Wall clock time and date at job start Tue Mar 31 2020 13:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47136 * 2 1 4 4 C 1.34781 * 119.99855 * 276.00056 * 3 2 1 5 5 O 1.21468 * 120.00076 * 186.12369 * 4 3 2 6 6 C 1.48466 * 119.99576 * 6.12273 * 4 3 2 7 7 C 1.39508 * 120.51227 * 175.42083 * 6 4 3 8 8 C 1.38757 * 118.38806 * 180.02562 * 7 6 4 9 9 N 1.32167 * 119.22128 * 0.02562 * 8 7 6 10 10 C 1.32396 * 120.97405 * 359.97438 * 9 8 7 11 11 O 1.35467 * 119.10914 * 179.97438 * 10 9 8 12 12 C 1.42904 * 117.00351 * 0.02562 * 11 10 9 13 13 N 1.32110 * 121.77140 * 359.72270 * 10 9 8 14 14 C 1.46494 * 120.00151 * 96.00530 * 3 2 1 15 15 H 1.09002 * 110.64606 * 10.49575 * 14 3 2 16 16 C 1.55163 * 110.71924 * 247.15878 * 14 3 2 17 17 C 1.54905 * 101.58164 * 277.13796 * 16 14 3 18 18 N 1.47415 * 104.83699 * 322.99198 * 17 16 14 19 19 C 1.36935 * 125.65167 * 204.16661 * 18 17 16 20 20 H 1.08004 * 120.00168 * 179.97438 * 19 18 17 21 21 C 1.38814 * 120.00059 * 359.95246 * 19 18 17 22 22 N 1.31619 * 119.99848 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 120.00248 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47173 * 90.00428 * 23 21 19 25 25 H 1.48504 * 109.47366 * 210.00235 * 23 21 19 26 26 H 1.48501 * 109.47223 * 330.00070 * 23 21 19 27 27 C 1.47027 * 108.70526 * 24.12353 * 18 17 16 28 28 H 1.09003 * 109.47579 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47022 * 300.00790 * 1 2 3 30 30 H 1.09009 * 109.46823 * 60.00160 * 1 2 3 31 31 H 1.08994 * 109.47244 * 239.99758 * 2 1 3 32 32 H 1.09001 * 109.46875 * 119.99542 * 2 1 3 33 33 H 1.07999 * 120.80625 * 0.02562 * 7 6 4 34 34 H 1.08003 * 120.39193 * 180.02562 * 8 7 6 35 35 H 1.08992 * 109.46954 * 59.99551 * 12 11 10 36 36 H 1.08998 * 109.46922 * 179.97438 * 12 11 10 37 37 H 1.09001 * 109.46527 * 299.99382 * 12 11 10 38 38 H 1.08999 * 110.99975 * 35.21821 * 16 14 3 39 39 H 1.09000 * 111.00312 * 159.06411 * 16 14 3 40 40 H 1.09003 * 110.36851 * 204.14971 * 17 16 14 41 41 H 1.09007 * 110.36458 * 81.83157 * 17 16 14 42 42 H 0.96996 * 120.00451 * 179.97438 * 22 21 19 43 43 H 1.08992 * 109.88608 * 239.52575 * 27 18 17 44 44 H 1.09001 * 109.88021 * 118.35547 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1279 2.0572 -1.1609 5 8 2.6360 3.1604 -1.1756 6 6 1.6276 1.4534 -2.4215 7 6 1.6484 2.1802 -3.6121 8 6 1.1695 1.5730 -4.7642 9 7 0.7116 0.3349 -4.6984 10 6 0.7050 -0.3292 -3.5531 11 8 0.2265 -1.5963 -3.5287 12 6 -0.2452 -2.1356 -4.7652 13 7 1.1569 0.2090 -2.4344 14 6 2.3876 2.0276 1.2617 15 1 2.4187 1.2992 2.0720 16 6 1.4068 3.1830 1.5943 17 6 1.9945 4.3422 0.7514 18 7 3.4556 4.1642 0.8316 19 6 4.3904 5.1500 0.6601 20 1 5.4420 4.9169 0.7396 21 6 3.9864 6.4490 0.3836 22 7 2.7049 6.7331 0.2869 23 14 5.2615 7.7937 0.1489 24 1 5.6410 7.8713 -1.2847 25 1 4.6932 9.0958 0.5816 26 1 6.4638 7.4834 0.9633 27 6 3.7432 2.7530 1.1274 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.0280 3.1910 -3.6365 34 1 1.1709 2.1057 -5.7037 35 1 0.5673 -2.1432 -5.4917 36 1 -0.5991 -3.1541 -4.6058 37 1 -1.0631 -1.5209 -5.1411 38 1 0.3940 2.9403 1.2727 39 1 1.4307 3.4219 2.6575 40 1 1.7056 5.3039 1.1753 41 1 1.6594 4.2667 -0.2832 42 1 2.4225 7.6408 0.0940 43 1 4.2991 2.6758 2.0617 44 1 4.3195 2.3136 0.3132 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033895288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:46 Heat of formation + Delta-G solvation = 55.679227 kcal Electronic energy + Delta-G solvation = -28611.138380 eV Core-core repulsion = 24760.355360 eV Total energy + Delta-G solvation = -3850.783021 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.59137 -41.27509 -39.32257 -37.95976 -36.95685 -35.02529 -33.93801 -32.51577 -31.41173 -30.62523 -28.94564 -28.39948 -26.74793 -26.17617 -24.96633 -24.06184 -22.60493 -21.95436 -20.60354 -19.31779 -18.95964 -18.59852 -17.78102 -17.50762 -17.03166 -16.92902 -16.66326 -16.41607 -15.65028 -15.58343 -15.47849 -15.10627 -14.93167 -14.38000 -14.33166 -14.00321 -13.78974 -13.35910 -13.30286 -12.90781 -12.88004 -12.78902 -12.64133 -12.45909 -12.31218 -12.23606 -12.04794 -11.97674 -11.85773 -11.63912 -11.38183 -11.29743 -10.99609 -10.56239 -10.14682 -10.01447 -9.38510 -8.58021 -7.61225 -4.99838 -0.58586 -0.08406 1.42104 1.45871 1.48848 1.56741 1.79953 1.98270 2.57522 2.72359 2.87608 3.27201 3.45323 3.52729 3.84775 3.86916 3.97286 4.11769 4.21454 4.24549 4.37628 4.42862 4.43680 4.60433 4.62552 4.71185 4.74615 4.77996 4.84014 4.94777 4.99092 5.07314 5.11165 5.19999 5.28110 5.43708 5.53541 5.58070 5.83120 5.92551 6.03019 6.05003 6.45901 6.48772 6.82288 7.24736 7.32281 7.97766 8.62979 9.39726 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019163 B = 0.004096 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.826633 B = 6833.465078 C = 7821.202158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.107 3.893 3 N -0.585 5.585 4 C 0.521 3.479 5 O -0.480 6.480 6 C 0.165 3.835 7 C -0.221 4.221 8 C 0.204 3.796 9 N -0.558 5.558 10 C 0.479 3.521 11 O -0.298 6.298 12 C 0.039 3.961 13 N -0.494 5.494 14 C 0.146 3.854 15 H 0.134 0.866 16 C -0.144 4.144 17 C 0.160 3.840 18 N -0.596 5.596 19 C -0.219 4.219 20 H 0.069 0.931 21 C -0.070 4.070 22 N -0.946 5.946 23 Si 0.973 3.027 24 H -0.293 1.293 25 H -0.294 1.294 26 H -0.271 1.271 27 C 0.134 3.866 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.031 0.969 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.152 0.848 34 H 0.221 0.779 35 H 0.064 0.936 36 H 0.133 0.867 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.052 0.948 41 H 0.017 0.983 42 H 0.239 0.761 43 H 0.034 0.966 44 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.931 -20.165 -7.953 23.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.015 4.015 3 N -0.318 5.318 4 C 0.306 3.694 5 O -0.352 6.352 6 C 0.018 3.982 7 C -0.245 4.245 8 C 0.038 3.962 9 N -0.288 5.288 10 C 0.177 3.823 11 O -0.199 6.199 12 C -0.055 4.055 13 N -0.223 5.223 14 C 0.043 3.957 15 H 0.152 0.848 16 C -0.184 4.184 17 C 0.035 3.965 18 N -0.321 5.321 19 C -0.349 4.349 20 H 0.087 0.913 21 C -0.262 4.262 22 N -0.597 5.597 23 Si 0.802 3.198 24 H -0.221 1.221 25 H -0.220 1.220 26 H -0.196 1.196 27 C 0.008 3.992 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.170 0.830 34 H 0.237 0.763 35 H 0.083 0.917 36 H 0.150 0.850 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.070 0.930 41 H 0.034 0.966 42 H 0.049 0.951 43 H 0.051 0.949 44 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -8.015 -20.586 -7.745 23.410 hybrid contribution 0.871 1.996 -0.598 2.259 sum -7.143 -18.590 -8.343 21.592 Atomic orbital electron populations 1.21925 0.95633 1.02203 1.00039 1.22117 0.95020 0.79865 1.04448 1.47868 1.64150 1.15049 1.04774 1.18296 0.82086 0.85212 0.83796 1.91210 1.40534 1.18610 1.84803 1.21607 0.92537 0.88968 0.95086 1.22913 1.04022 1.03894 0.93634 1.23635 0.85623 0.87830 0.99116 1.68092 1.21945 1.11155 1.27587 1.21079 0.88990 0.87059 0.85212 1.86097 1.74738 1.21420 1.37648 1.23284 0.99720 0.99796 0.82726 1.68182 1.15223 1.11575 1.27338 1.22144 0.93374 0.94703 0.85505 0.84837 1.23373 0.98076 0.96252 1.00682 1.21911 0.83010 0.95882 0.95697 1.44401 1.02557 1.03088 1.82018 1.19325 0.88323 0.88258 1.38952 0.91305 1.25465 0.97943 0.99309 1.03507 1.70126 1.14104 1.17918 1.57546 0.85145 0.78453 0.78820 0.77349 1.22104 1.22019 1.19615 1.21575 0.95366 0.85712 0.96566 0.90339 0.93431 0.95018 0.87915 0.88931 0.82990 0.76264 0.91730 0.84953 0.91764 0.91179 0.90465 0.93012 0.96578 0.95093 0.94851 0.97803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.53 71.98 0.69 -2.56 16 2 C 0.11 2.63 5.72 86.38 0.49 3.13 16 3 N -0.58 -19.26 2.52 -793.93 -2.00 -21.26 16 4 C 0.52 20.27 6.76 86.97 0.59 20.86 16 5 O -0.48 -23.74 9.78 -3.61 -0.04 -23.77 16 6 C 0.16 5.32 6.38 41.99 0.27 5.59 16 7 C -0.22 -6.28 9.71 22.70 0.22 -6.06 16 8 C 0.20 4.26 11.30 84.77 0.96 5.22 16 9 N -0.56 -12.62 9.20 -313.48 -2.88 -15.51 16 10 C 0.48 12.09 8.48 180.61 1.53 13.62 16 11 O -0.30 -6.32 10.56 -87.65 -0.93 -7.25 16 12 C 0.04 0.50 10.36 113.37 1.17 1.67 16 13 N -0.49 -13.95 4.42 -302.68 -1.34 -15.29 16 14 C 0.15 5.07 3.72 46.19 0.17 5.24 16 15 H 0.13 3.45 7.76 -2.39 -0.02 3.43 16 16 C -0.14 -5.67 6.66 31.99 0.21 -5.46 16 17 C 0.16 8.48 4.90 86.86 0.43 8.91 16 18 N -0.60 -32.87 2.30 -691.99 -1.59 -34.46 16 19 C -0.22 -13.21 10.27 84.03 0.86 -12.34 16 20 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 21 C -0.07 -4.27 5.49 84.86 0.47 -3.80 16 22 N -0.95 -60.08 10.09 21.65 0.22 -59.86 16 23 Si 0.97 48.82 29.55 68.60 2.03 50.84 16 24 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 25 H -0.29 -14.62 7.11 99.48 0.71 -13.92 16 26 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 27 C 0.13 5.95 6.02 86.73 0.52 6.47 16 28 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.03 0.87 6.37 -2.38 -0.02 0.86 16 31 H 0.10 2.69 5.50 -2.39 -0.01 2.68 16 32 H 0.09 1.78 7.78 -2.39 -0.02 1.76 16 33 H 0.15 4.70 7.74 -2.91 -0.02 4.68 16 34 H 0.22 2.55 8.06 -2.91 -0.02 2.53 16 35 H 0.06 0.79 8.09 -2.39 -0.02 0.77 16 36 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.06 0.79 8.09 -2.39 -0.02 0.78 16 38 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 40 H 0.05 3.17 5.87 -2.39 -0.01 3.15 16 41 H 0.02 0.99 5.18 -24.69 -0.13 0.86 16 42 H 0.24 14.80 8.31 -92.71 -0.77 14.03 16 43 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.00 0.19 7.40 -2.39 -0.02 0.18 16 Total: -1.00 -79.20 347.86 2.95 -76.25 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 0.90 Total: 9.82 kcal Atomic # 6 Polarization: 31.91 SS G_CDS: 8.58 Total: 40.49 kcal Atomic # 7 Polarization: -138.79 SS G_CDS: -7.59 Total: -146.38 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -0.96 Total: -31.02 kcal Atomic # 14 Polarization: 48.82 SS G_CDS: 2.03 Total: 50.84 kcal Total: -79.20 2.95 -76.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033895288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.929 kcal (2) G-P(sol) polarization free energy of solvation -79.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds