.2607 5.7714 26 1 3.1426 4.1470 4.9435 27 6 1.5236 3.3143 1.4648 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.8934 -0.5140 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 2.3437 2.9084 -3.9577 34 1 0.6083 -1.9429 -4.6300 35 1 -0.8111 -0.8681 -4.8616 36 1 1.7818 -0.9825 -6.4425 37 1 0.1295 -0.5641 -7.0077 38 1 4.5279 1.8173 1.5444 39 1 4.0675 2.9480 0.2275 40 1 4.5208 4.4770 2.0360 41 1 3.8476 3.3596 3.2607 42 1 3.2256 8.1365 3.9956 43 1 1.1430 3.6623 0.5045 44 1 0.6947 3.1105 2.1427 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033858257.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:22 Heat of formation + Delta-G solvation = 65.521088 kcal Electronic energy + Delta-G solvation = -27858.738463 eV Core-core repulsion = 24008.382217 eV Total energy + Delta-G solvation = -3850.356245 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.37533 -41.49513 -39.61896 -38.52242 -36.90598 -34.56622 -34.16294 -32.18050 -31.02686 -30.74608 -29.93354 -29.26982 -26.59729 -25.32793 -24.26115 -23.33855 -22.82341 -22.52904 -21.94933 -19.90609 -19.02188 -18.43686 -18.06034 -17.59860 -17.36752 -17.15504 -16.51715 -16.34314 -15.99613 -15.90072 -15.41044 -15.08384 -14.98568 -14.76707 -14.60993 -14.33034 -14.05893 -13.93280 -13.80469 -13.60979 -13.10634 -13.06085 -12.87824 -12.73161 -12.56475 -12.44033 -12.31512 -12.09002 -11.95888 -11.92758 -11.55824 -11.52680 -10.81763 -10.79308 -10.23798 -9.71395 -9.60335 -8.98412 -8.17937 -5.47819 0.14989 0.83796 0.93798 1.33254 1.39688 1.51069 1.62802 2.10006 2.22390 2.44017 2.98580 3.03300 3.32941 3.43499 3.66969 3.76959 3.86977 3.89391 4.04216 4.14530 4.23926 4.27058 4.38507 4.44289 4.47975 4.49686 4.50937 4.64873 4.66301 4.75479 4.79242 4.82129 4.96065 4.98464 5.05487 5.09410 5.19084 5.30318 5.47757 5.68795 5.71462 5.79705 6.10341 6.26145 6.41476 6.77079 7.06233 7.53334 8.11867 9.03012 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026514 B = 0.003219 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.772567 B = 8697.368757 C = 9207.026352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.104 3.896 3 N -0.585 5.585 4 C 0.588 3.412 5 O -0.545 6.545 6 C 0.041 3.959 7 C -0.247 4.247 8 C 0.241 3.759 9 N -0.410 5.410 10 N -0.203 5.203 11 C 0.089 3.911 12 C 0.038 3.962 13 O -0.294 6.294 14 C 0.150 3.850 15 H 0.138 0.862 16 C -0.136 4.136 17 C 0.112 3.888 18 N -0.620 5.620 19 C -0.238 4.238 20 H 0.041 0.959 21 C -0.039 4.039 22 N -0.961 5.961 23 Si 0.958 3.042 24 H -0.269 1.269 25 H -0.304 1.304 26 H -0.258 1.258 27 C 0.130 3.870 28 H 0.041 0.959 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.149 0.851 34 H 0.142 0.858 35 H 0.124 0.876 36 H 0.112 0.888 37 H 0.167 0.833 38 H 0.106 0.894 39 H 0.073 0.927 40 H 0.032 0.968 41 H 0.037 0.963 42 H 0.264 0.736 43 H 0.013 0.987 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.235 -30.197 -18.339 35.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.017 4.017 3 N -0.317 5.317 4 C 0.374 3.626 5 O -0.420 6.420 6 C -0.123 4.123 7 C -0.277 4.277 8 C 0.071 3.929 9 N -0.208 5.208 10 N -0.035 5.035 11 C -0.029 4.029 12 C -0.037 4.037 13 O -0.201 6.201 14 C 0.046 3.954 15 H 0.156 0.844 16 C -0.175 4.175 17 C -0.013 4.013 18 N -0.347 5.347 19 C -0.366 4.366 20 H 0.059 0.941 21 C -0.233 4.233 22 N -0.608 5.608 23 Si 0.785 3.215 24 H -0.195 1.195 25 H -0.233 1.233 26 H -0.182 1.182 27 C 0.004 3.996 28 H 0.060 0.940 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.126 0.874 32 H 0.114 0.886 33 H 0.167 0.833 34 H 0.160 0.840 35 H 0.142 0.858 36 H 0.130 0.870 37 H 0.184 0.816 38 H 0.124 0.876 39 H 0.092 0.908 40 H 0.050 0.950 41 H 0.055 0.945 42 H 0.072 0.928 43 H 0.031 0.969 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.526 -30.402 -17.841 35.539 hybrid contribution 0.471 1.498 0.083 1.573 sum -4.055 -28.903 -17.758 34.164 Atomic orbital electron populations 1.22069 0.95292 1.03033 1.00945 1.22048 0.95240 0.79506 1.04914 1.47891 1.64001 1.15384 1.04409 1.17256 0.78510 0.84411 0.82434 1.90888 1.44668 1.20120 1.86288 1.21672 1.02209 0.94416 0.94054 1.20072 1.14517 1.04313 0.88831 1.20592 0.96872 0.92274 0.83120 1.51341 1.46140 1.18832 1.04475 1.77861 1.19954 1.15710 0.89948 1.23817 1.01525 0.94172 0.83414 1.24965 1.04601 0.76560 0.97550 1.87162 1.86716 1.30194 1.16034 1.22130 0.94013 0.93512 0.85741 0.84421 1.23144 0.96752 0.97397 1.00185 1.22001 0.87415 0.94848 0.97039 1.44618 1.07026 1.08876 1.74212 1.18477 1.14280 0.87286 1.16598 0.94073 1.25837 1.01144 0.95892 1.00456 1.69992 1.46354 1.06932 1.37486 0.85725 0.79203 0.78117 0.78415 1.19471 1.23252 1.18223 1.21672 0.93248 0.88913 0.95754 0.94025 0.89316 0.93487 0.87375 0.88567 0.83279 0.84022 0.85834 0.87029 0.81552 0.87552 0.90805 0.94991 0.94517 0.92752 0.96870 0.94677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 9.62 71.98 0.69 -2.30 16 2 C 0.10 2.05 5.69 86.38 0.49 2.55 16 3 N -0.59 -17.14 2.55 -794.76 -2.03 -19.16 16 4 C 0.59 20.82 6.73 86.75 0.58 21.40 16 5 O -0.54 -24.62 13.28 -3.95 -0.05 -24.67 16 6 C 0.04 1.24 6.57 42.31 0.28 1.52 16 7 C -0.25 -7.27 10.60 22.45 0.24 -7.03 16 8 C 0.24 5.43 8.32 83.60 0.70 6.12 16 9 N -0.41 -7.51 5.01 -453.34 -2.27 -9.78 16 10 N -0.20 -4.80 7.49 -48.52 -0.36 -5.16 16 11 C 0.09 0.45 8.10 86.76 0.70 1.15 16 12 C 0.04 0.13 8.08 72.54 0.59 0.71 16 13 O -0.29 -4.87 11.19 -94.96 -1.06 -5.93 16 14 C 0.15 4.94 3.45 46.18 0.16 5.10 16 15 H 0.14 3.48 7.80 -2.39 -0.02 3.46 16 16 C -0.14 -4.94 6.39 31.99 0.20 -4.74 16 17 C 0.11 5.15 4.73 86.85 0.41 5.57 16 18 N -0.62 -33.43 3.15 -692.01 -2.18 -35.61 16 19 C -0.24 -15.22 10.56 84.03 0.89 -14.34 16 20 H 0.04 2.92 8.06 -2.92 -0.02 2.90 16 21 C -0.04 -2.49 5.44 84.86 0.46 -2.03 16 22 N -0.96 -64.93 13.97 21.65 0.30 -64.63 16 23 Si 0.96 49.32 24.31 68.60 1.67 50.98 16 24 H -0.27 -13.07 6.64 99.48 0.66 -12.41 16 25 H -0.30 -15.57 7.11 99.48 0.71 -14.86 16 26 H -0.26 -12.36 6.75 99.48 0.67 -11.69 16 27 C 0.13 5.82 6.51 86.73 0.56 6.38 16 28 H 0.04 0.99 6.41 -2.39 -0.02 0.97 16 29 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.11 1.51 7.84 -2.39 -0.02 1.49 16 32 H 0.10 1.85 5.79 -2.39 -0.01 1.83 16 33 H 0.15 4.65 8.06 -2.91 -0.02 4.62 16 34 H 0.14 -0.08 8.14 -2.38 -0.02 -0.10 16 35 H 0.12 0.22 8.14 -2.38 -0.02 0.20 16 36 H 0.11 0.02 8.14 -2.39 -0.02 0.01 16 37 H 0.17 -0.67 8.14 -2.39 -0.02 -0.69 16 38 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 39 H 0.07 3.09 5.66 -2.38 -0.01 3.08 16 40 H 0.03 1.62 7.07 -2.39 -0.02 1.60 16 41 H 0.04 1.61 5.47 -2.39 -0.01 1.60 16 42 H 0.26 16.72 8.31 -92.71 -0.77 15.94 16 43 H 0.01 0.67 6.41 -2.39 -0.02 0.65 16 44 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -90.59 344.24 1.91 -88.68 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: 0.94 Total: 5.20 kcal Atomic # 6 Polarization: 13.11 SS G_CDS: 6.96 Total: 20.07 kcal Atomic # 7 Polarization: -127.80 SS G_CDS: -6.54 Total: -134.33 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -1.12 Total: -30.60 kcal Atomic # 14 Polarization: 49.32 SS G_CDS: 1.67 Total: 50.98 kcal Total: -90.59 1.91 -88.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033858257.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.201 kcal (2) G-P(sol) polarization free energy of solvation -90.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds