Wall clock time and date at job start Tue Mar 31 2020 13:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.46793 * 2 1 4 4 C 1.34780 * 119.99703 * 82.94907 * 3 2 1 5 5 O 1.21478 * 119.99814 * 183.46704 * 4 3 2 6 6 C 1.48461 * 119.99914 * 3.46945 * 4 3 2 7 7 C 1.39509 * 120.51534 * 173.20968 * 6 4 3 8 8 C 1.38753 * 118.38567 * 179.97438 * 7 6 4 9 9 N 1.32157 * 119.22644 * 0.03027 * 8 7 6 10 10 C 1.32398 * 120.97639 * 359.97438 * 9 8 7 11 11 O 1.35469 * 119.11454 * 180.02562 * 10 9 8 12 12 C 1.42905 * 116.99925 * 359.97438 * 11 10 9 13 13 N 1.32110 * 121.76849 * 359.97438 * 10 9 8 14 14 C 1.46498 * 120.00333 * 262.94771 * 3 2 1 15 15 H 1.08999 * 110.88508 * 356.12594 * 14 3 2 16 16 C 1.55158 * 111.00489 * 119.99840 * 14 3 2 17 17 C 1.54324 * 102.94089 * 153.57515 * 16 14 3 18 18 N 1.47018 * 107.27253 * 337.81170 * 17 16 14 19 19 C 1.36937 * 125.64960 * 178.98260 * 18 17 16 20 20 H 1.07996 * 120.00045 * 174.94547 * 19 18 17 21 21 C 1.38819 * 119.99734 * 354.94434 * 19 18 17 22 22 N 1.31620 * 119.99907 * 5.34645 * 21 19 18 23 23 Si 1.86794 * 119.99832 * 185.34503 * 21 19 18 24 24 H 1.48499 * 109.47335 * 95.00117 * 23 21 19 25 25 H 1.48501 * 109.47171 * 215.00160 * 23 21 19 26 26 H 1.48502 * 109.47473 * 335.00040 * 23 21 19 27 27 C 1.47429 * 108.70420 * 358.93963 * 18 17 16 28 28 H 1.08998 * 109.47251 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47284 * 299.99998 * 1 2 3 30 30 H 1.09000 * 109.47566 * 59.99754 * 1 2 3 31 31 H 1.09000 * 109.46814 * 240.00606 * 2 1 3 32 32 H 1.08997 * 109.47108 * 120.00040 * 2 1 3 33 33 H 1.07997 * 120.80109 * 0.02948 * 7 6 4 34 34 H 1.08008 * 120.38602 * 180.02562 * 8 7 6 35 35 H 1.08996 * 109.47066 * 179.97438 * 12 11 10 36 36 H 1.08997 * 109.47432 * 300.00701 * 12 11 10 37 37 H 1.08998 * 109.46782 * 60.00635 * 12 11 10 38 38 H 1.08992 * 110.72292 * 271.94432 * 16 14 3 39 39 H 1.09006 * 110.71605 * 35.21712 * 16 14 3 40 40 H 1.09001 * 109.87751 * 97.23039 * 17 16 14 41 41 H 1.09004 * 109.88293 * 218.38919 * 17 16 14 42 42 H 0.96998 * 119.99620 * 179.97438 * 22 21 19 43 43 H 1.08994 * 110.36242 * 265.29161 * 27 18 17 44 44 H 1.08998 * 110.36582 * 142.96920 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1077 2.0644 1.1584 5 8 2.4524 3.2292 1.1516 6 6 1.7851 1.3932 2.4428 7 6 2.0081 2.0427 3.6571 8 6 1.6902 1.3744 4.8308 9 7 1.1905 0.1529 4.7627 10 6 0.9903 -0.4374 3.5946 11 8 0.4757 -1.6902 3.5688 12 6 0.1807 -2.2965 4.8287 13 7 1.2781 0.1630 2.4535 14 6 2.4093 2.0201 -1.2591 15 1 2.3429 1.3164 -2.0888 16 6 1.5510 3.2836 -1.5317 17 6 2.4779 4.1474 -2.4128 18 7 3.8566 3.7020 -2.1637 19 6 4.9788 4.2040 -2.7669 20 1 5.9562 3.8656 -2.4561 21 6 4.8601 5.1479 -3.7779 22 7 3.6778 5.6382 -4.0848 23 14 6.3781 5.7221 -4.7025 24 1 6.5296 4.9270 -5.9476 25 1 6.2336 7.1592 -5.0475 26 1 7.5782 5.5365 -3.8477 27 6 3.8311 2.6260 -1.1561 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.4175 3.0418 3.6828 34 1 1.8492 1.8471 5.7889 35 1 -0.2248 -3.2950 4.6654 36 1 1.0932 -2.3668 5.4207 37 1 -0.5519 -1.6900 5.3611 38 1 0.6403 3.0223 -2.0703 39 1 1.3152 3.7980 -0.6000 40 1 2.2269 4.0065 -3.4641 41 1 2.3731 5.1982 -2.1422 42 1 3.5949 6.2980 -4.7910 43 1 3.9978 3.0354 -0.1598 44 1 4.5828 1.8715 -1.3878 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033895289.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:50 Heat of formation + Delta-G solvation = 49.110837 kcal Electronic energy + Delta-G solvation = -27748.179702 eV Core-core repulsion = 23897.111855 eV Total energy + Delta-G solvation = -3851.067847 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.72618 -39.98263 -38.49916 -36.79031 -35.70745 -34.03595 -32.23101 -31.70509 -30.18225 -28.97861 -27.97211 -27.25166 -25.54594 -24.48639 -23.93915 -23.14960 -21.27736 -19.98996 -19.81856 -18.52088 -17.88260 -16.89800 -16.83816 -16.66375 -15.96887 -15.69537 -15.09150 -14.81288 -14.57617 -14.50508 -14.21183 -14.02703 -13.71700 -13.49014 -13.07350 -12.72159 -12.38519 -12.19103 -11.95054 -11.74681 -11.72680 -11.66210 -11.57235 -11.25651 -10.87491 -10.85366 -10.69530 -10.53115 -10.42591 -10.03319 -9.96710 -9.62923 -9.49126 -9.34848 -9.09377 -8.50988 -8.28361 -6.68677 -5.62137 -2.94114 0.28424 0.69127 2.16011 2.75359 2.98085 3.46091 3.50884 3.53300 3.58499 3.63589 4.11261 4.28586 4.59307 4.64407 4.83567 4.89296 4.94376 5.18450 5.21246 5.29284 5.40090 5.52739 5.59300 5.61730 5.66915 5.73014 5.82377 5.90316 5.98273 6.13000 6.26388 6.34301 6.46495 6.55478 6.64256 6.69069 6.77726 6.78787 7.23184 7.53020 7.64787 7.67198 7.76929 7.92913 8.23178 8.36400 9.31760 9.92186 10.59639 11.49774 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028064 B = 0.003013 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.465862 B = 9292.084994 C = 9703.463991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.097 3.903 3 N -0.576 5.576 4 C 0.560 3.440 5 O -0.498 6.498 6 C 0.177 3.823 7 C -0.210 4.210 8 C 0.188 3.812 9 N -0.560 5.560 10 C 0.489 3.511 11 O -0.288 6.288 12 C 0.045 3.955 13 N -0.488 5.488 14 C 0.128 3.872 15 H 0.096 0.904 16 C -0.153 4.153 17 C 0.184 3.816 18 N -0.601 5.601 19 C -0.223 4.223 20 H 0.077 0.923 21 C -0.010 4.010 22 N -0.921 5.921 23 Si 0.911 3.089 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.281 1.281 27 C 0.125 3.875 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.165 0.835 34 H 0.180 0.820 35 H 0.104 0.896 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.048 0.952 41 H 0.040 0.960 42 H 0.251 0.749 43 H 0.044 0.956 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.885 -15.571 18.451 25.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 N -0.307 5.307 4 C 0.344 3.656 5 O -0.372 6.372 6 C 0.029 3.971 7 C -0.233 4.233 8 C 0.022 3.978 9 N -0.290 5.290 10 C 0.186 3.814 11 O -0.189 6.189 12 C -0.051 4.051 13 N -0.217 5.217 14 C 0.025 3.975 15 H 0.114 0.886 16 C -0.192 4.192 17 C 0.059 3.941 18 N -0.328 5.328 19 C -0.351 4.351 20 H 0.095 0.905 21 C -0.206 4.206 22 N -0.569 5.569 23 Si 0.741 3.259 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.002 4.002 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.130 0.870 33 H 0.183 0.817 34 H 0.197 0.803 35 H 0.122 0.878 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -9.113 -15.955 18.017 25.734 hybrid contribution 0.950 1.031 -0.229 1.420 sum -8.163 -14.924 17.788 24.613 Atomic orbital electron populations 1.21982 0.95840 1.01626 1.01294 1.22137 0.94908 0.81543 1.03932 1.47938 1.62094 1.14376 1.06328 1.17728 0.79564 0.85985 0.82345 1.90872 1.45722 1.14890 1.85671 1.21817 0.91325 0.88332 0.95581 1.22834 1.03850 1.04104 0.92540 1.23053 0.87955 0.87751 0.99086 1.67972 1.19268 1.13270 1.28480 1.20867 0.88888 0.86666 0.84941 1.86109 1.75982 1.23109 1.33686 1.23000 1.01562 0.97467 0.83066 1.68270 1.16516 1.09947 1.26998 1.22566 0.97223 0.94646 0.83113 0.88586 1.23242 0.98194 0.96366 1.01402 1.21079 0.81808 0.95287 0.95930 1.44323 1.03242 1.39124 1.46124 1.19056 0.85135 1.18658 1.12282 0.90536 1.24810 0.96885 0.99593 0.99271 1.69982 1.21138 1.32571 1.33204 0.86108 0.82031 0.77701 0.80013 1.21724 1.21821 1.20703 1.21879 0.92393 0.91128 0.94754 0.91994 0.92864 0.93220 0.91162 0.87022 0.81707 0.80296 0.87807 0.91877 0.91899 0.92555 0.90819 0.93413 0.94206 0.93863 0.93801 0.94797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.60 37.16 0.36 -1.42 16 2 C 0.10 1.24 5.73 -4.04 -0.02 1.22 16 3 N -0.58 -9.16 2.58 -164.55 -0.42 -9.58 16 4 C 0.56 9.24 6.89 -12.05 -0.08 9.15 16 5 O -0.50 -9.85 12.49 5.38 0.07 -9.78 16 6 C 0.18 2.38 6.53 -82.65 -0.54 1.84 16 7 C -0.21 -2.27 9.71 -38.92 -0.38 -2.64 16 8 C 0.19 1.61 11.30 -17.22 -0.19 1.41 16 9 N -0.56 -5.70 9.20 -14.75 -0.14 -5.83 16 10 C 0.49 5.63 8.48 -91.36 -0.77 4.86 16 11 O -0.29 -2.95 10.56 -18.10 -0.19 -3.14 16 12 C 0.04 0.28 10.36 101.05 1.05 1.33 16 13 N -0.49 -6.17 4.63 -11.29 -0.05 -6.22 16 14 C 0.13 2.40 3.55 -65.79 -0.23 2.16 16 15 H 0.10 1.69 7.77 -51.93 -0.40 1.29 16 16 C -0.15 -3.15 6.33 -24.90 -0.16 -3.31 16 17 C 0.18 4.75 5.38 -3.07 -0.02 4.73 16 18 N -0.60 -16.28 3.39 -170.08 -0.58 -16.85 16 19 C -0.22 -6.49 10.27 -15.06 -0.15 -6.64 16 20 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 21 C -0.01 -0.28 5.48 -17.43 -0.10 -0.38 16 22 N -0.92 -27.96 10.34 55.49 0.57 -27.38 16 23 Si 0.91 22.75 29.56 -169.99 -5.02 17.73 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 27 C 0.13 2.83 6.58 -2.53 -0.02 2.81 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.69 6.81 -51.93 -0.35 0.34 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.82 7.80 -51.93 -0.40 0.41 16 32 H 0.11 1.43 5.23 -51.99 -0.27 1.15 16 33 H 0.17 1.67 7.75 -52.49 -0.41 1.26 16 34 H 0.18 0.81 8.06 -52.48 -0.42 0.39 16 35 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 37 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.07 1.59 6.13 -51.93 -0.32 1.27 16 40 H 0.05 1.33 7.25 -51.93 -0.38 0.95 16 41 H 0.04 1.15 7.64 -51.93 -0.40 0.75 16 42 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.04 1.05 5.65 -51.93 -0.29 0.76 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 353.39 15.07 5.33 5.33 Total: -1.00 -34.37 353.39 -7.85 -42.22 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -6.15 Total: -1.61 kcal Atomic # 6 Polarization: 16.39 SS G_CDS: -1.27 Total: 15.12 kcal Atomic # 7 Polarization: -65.26 SS G_CDS: -0.62 Total: -65.87 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.12 Total: -12.92 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.37 -7.85 -42.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033895289.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.334 kcal (2) G-P(sol) polarization free energy of solvation -34.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds