Wall clock time and date at job start Tue Mar 31 2020 13:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47136 * 2 1 4 4 C 1.34781 * 119.99855 * 276.00056 * 3 2 1 5 5 O 1.21468 * 120.00076 * 186.12369 * 4 3 2 6 6 C 1.48466 * 119.99576 * 6.12273 * 4 3 2 7 7 C 1.39508 * 120.51227 * 175.42083 * 6 4 3 8 8 C 1.38757 * 118.38806 * 180.02562 * 7 6 4 9 9 N 1.32167 * 119.22128 * 0.02562 * 8 7 6 10 10 C 1.32396 * 120.97405 * 359.97438 * 9 8 7 11 11 O 1.35467 * 119.10914 * 179.97438 * 10 9 8 12 12 C 1.42904 * 117.00351 * 0.02562 * 11 10 9 13 13 N 1.32110 * 121.77140 * 359.72270 * 10 9 8 14 14 C 1.46494 * 120.00151 * 96.00530 * 3 2 1 15 15 H 1.09002 * 110.64606 * 10.49575 * 14 3 2 16 16 C 1.55163 * 110.71924 * 247.15878 * 14 3 2 17 17 C 1.54905 * 101.58164 * 277.13796 * 16 14 3 18 18 N 1.47415 * 104.83699 * 322.99198 * 17 16 14 19 19 C 1.36935 * 125.65167 * 204.16661 * 18 17 16 20 20 H 1.08004 * 120.00168 * 179.97438 * 19 18 17 21 21 C 1.38814 * 120.00059 * 359.95246 * 19 18 17 22 22 N 1.31619 * 119.99848 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 120.00248 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47173 * 90.00428 * 23 21 19 25 25 H 1.48504 * 109.47366 * 210.00235 * 23 21 19 26 26 H 1.48501 * 109.47223 * 330.00070 * 23 21 19 27 27 C 1.47027 * 108.70526 * 24.12353 * 18 17 16 28 28 H 1.09003 * 109.47579 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47022 * 300.00790 * 1 2 3 30 30 H 1.09009 * 109.46823 * 60.00160 * 1 2 3 31 31 H 1.08994 * 109.47244 * 239.99758 * 2 1 3 32 32 H 1.09001 * 109.46875 * 119.99542 * 2 1 3 33 33 H 1.07999 * 120.80625 * 0.02562 * 7 6 4 34 34 H 1.08003 * 120.39193 * 180.02562 * 8 7 6 35 35 H 1.08992 * 109.46954 * 59.99551 * 12 11 10 36 36 H 1.08998 * 109.46922 * 179.97438 * 12 11 10 37 37 H 1.09001 * 109.46527 * 299.99382 * 12 11 10 38 38 H 1.08999 * 110.99975 * 35.21821 * 16 14 3 39 39 H 1.09000 * 111.00312 * 159.06411 * 16 14 3 40 40 H 1.09003 * 110.36851 * 204.14971 * 17 16 14 41 41 H 1.09007 * 110.36458 * 81.83157 * 17 16 14 42 42 H 0.96996 * 120.00451 * 179.97438 * 22 21 19 43 43 H 1.08992 * 109.88608 * 239.52575 * 27 18 17 44 44 H 1.09001 * 109.88021 * 118.35547 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1279 2.0572 -1.1609 5 8 2.6360 3.1604 -1.1756 6 6 1.6276 1.4534 -2.4215 7 6 1.6484 2.1802 -3.6121 8 6 1.1695 1.5730 -4.7642 9 7 0.7116 0.3349 -4.6984 10 6 0.7050 -0.3292 -3.5531 11 8 0.2265 -1.5963 -3.5287 12 6 -0.2452 -2.1356 -4.7652 13 7 1.1569 0.2090 -2.4344 14 6 2.3876 2.0276 1.2617 15 1 2.4187 1.2992 2.0720 16 6 1.4068 3.1830 1.5943 17 6 1.9945 4.3422 0.7514 18 7 3.4556 4.1642 0.8316 19 6 4.3904 5.1500 0.6601 20 1 5.4420 4.9169 0.7396 21 6 3.9864 6.4490 0.3836 22 7 2.7049 6.7331 0.2869 23 14 5.2615 7.7937 0.1489 24 1 5.6410 7.8713 -1.2847 25 1 4.6932 9.0958 0.5816 26 1 6.4638 7.4834 0.9633 27 6 3.7432 2.7530 1.1274 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.0280 3.1910 -3.6365 34 1 1.1709 2.1057 -5.7037 35 1 0.5673 -2.1432 -5.4917 36 1 -0.5991 -3.1541 -4.6058 37 1 -1.0631 -1.5209 -5.1411 38 1 0.3940 2.9403 1.2727 39 1 1.4307 3.4219 2.6575 40 1 1.7056 5.3039 1.1753 41 1 1.6594 4.2667 -0.2832 42 1 2.4225 7.6408 0.0940 43 1 4.2991 2.6758 2.0617 44 1 4.3195 2.3136 0.3132 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033895288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:47 Heat of formation + Delta-G solvation = 79.222426 kcal Electronic energy + Delta-G solvation = -28610.117470 eV Core-core repulsion = 24760.355360 eV Total energy + Delta-G solvation = -3849.762111 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.48351 -39.87879 -38.34219 -36.29867 -35.54650 -33.74315 -32.09595 -31.43607 -29.91384 -28.89444 -27.79724 -27.12232 -25.37585 -24.39769 -23.81365 -22.92898 -21.25760 -19.97747 -19.29608 -18.26715 -17.63435 -16.72194 -16.61513 -16.40562 -15.68284 -15.61097 -15.25055 -14.65342 -14.48125 -14.27310 -13.98344 -13.87657 -13.64648 -13.26601 -12.86509 -12.54122 -12.24363 -12.08500 -11.79081 -11.54842 -11.52834 -11.45096 -11.28977 -10.97149 -10.86331 -10.74718 -10.67854 -10.45762 -9.98444 -9.93858 -9.67820 -9.50795 -9.30218 -9.10393 -8.89843 -8.47795 -7.79582 -6.48583 -5.42290 -2.77843 0.56423 0.93500 2.36435 3.09997 3.27514 3.51111 3.55548 3.57168 3.86072 3.90309 4.39414 4.53974 4.66733 4.91558 4.96752 5.01637 5.18555 5.30969 5.37277 5.44864 5.51284 5.62171 5.69134 5.74957 5.79941 5.85359 5.93244 5.96976 6.12106 6.29190 6.41912 6.46170 6.61019 6.63181 6.68946 6.79684 6.85508 6.98113 7.27123 7.76182 7.80742 7.91290 7.95322 8.09461 8.58258 8.75481 9.45613 10.07104 10.74373 11.60932 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019163 B = 0.004096 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.826633 B = 6833.465078 C = 7821.202158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.108 3.892 3 N -0.590 5.590 4 C 0.522 3.478 5 O -0.422 6.422 6 C 0.183 3.817 7 C -0.211 4.211 8 C 0.185 3.815 9 N -0.565 5.565 10 C 0.484 3.516 11 O -0.290 6.290 12 C 0.046 3.954 13 N -0.491 5.491 14 C 0.134 3.866 15 H 0.087 0.913 16 C -0.160 4.160 17 C 0.154 3.846 18 N -0.577 5.577 19 C -0.202 4.202 20 H 0.071 0.929 21 C -0.014 4.014 22 N -0.919 5.919 23 Si 0.908 3.092 24 H -0.292 1.292 25 H -0.293 1.293 26 H -0.284 1.284 27 C 0.137 3.863 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.107 0.893 32 H 0.063 0.937 33 H 0.165 0.835 34 H 0.178 0.822 35 H 0.061 0.939 36 H 0.102 0.898 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.094 0.906 41 H 0.044 0.956 42 H 0.247 0.753 43 H 0.023 0.977 44 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.342 -17.418 -7.522 20.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 N -0.325 5.325 4 C 0.305 3.695 5 O -0.289 6.289 6 C 0.035 3.965 7 C -0.234 4.234 8 C 0.019 3.981 9 N -0.295 5.295 10 C 0.182 3.818 11 O -0.191 6.191 12 C -0.050 4.050 13 N -0.220 5.220 14 C 0.031 3.969 15 H 0.105 0.895 16 C -0.199 4.199 17 C 0.030 3.970 18 N -0.302 5.302 19 C -0.331 4.331 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.569 5.569 23 Si 0.740 3.260 24 H -0.220 1.220 25 H -0.220 1.220 26 H -0.210 1.210 27 C 0.010 3.990 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.124 0.876 32 H 0.082 0.918 33 H 0.183 0.817 34 H 0.195 0.805 35 H 0.080 0.920 36 H 0.120 0.880 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.112 0.888 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.041 0.959 44 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -7.409 -17.744 -7.332 20.579 hybrid contribution 0.742 1.334 -0.586 1.635 sum -6.667 -16.410 -7.918 19.402 Atomic orbital electron populations 1.22020 0.96458 1.01187 1.01060 1.21907 0.94479 0.81955 1.03153 1.47691 1.65182 1.13957 1.05651 1.17810 0.83416 0.85805 0.82455 1.91226 1.37764 1.16215 1.83702 1.22012 0.90783 0.87874 0.95801 1.22869 1.03303 1.04238 0.93005 1.23004 0.88074 0.88360 0.98664 1.67939 1.22315 1.11042 1.28192 1.20851 0.89338 0.86314 0.85319 1.86084 1.75085 1.22492 1.35488 1.22957 0.99647 0.98439 0.83962 1.68283 1.14883 1.12347 1.26530 1.22169 0.96574 0.94403 0.83738 0.89538 1.23576 0.97385 0.97796 1.01158 1.22238 0.82924 0.95606 0.96276 1.44211 1.02444 1.01615 1.81935 1.19001 0.87720 0.87127 1.39270 0.91087 1.24671 0.96039 0.97180 1.03004 1.69833 1.12468 1.18201 1.56398 0.86153 0.80367 0.81817 0.77672 1.21999 1.21962 1.20995 1.21437 0.92970 0.87527 0.97112 0.92435 0.93565 0.92902 0.87571 0.91848 0.81721 0.80547 0.92024 0.88016 0.91998 0.92534 0.91624 0.88805 0.93935 0.94256 0.95947 0.96090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.53 37.16 0.35 -1.57 16 2 C 0.11 1.47 5.72 -4.04 -0.02 1.45 16 3 N -0.59 -10.03 2.52 -164.90 -0.41 -10.44 16 4 C 0.52 9.93 6.76 -12.04 -0.08 9.85 16 5 O -0.42 -9.90 9.78 5.39 0.05 -9.85 16 6 C 0.18 2.94 6.38 -82.65 -0.53 2.41 16 7 C -0.21 -2.98 9.71 -38.92 -0.38 -3.35 16 8 C 0.18 2.10 11.30 -17.22 -0.19 1.90 16 9 N -0.56 -7.02 9.20 -14.75 -0.14 -7.16 16 10 C 0.48 6.55 8.48 -91.36 -0.77 5.78 16 11 O -0.29 -3.43 10.56 -18.09 -0.19 -3.62 16 12 C 0.05 0.35 10.36 101.05 1.05 1.40 16 13 N -0.49 -7.21 4.42 -11.29 -0.05 -7.26 16 14 C 0.13 2.44 3.72 -66.09 -0.25 2.19 16 15 H 0.09 1.30 7.76 -51.93 -0.40 0.90 16 16 C -0.16 -3.18 6.66 -24.58 -0.16 -3.34 16 17 C 0.15 3.92 4.90 -2.54 -0.01 3.91 16 18 N -0.58 -15.39 2.30 -170.07 -0.39 -15.79 16 19 C -0.20 -5.89 10.27 -15.06 -0.15 -6.04 16 20 H 0.07 2.02 7.83 -52.48 -0.41 1.61 16 21 C -0.01 -0.41 5.49 -17.43 -0.10 -0.51 16 22 N -0.92 -27.83 10.09 55.49 0.56 -27.27 16 23 Si 0.91 23.01 29.55 -169.99 -5.02 17.98 16 24 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 25 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 26 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 27 C 0.14 3.02 6.02 -3.06 -0.02 3.00 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.77 6.37 -51.92 -0.33 0.44 16 31 H 0.11 1.50 5.50 -51.93 -0.29 1.22 16 32 H 0.06 0.75 7.78 -51.93 -0.40 0.34 16 33 H 0.17 2.40 7.74 -52.49 -0.41 1.99 16 34 H 0.18 1.32 8.06 -52.48 -0.42 0.89 16 35 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 36 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.09 2.71 5.87 -51.93 -0.30 2.41 16 41 H 0.04 1.19 5.18 -53.33 -0.28 0.92 16 42 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.02 0.49 7.40 -51.93 -0.38 0.11 16 LS Contribution 347.86 15.07 5.24 5.24 Total: -1.00 -34.14 347.86 -7.76 -41.90 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -6.14 Total: -0.81 kcal Atomic # 6 Polarization: 18.35 SS G_CDS: -1.27 Total: 17.08 kcal Atomic # 7 Polarization: -67.49 SS G_CDS: -0.43 Total: -67.92 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.14 Total: -13.47 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.14 -7.76 -41.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033895288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.121 kcal (2) G-P(sol) polarization free energy of solvation -34.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds