Wall clock time and date at job start Tue Mar 31 2020 13:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46491 * 109.47554 * 2 1 4 4 C 1.34776 * 120.00110 * 86.84524 * 3 2 1 5 5 O 1.21499 * 120.00344 * 174.42157 * 4 3 2 6 6 C 1.48304 * 119.99759 * 354.42466 * 4 3 2 7 7 N 1.32541 * 119.11053 * 353.35561 * 6 4 3 8 8 C 1.31958 * 120.83358 * 179.71828 * 7 6 4 9 9 C 1.39449 * 119.08395 * 0.54796 * 8 7 6 10 10 O 1.35730 * 120.80692 * 179.71005 * 9 8 7 11 11 C 1.42894 * 116.99944 * 0.02562 * 10 9 8 12 12 C 1.39448 * 118.37959 * 359.73069 * 9 8 7 13 13 N 1.31953 * 119.08898 * 359.97438 * 12 9 8 14 14 C 1.46502 * 120.00367 * 266.57565 * 3 2 1 15 15 H 1.09001 * 110.88264 * 11.38363 * 14 3 2 16 16 C 1.55154 * 111.00530 * 247.50265 * 14 3 2 17 17 C 1.54325 * 102.94311 * 277.42573 * 16 14 3 18 18 N 1.47022 * 107.26858 * 337.80568 * 17 16 14 19 19 C 1.36944 * 125.64624 * 178.98588 * 18 17 16 20 20 H 1.07997 * 119.99312 * 179.97438 * 19 18 17 21 21 C 1.38808 * 120.00215 * 359.97438 * 19 18 17 22 22 N 1.31625 * 119.99888 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00187 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47234 * 89.99782 * 23 21 19 25 25 H 1.48500 * 109.46946 * 210.00192 * 23 21 19 26 26 H 1.48502 * 109.46846 * 329.99679 * 23 21 19 27 27 C 1.47425 * 108.70508 * 358.94437 * 18 17 16 28 28 H 1.09005 * 109.46872 * 299.99638 * 1 2 3 29 29 H 1.08990 * 109.46887 * 59.99598 * 1 2 3 30 30 H 1.08996 * 109.47251 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46746 * 239.99822 * 2 1 3 32 32 H 1.09007 * 109.47122 * 120.00465 * 2 1 3 33 33 H 1.07999 * 120.45303 * 180.27643 * 8 7 6 34 34 H 1.08998 * 109.47326 * 299.99795 * 11 10 9 35 35 H 1.09002 * 109.47361 * 60.00377 * 11 10 9 36 36 H 1.09002 * 109.46740 * 180.02562 * 11 10 9 37 37 H 1.08002 * 120.45350 * 180.02562 * 12 9 8 38 38 H 1.09003 * 110.72225 * 35.78703 * 16 14 3 39 39 H 1.08999 * 110.72199 * 158.88176 * 16 14 3 40 40 H 1.08998 * 109.88525 * 97.22165 * 17 16 14 41 41 H 1.08998 * 109.88164 * 218.23730 * 17 16 14 42 42 H 0.96995 * 120.00191 * 180.02562 * 22 21 19 43 43 H 1.09009 * 110.36189 * 265.28909 * 27 18 17 44 44 H 1.08999 * 110.36784 * 142.96831 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1826 2.0379 1.1654 5 8 2.6823 3.1453 1.1736 6 6 1.7531 1.4087 2.4379 7 7 1.0910 0.2613 2.3986 8 6 0.6976 -0.3310 3.5103 9 6 0.9776 0.2728 4.7357 10 8 0.5841 -0.3028 5.9002 11 6 -0.1211 -1.5419 5.8056 12 6 1.6712 1.4826 4.7354 13 7 2.0375 2.0117 3.5835 14 6 2.3341 2.0465 -1.2664 15 1 1.9685 1.4648 -2.1127 16 6 3.8578 2.3118 -1.3906 17 6 4.0476 3.6177 -0.5905 18 7 2.7431 4.2942 -0.5434 19 6 2.4809 5.4787 0.0918 20 1 1.4848 5.8953 0.0677 21 6 3.4953 6.1438 0.7667 22 7 4.7091 5.6357 0.7965 23 14 3.1374 7.7592 1.6338 24 1 2.7224 7.4883 3.0336 25 1 4.3599 8.6022 1.6342 26 1 2.0454 8.4713 0.9227 27 6 1.7644 3.4867 -1.2940 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 0.1623 -1.2682 3.4713 34 1 -1.0337 -1.3974 5.2274 35 1 0.5088 -2.2817 5.3115 36 1 -0.3767 -1.8918 6.8058 37 1 1.9061 1.9791 5.6653 38 1 4.4286 1.4985 -0.9424 39 1 4.1413 2.4507 -2.4339 40 1 4.3826 3.3875 0.4208 41 1 4.7799 4.2538 -1.0877 42 1 5.4179 6.1002 1.2684 43 1 1.6859 3.8440 -2.3209 44 1 0.7909 3.5191 -0.8047 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033891665.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:22 Heat of formation + Delta-G solvation = 93.873060 kcal Electronic energy + Delta-G solvation = -28832.471420 eV Core-core repulsion = 24983.344608 eV Total energy + Delta-G solvation = -3849.126812 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.40905 -39.65619 -38.56856 -35.88494 -35.39891 -33.62932 -32.08435 -31.02428 -29.79656 -28.73770 -28.09162 -26.98927 -24.85361 -24.50131 -23.88542 -22.77956 -21.29311 -19.77231 -18.83790 -18.39741 -18.02833 -17.08749 -16.36763 -16.28215 -15.57439 -15.44110 -14.93837 -14.72805 -14.36708 -14.08515 -13.90536 -13.82080 -13.55097 -13.37080 -12.89619 -12.32410 -12.08022 -12.00109 -11.75923 -11.59915 -11.54405 -11.51187 -11.25089 -11.02487 -10.65843 -10.62117 -10.55511 -10.42489 -9.87389 -9.86838 -9.58099 -9.32615 -9.00825 -8.79029 -8.49382 -8.38553 -7.68870 -6.17769 -5.32151 -2.57159 0.67816 1.00435 2.77026 3.25172 3.33055 3.61819 3.66230 3.67429 4.03022 4.13161 4.24137 4.44709 4.53676 4.73600 4.81228 4.82062 5.06012 5.15035 5.37266 5.49624 5.55006 5.59148 5.77874 5.81067 5.81623 5.92243 5.98873 6.04277 6.15729 6.30160 6.39834 6.60049 6.63796 6.65388 6.72033 6.73135 6.85814 7.01417 7.42422 7.86447 7.93689 8.00547 8.20475 8.24631 8.64783 9.19865 9.59876 10.21987 10.86919 11.80766 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013518 B = 0.005102 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.748819 B = 5487.003416 C = 7000.226643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.119 3.881 3 N -0.599 5.599 4 C 0.516 3.484 5 O -0.360 6.360 6 C 0.258 3.742 7 N -0.451 5.451 8 C 0.050 3.950 9 C 0.025 3.975 10 O -0.303 6.303 11 C 0.022 3.978 12 C 0.123 3.877 13 N -0.423 5.423 14 C 0.137 3.863 15 H 0.085 0.915 16 C -0.161 4.161 17 C 0.191 3.809 18 N -0.567 5.567 19 C -0.199 4.199 20 H 0.066 0.934 21 C -0.001 4.001 22 N -0.916 5.916 23 Si 0.899 3.101 24 H -0.293 1.293 25 H -0.295 1.295 26 H -0.287 1.287 27 C 0.127 3.873 28 H 0.060 0.940 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.169 0.831 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.105 0.895 37 H 0.177 0.823 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.030 0.970 42 H 0.244 0.756 43 H 0.024 0.976 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.474 -19.736 4.583 22.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.004 4.004 3 N -0.338 5.338 4 C 0.295 3.705 5 O -0.219 6.219 6 C -0.010 4.010 7 N -0.169 5.169 8 C -0.117 4.117 9 C -0.026 4.026 10 O -0.214 6.214 11 C -0.073 4.073 12 C -0.047 4.047 13 N -0.137 5.137 14 C 0.033 3.967 15 H 0.103 0.897 16 C -0.200 4.200 17 C 0.066 3.934 18 N -0.292 5.292 19 C -0.328 4.328 20 H 0.084 0.916 21 C -0.197 4.197 22 N -0.565 5.565 23 Si 0.731 3.269 24 H -0.221 1.221 25 H -0.222 1.222 26 H -0.213 1.213 27 C 0.000 4.000 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.186 0.814 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.123 0.877 37 H 0.194 0.806 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.048 0.952 42 H 0.055 0.945 43 H 0.041 0.959 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.717 -18.348 4.058 20.715 hybrid contribution -0.813 -0.093 1.423 1.642 sum -9.529 -18.442 5.481 21.470 Atomic orbital electron populations 1.22085 0.96694 1.00673 1.01489 1.21622 0.94236 0.82751 1.01838 1.47457 1.67804 1.13767 1.04774 1.17557 0.84345 0.87050 0.81507 1.91623 1.32987 1.14392 1.82944 1.23655 0.94122 0.88543 0.94684 1.68969 1.09195 1.09518 1.29222 1.23504 1.00026 1.00904 0.87294 1.21190 0.98046 0.96053 0.87308 1.86069 1.70773 1.37429 1.27084 1.23166 0.95835 0.83760 1.04563 1.22916 0.93818 0.90307 0.97610 1.68412 1.16306 1.31578 0.97405 1.22268 0.96156 0.94333 0.83964 0.89727 1.23401 0.94809 1.01221 1.00602 1.21172 0.87595 0.87118 0.97466 1.44228 1.04600 1.21972 1.58449 1.18771 0.94574 0.94441 1.25014 0.91611 1.24547 0.95860 0.98415 1.00858 1.69944 1.00456 1.38708 1.47349 0.86300 0.76473 0.84024 0.80061 1.22057 1.22158 1.21285 1.21812 0.93846 0.88965 0.95378 0.92102 0.93708 0.93002 0.92326 0.89161 0.81371 0.92282 0.92272 0.87714 0.80551 0.92448 0.92016 0.91723 0.95222 0.94541 0.95910 0.94805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.54 37.16 0.35 -1.48 16 2 C 0.12 1.60 5.64 -4.05 -0.02 1.58 16 3 N -0.60 -10.67 2.56 -164.61 -0.42 -11.09 16 4 C 0.52 11.04 7.16 -12.12 -0.09 10.95 16 5 O -0.36 -9.53 8.76 5.37 0.05 -9.48 16 6 C 0.26 4.81 7.40 -157.04 -1.16 3.65 16 7 N -0.45 -6.49 3.98 -11.03 -0.04 -6.53 16 8 C 0.05 0.56 10.31 -17.05 -0.18 0.39 16 9 C 0.02 0.29 6.75 -38.68 -0.26 0.03 16 10 O -0.30 -2.94 10.51 -18.90 -0.20 -3.14 16 11 C 0.02 0.12 9.84 101.05 0.99 1.11 16 12 C 0.12 1.79 11.28 -17.05 -0.19 1.60 16 13 N -0.42 -8.14 10.12 -11.03 -0.11 -8.25 16 14 C 0.14 2.49 3.76 -65.78 -0.25 2.24 16 15 H 0.08 1.24 7.95 -51.93 -0.41 0.83 16 16 C -0.16 -3.19 6.53 -24.90 -0.16 -3.35 16 17 C 0.19 4.97 4.20 -3.06 -0.01 4.96 16 18 N -0.57 -15.30 1.76 -170.07 -0.30 -15.60 16 19 C -0.20 -5.97 8.94 -15.06 -0.13 -6.10 16 20 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 21 C 0.00 -0.04 5.48 -17.43 -0.10 -0.13 16 22 N -0.92 -28.90 10.31 55.49 0.57 -28.33 16 23 Si 0.90 24.12 29.55 -169.99 -5.02 19.09 16 24 H -0.29 -7.96 7.11 56.52 0.40 -7.56 16 25 H -0.29 -7.90 7.11 56.52 0.40 -7.50 16 26 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 27 C 0.13 2.80 6.26 -2.53 -0.02 2.79 16 28 H 0.06 0.85 6.33 -51.93 -0.33 0.53 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.68 7.99 -51.93 -0.41 0.26 16 32 H 0.09 1.23 5.60 -51.93 -0.29 0.94 16 33 H 0.17 1.20 6.47 -52.49 -0.34 0.87 16 34 H 0.06 0.26 7.71 -51.93 -0.40 -0.14 16 35 H 0.06 0.25 7.71 -51.93 -0.40 -0.15 16 36 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.18 2.12 8.06 -52.49 -0.42 1.69 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.07 1.93 5.51 -51.93 -0.29 1.64 16 41 H 0.03 0.86 7.50 -51.93 -0.39 0.47 16 42 H 0.24 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 44 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 345.93 15.07 5.21 5.21 Total: -1.00 -36.73 345.93 -7.68 -44.40 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -6.19 Total: -4.52 kcal Atomic # 6 Polarization: 19.45 SS G_CDS: -1.22 Total: 18.23 kcal Atomic # 7 Polarization: -69.50 SS G_CDS: -0.30 Total: -69.80 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -0.15 Total: -12.62 kcal Atomic # 14 Polarization: 24.12 SS G_CDS: -5.02 Total: 19.09 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -36.73 -7.68 -44.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033891665.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.277 kcal (2) G-P(sol) polarization free energy of solvation -36.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds