Wall clock time and date at job start Tue Mar 31 2020 13:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46491 * 109.47554 * 2 1 4 4 C 1.34776 * 120.00110 * 86.84524 * 3 2 1 5 5 O 1.21499 * 120.00344 * 174.42157 * 4 3 2 6 6 C 1.48304 * 119.99759 * 354.42466 * 4 3 2 7 7 N 1.32541 * 119.11053 * 353.35561 * 6 4 3 8 8 C 1.31958 * 120.83358 * 179.71828 * 7 6 4 9 9 C 1.39449 * 119.08395 * 0.54796 * 8 7 6 10 10 O 1.35730 * 120.80692 * 179.71005 * 9 8 7 11 11 C 1.42894 * 116.99944 * 0.02562 * 10 9 8 12 12 C 1.39448 * 118.37959 * 359.73069 * 9 8 7 13 13 N 1.31953 * 119.08898 * 359.97438 * 12 9 8 14 14 C 1.46502 * 120.00367 * 266.57565 * 3 2 1 15 15 H 1.09001 * 110.88264 * 11.38363 * 14 3 2 16 16 C 1.55154 * 111.00530 * 247.50265 * 14 3 2 17 17 C 1.54325 * 102.94311 * 277.42573 * 16 14 3 18 18 N 1.47022 * 107.26858 * 337.80568 * 17 16 14 19 19 C 1.36944 * 125.64624 * 178.98588 * 18 17 16 20 20 H 1.07997 * 119.99312 * 179.97438 * 19 18 17 21 21 C 1.38808 * 120.00215 * 359.97438 * 19 18 17 22 22 N 1.31625 * 119.99888 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00187 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47234 * 89.99782 * 23 21 19 25 25 H 1.48500 * 109.46946 * 210.00192 * 23 21 19 26 26 H 1.48502 * 109.46846 * 329.99679 * 23 21 19 27 27 C 1.47425 * 108.70508 * 358.94437 * 18 17 16 28 28 H 1.09005 * 109.46872 * 299.99638 * 1 2 3 29 29 H 1.08990 * 109.46887 * 59.99598 * 1 2 3 30 30 H 1.08996 * 109.47251 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46746 * 239.99822 * 2 1 3 32 32 H 1.09007 * 109.47122 * 120.00465 * 2 1 3 33 33 H 1.07999 * 120.45303 * 180.27643 * 8 7 6 34 34 H 1.08998 * 109.47326 * 299.99795 * 11 10 9 35 35 H 1.09002 * 109.47361 * 60.00377 * 11 10 9 36 36 H 1.09002 * 109.46740 * 180.02562 * 11 10 9 37 37 H 1.08002 * 120.45350 * 180.02562 * 12 9 8 38 38 H 1.09003 * 110.72225 * 35.78703 * 16 14 3 39 39 H 1.08999 * 110.72199 * 158.88176 * 16 14 3 40 40 H 1.08998 * 109.88525 * 97.22165 * 17 16 14 41 41 H 1.08998 * 109.88164 * 218.23730 * 17 16 14 42 42 H 0.96995 * 120.00191 * 180.02562 * 22 21 19 43 43 H 1.09009 * 110.36189 * 265.28909 * 27 18 17 44 44 H 1.08999 * 110.36784 * 142.96831 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1826 2.0379 1.1654 5 8 2.6823 3.1453 1.1736 6 6 1.7531 1.4087 2.4379 7 7 1.0910 0.2613 2.3986 8 6 0.6976 -0.3310 3.5103 9 6 0.9776 0.2728 4.7357 10 8 0.5841 -0.3028 5.9002 11 6 -0.1211 -1.5419 5.8056 12 6 1.6712 1.4826 4.7354 13 7 2.0375 2.0117 3.5835 14 6 2.3341 2.0465 -1.2664 15 1 1.9685 1.4648 -2.1127 16 6 3.8578 2.3118 -1.3906 17 6 4.0476 3.6177 -0.5905 18 7 2.7431 4.2942 -0.5434 19 6 2.4809 5.4787 0.0918 20 1 1.4848 5.8953 0.0677 21 6 3.4953 6.1438 0.7667 22 7 4.7091 5.6357 0.7965 23 14 3.1374 7.7592 1.6338 24 1 2.7224 7.4883 3.0336 25 1 4.3599 8.6022 1.6342 26 1 2.0454 8.4713 0.9227 27 6 1.7644 3.4867 -1.2940 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 0.1623 -1.2682 3.4713 34 1 -1.0337 -1.3974 5.2274 35 1 0.5088 -2.2817 5.3115 36 1 -0.3767 -1.8918 6.8058 37 1 1.9061 1.9791 5.6653 38 1 4.4286 1.4985 -0.9424 39 1 4.1413 2.4507 -2.4339 40 1 4.3826 3.3875 0.4208 41 1 4.7799 4.2538 -1.0877 42 1 5.4179 6.1002 1.2684 43 1 1.6859 3.8440 -2.3209 44 1 0.7909 3.5191 -0.8047 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033891665.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:21 Heat of formation + Delta-G solvation = 68.373668 kcal Electronic energy + Delta-G solvation = -28833.577156 eV Core-core repulsion = 24983.344608 eV Total energy + Delta-G solvation = -3850.232548 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.53120 -41.06148 -39.57291 -37.60910 -36.81500 -34.88767 -34.00818 -32.12986 -31.34328 -30.41621 -29.01012 -28.45399 -26.45526 -25.84742 -25.27250 -23.89309 -22.67957 -21.78879 -20.22956 -19.23535 -19.14392 -18.80415 -18.04346 -17.16910 -17.00544 -16.79833 -16.45168 -16.17338 -15.64040 -15.53111 -15.38381 -15.10734 -15.05784 -14.39889 -14.18857 -13.66187 -13.54391 -13.37443 -13.23480 -13.02212 -12.82202 -12.71669 -12.59747 -12.51071 -12.31638 -12.24131 -12.10315 -11.96403 -11.79717 -11.60225 -11.34668 -11.23039 -10.53363 -10.23091 -10.14072 -9.70965 -9.33579 -8.26827 -7.60632 -4.84568 -0.46713 -0.03190 1.41018 1.46533 1.51710 1.88095 1.95385 2.11709 2.61699 2.87629 2.96364 3.17820 3.33327 3.57943 3.70696 3.85265 3.96247 4.05348 4.25371 4.33966 4.34758 4.41313 4.44466 4.59216 4.73395 4.76965 4.77810 4.84864 4.89985 4.92376 4.97305 5.08824 5.18372 5.23325 5.33818 5.55785 5.63443 5.70213 5.87597 6.04107 6.09038 6.13866 6.45671 6.62787 6.95890 7.35449 7.69818 8.06624 8.69574 9.50998 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013518 B = 0.005102 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.748819 B = 5487.003416 C = 7000.226643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.114 3.886 3 N -0.593 5.593 4 C 0.511 3.489 5 O -0.432 6.432 6 C 0.226 3.774 7 N -0.434 5.434 8 C 0.058 3.942 9 C 0.056 3.944 10 O -0.308 6.308 11 C 0.006 3.994 12 C 0.097 3.903 13 N -0.475 5.475 14 C 0.149 3.851 15 H 0.140 0.860 16 C -0.145 4.145 17 C 0.204 3.796 18 N -0.584 5.584 19 C -0.199 4.199 20 H 0.059 0.941 21 C -0.061 4.061 22 N -0.943 5.943 23 Si 0.956 3.044 24 H -0.301 1.301 25 H -0.295 1.295 26 H -0.271 1.271 27 C 0.123 3.877 28 H 0.038 0.962 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.221 0.779 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.127 0.873 37 H 0.189 0.811 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.020 0.980 41 H -0.016 1.016 42 H 0.233 0.767 43 H 0.040 0.960 44 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.154 -23.906 4.268 27.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.007 4.007 3 N -0.331 5.331 4 C 0.292 3.708 5 O -0.296 6.296 6 C -0.042 4.042 7 N -0.152 5.152 8 C -0.110 4.110 9 C 0.004 3.996 10 O -0.218 6.218 11 C -0.088 4.088 12 C -0.071 4.071 13 N -0.191 5.191 14 C 0.045 3.955 15 H 0.157 0.843 16 C -0.185 4.185 17 C 0.079 3.921 18 N -0.308 5.308 19 C -0.329 4.329 20 H 0.077 0.923 21 C -0.253 4.253 22 N -0.595 5.595 23 Si 0.788 3.212 24 H -0.230 1.230 25 H -0.221 1.221 26 H -0.197 1.197 27 C -0.004 4.004 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.237 0.763 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.145 0.855 37 H 0.206 0.794 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.038 0.962 41 H 0.002 0.998 42 H 0.042 0.958 43 H 0.057 0.943 44 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -11.460 -22.592 3.727 25.605 hybrid contribution -0.182 0.919 1.729 1.967 sum -11.642 -21.674 5.456 25.200 Atomic orbital electron populations 1.21996 0.95354 1.02413 1.00304 1.21926 0.95214 0.80144 1.03409 1.47648 1.66543 1.15224 1.03647 1.18138 0.82869 0.86656 0.83158 1.91596 1.36301 1.17309 1.84422 1.23004 0.97260 0.90537 0.93419 1.68938 1.08108 1.07709 1.30415 1.24294 0.98920 1.01838 0.85963 1.21062 0.95458 0.94598 0.88485 1.86098 1.70522 1.39272 1.25917 1.23639 0.96367 0.81945 1.06799 1.23112 0.95169 0.92082 0.96776 1.68240 1.18175 1.33742 0.98933 1.22299 0.94357 0.92940 0.85900 0.84274 1.23229 0.96563 0.97795 1.00881 1.20782 0.86492 0.89160 0.95654 1.44333 1.06113 1.21768 1.58632 1.19006 0.94008 0.95491 1.24383 0.92266 1.25240 0.95974 1.01673 1.02433 1.70201 1.01001 1.39756 1.48504 0.85376 0.76533 0.80848 0.78483 1.22971 1.22130 1.19653 1.22014 0.92369 0.91042 0.94938 0.94309 0.93898 0.89667 0.89185 0.89140 0.76276 0.90576 0.90350 0.85526 0.79443 0.91472 0.89435 0.96205 0.99824 0.95758 0.94287 0.96117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.54 71.98 0.69 -2.20 16 2 C 0.11 2.66 5.64 86.38 0.49 3.15 16 3 N -0.59 -20.30 2.56 -793.00 -2.03 -22.33 16 4 C 0.51 22.49 7.16 86.92 0.62 23.11 16 5 O -0.43 -24.28 8.76 -3.71 -0.03 -24.31 16 6 C 0.23 8.55 7.40 137.56 1.02 9.57 16 7 N -0.43 -11.59 3.98 -188.80 -0.75 -12.34 16 8 C 0.06 1.09 10.31 84.97 0.88 1.97 16 9 C 0.06 1.20 6.75 22.85 0.15 1.35 16 10 O -0.31 -4.93 10.51 -90.53 -0.95 -5.89 16 11 C 0.01 0.03 9.84 113.37 1.12 1.15 16 12 C 0.10 2.85 11.28 84.97 0.96 3.81 16 13 N -0.48 -19.22 10.12 -188.80 -1.91 -21.14 16 14 C 0.15 5.10 3.76 46.38 0.17 5.28 16 15 H 0.14 3.35 7.95 -2.39 -0.02 3.33 16 16 C -0.15 -5.65 6.53 31.78 0.21 -5.45 16 17 C 0.20 11.21 4.20 86.73 0.36 11.57 16 18 N -0.58 -32.89 1.76 -691.99 -1.22 -34.11 16 19 C -0.20 -12.53 8.94 84.03 0.75 -11.77 16 20 H 0.06 3.68 7.83 -2.91 -0.02 3.66 16 21 C -0.06 -3.92 5.48 84.86 0.47 -3.45 16 22 N -0.94 -63.74 10.31 21.65 0.22 -63.52 16 23 Si 0.96 52.23 29.55 68.60 2.03 54.26 16 24 H -0.30 -16.68 7.11 99.48 0.71 -15.98 16 25 H -0.29 -15.89 7.11 99.48 0.71 -15.18 16 26 H -0.27 -13.93 7.11 99.48 0.71 -13.22 16 27 C 0.12 5.38 6.26 86.85 0.54 5.92 16 28 H 0.04 0.97 6.33 -2.38 -0.02 0.96 16 29 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.09 1.58 7.99 -2.38 -0.02 1.56 16 32 H 0.09 2.15 5.60 -2.38 -0.01 2.14 16 33 H 0.22 1.77 6.47 -2.91 -0.02 1.75 16 34 H 0.08 0.23 7.71 -2.39 -0.02 0.21 16 35 H 0.08 0.21 7.71 -2.39 -0.02 0.19 16 36 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.19 4.70 8.06 -2.91 -0.02 4.68 16 38 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 40 H 0.02 1.28 5.51 -2.39 -0.01 1.27 16 41 H -0.02 -1.01 7.50 -2.39 -0.02 -1.03 16 42 H 0.23 15.50 8.31 -92.71 -0.77 14.73 16 43 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 44 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -90.96 345.93 4.79 -86.17 By element: Atomic # 1 Polarization: -1.80 SS G_CDS: 1.01 Total: -0.79 kcal Atomic # 6 Polarization: 35.58 SS G_CDS: 8.42 Total: 44.00 kcal Atomic # 7 Polarization: -147.75 SS G_CDS: -5.69 Total: -153.44 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -0.98 Total: -30.20 kcal Atomic # 14 Polarization: 52.23 SS G_CDS: 2.03 Total: 54.26 kcal Total: -90.96 4.79 -86.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033891665.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.544 kcal (2) G-P(sol) polarization free energy of solvation -90.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds