Wall clock time and date at job start Tue Mar 31 2020 13:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.46991 * 2 1 4 4 C 1.34776 * 120.00005 * 270.00120 * 3 2 1 5 5 O 1.21590 * 119.99634 * 179.97438 * 4 3 2 6 6 C 1.47534 * 120.00075 * 0.02562 * 4 3 2 7 7 C 1.39806 * 120.97878 * 270.00012 * 6 4 3 8 8 C 1.50701 * 120.50856 * 359.95444 * 7 6 4 9 9 N 1.32182 * 118.97844 * 179.97438 * 7 6 4 10 10 C 1.31936 * 121.14569 * 359.97438 * 9 7 6 11 11 N 1.31734 * 122.19109 * 0.02562 * 10 9 7 12 12 C 1.32767 * 120.87435 * 359.72728 * 11 10 9 13 13 O 1.35277 * 120.61575 * 180.26577 * 12 11 10 14 14 C 1.46503 * 119.99678 * 90.00090 * 3 2 1 15 15 H 1.09001 * 110.88710 * 3.87727 * 14 3 2 16 16 C 1.55160 * 111.00158 * 240.00010 * 14 3 2 17 17 C 1.54325 * 102.94141 * 206.42382 * 16 14 3 18 18 N 1.47022 * 107.26808 * 22.19396 * 17 16 14 19 19 C 1.36943 * 125.64725 * 181.02022 * 18 17 16 20 20 H 1.08002 * 119.99788 * 180.02562 * 19 18 17 21 21 C 1.38811 * 119.99622 * 0.30349 * 19 18 17 22 22 N 1.31614 * 120.00467 * 359.72375 * 21 19 18 23 23 Si 1.86801 * 119.99700 * 179.72266 * 21 19 18 24 24 H 1.48496 * 109.47031 * 59.99836 * 23 21 19 25 25 H 1.48497 * 109.47267 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47169 * 300.00118 * 23 21 19 27 27 C 1.47427 * 108.70607 * 1.28411 * 18 17 16 28 28 H 1.09007 * 109.46988 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47555 * 299.99878 * 1 2 3 30 30 H 1.09003 * 109.47244 * 60.00184 * 1 2 3 31 31 H 1.09003 * 109.46849 * 240.00656 * 2 1 3 32 32 H 1.09000 * 109.47121 * 120.00322 * 2 1 3 33 33 H 1.08999 * 109.47063 * 90.00400 * 8 7 6 34 34 H 1.08998 * 109.47097 * 210.00195 * 8 7 6 35 35 H 1.08997 * 109.47286 * 329.99952 * 8 7 6 36 36 H 1.07997 * 118.90866 * 180.02562 * 10 9 7 37 37 H 0.96700 * 114.00258 * 270.25791 * 13 12 11 38 38 H 1.08996 * 110.71761 * 88.06342 * 16 14 3 39 39 H 1.08996 * 110.87457 * 324.85806 * 16 14 3 40 40 H 1.09000 * 109.87990 * 262.77884 * 17 16 14 41 41 H 1.08991 * 109.88062 * 141.60908 * 17 16 14 42 42 H 0.96995 * 120.00147 * 180.02562 * 22 21 19 43 43 H 1.09001 * 110.36238 * 94.47989 * 27 18 17 44 44 H 1.08998 * 110.36877 * 216.80572 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2429 2.0166 -1.1672 5 8 2.6477 3.1632 -1.1671 6 6 1.9965 1.3214 -2.4449 7 6 3.0062 0.5823 -3.0684 8 6 4.3750 0.4803 -2.4462 9 7 2.7419 -0.0253 -4.2122 10 6 1.5480 0.0556 -4.7678 11 7 0.5639 0.7390 -4.2203 12 6 0.7359 1.3777 -3.0691 13 8 -0.2799 2.0736 -2.5088 14 6 2.2625 2.0718 1.2688 15 1 2.0988 1.4024 2.1133 16 6 1.3815 3.3435 1.3883 17 6 2.2021 4.2448 2.3348 18 7 3.5994 3.7927 2.2654 19 6 4.6454 4.3216 2.9735 20 1 5.6395 3.9174 2.8512 21 6 4.4270 5.3732 3.8528 22 7 3.2156 5.8657 4.0020 23 14 5.8525 6.0895 4.8246 24 1 6.8775 6.6132 3.8864 25 1 5.3592 7.1945 5.6853 26 1 6.4541 5.0304 5.6742 27 6 3.6891 2.6801 1.3023 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 4.4087 -0.3832 -1.7819 34 1 5.1229 0.3645 -3.2306 35 1 4.5834 1.3857 -1.8763 36 1 1.3716 -0.4555 -5.7027 37 1 -0.3243 2.9983 -2.7881 38 1 0.4138 3.1022 1.8282 39 1 1.2536 3.8201 0.4165 40 1 1.8308 4.1462 3.3549 41 1 2.1319 5.2832 2.0112 42 1 3.0631 6.6007 4.6161 43 1 3.9682 3.0530 0.3169 44 1 4.4095 1.9379 1.6462 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033931373.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:08 Heat of formation + Delta-G solvation = 16.639471 kcal Electronic energy + Delta-G solvation = -28465.070405 eV Core-core repulsion = 24612.594493 eV Total energy + Delta-G solvation = -3852.475911 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.73641 -39.83701 -38.01346 -36.83863 -35.58016 -34.42036 -32.55131 -31.91921 -30.34907 -29.14561 -28.86876 -27.12742 -25.38880 -24.29151 -23.47076 -23.00442 -21.29290 -20.03113 -19.31390 -19.17489 -18.29288 -17.23219 -16.92030 -16.64541 -15.89691 -15.26340 -14.86457 -14.56583 -14.49119 -14.38254 -13.91530 -13.77672 -13.62034 -13.27925 -13.09146 -12.91181 -12.76036 -12.33582 -12.24350 -12.03109 -11.88673 -11.71707 -11.46551 -11.24837 -10.88464 -10.83010 -10.68384 -10.64739 -10.32827 -10.09177 -9.95501 -9.75373 -9.65045 -9.62142 -9.22592 -8.58869 -8.39712 -6.72223 -5.64243 -2.96948 0.32042 0.58532 2.48564 2.93237 2.96962 3.35370 3.44509 3.48632 3.49983 3.66001 3.94582 4.22753 4.56474 4.64659 4.77078 4.84669 5.01565 5.10371 5.24447 5.29917 5.41163 5.45833 5.49342 5.56728 5.62741 5.64662 5.73490 5.81289 5.88941 5.93084 6.15722 6.22828 6.47553 6.51266 6.58400 6.63410 6.71716 7.02284 7.17946 7.47510 7.62403 7.66736 7.72394 7.89089 8.19995 8.33234 9.28761 9.89262 10.55928 11.47380 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022269 B = 0.003622 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.049518 B = 7729.370640 C = 8154.963198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.107 3.893 3 N -0.588 5.588 4 C 0.572 3.428 5 O -0.503 6.503 6 C -0.239 4.239 7 C 0.224 3.776 8 C -0.117 4.117 9 N -0.526 5.526 10 C 0.329 3.671 11 N -0.542 5.542 12 C 0.397 3.603 13 O -0.468 6.468 14 C 0.130 3.870 15 H 0.094 0.906 16 C -0.151 4.151 17 C 0.185 3.815 18 N -0.601 5.601 19 C -0.225 4.225 20 H 0.076 0.924 21 C -0.009 4.009 22 N -0.923 5.923 23 Si 0.912 3.088 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.124 3.876 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.205 0.795 37 H 0.414 0.586 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.045 0.955 41 H 0.042 0.958 42 H 0.252 0.748 43 H 0.049 0.951 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.779 -14.886 -14.708 21.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.016 4.016 3 N -0.320 5.320 4 C 0.357 3.643 5 O -0.377 6.377 6 C -0.248 4.248 7 C 0.078 3.922 8 C -0.174 4.174 9 N -0.242 5.242 10 C 0.042 3.958 11 N -0.267 5.267 12 C 0.209 3.791 13 O -0.277 6.277 14 C 0.027 3.973 15 H 0.112 0.888 16 C -0.190 4.190 17 C 0.060 3.940 18 N -0.328 5.328 19 C -0.353 4.353 20 H 0.094 0.906 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.742 3.258 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 C -0.003 4.003 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.221 0.779 37 H 0.276 0.724 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -5.857 -15.001 -15.029 22.027 hybrid contribution 0.587 1.165 1.017 1.654 sum -5.270 -13.836 -14.012 20.385 Atomic orbital electron populations 1.22274 0.95439 1.01965 1.03626 1.21546 0.94981 0.82527 1.02595 1.47917 1.64462 1.13776 1.05803 1.17522 0.78349 0.85960 0.82515 1.90900 1.43936 1.16380 1.86501 1.21938 0.95406 1.06124 1.01321 1.21843 0.95620 0.86136 0.88641 1.20961 0.90389 1.04547 1.01542 1.68292 1.23208 1.21788 1.10902 1.24932 0.82639 0.90301 0.97970 1.68052 1.35695 1.12006 1.10993 1.19351 0.84047 0.89208 0.86505 1.84619 1.48322 1.28094 1.66663 1.22561 0.98367 0.93665 0.82689 0.88762 1.23208 0.97848 0.96222 1.01707 1.21061 0.82454 0.95000 0.95514 1.44307 1.05047 1.36244 1.47207 1.18997 0.87710 1.12223 1.16387 0.90588 1.24781 0.96772 0.98865 1.00065 1.69953 1.18906 1.28235 1.39935 0.86204 0.81371 0.78513 0.79697 1.21226 1.21646 1.21242 1.21967 0.92430 0.90692 0.95195 0.92022 0.91710 0.91437 0.91638 0.89821 0.88878 0.88964 0.89204 0.77911 0.72417 0.92605 0.91075 0.93694 0.93996 0.93792 0.93380 0.94965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.85 10.24 37.16 0.38 -1.47 16 2 C 0.11 1.17 5.95 -4.04 -0.02 1.15 16 3 N -0.59 -8.44 2.56 -164.75 -0.42 -8.86 16 4 C 0.57 8.80 4.66 -12.47 -0.06 8.74 16 5 O -0.50 -9.81 13.13 5.29 0.07 -9.74 16 6 C -0.24 -3.07 3.95 -104.56 -0.41 -3.48 16 7 C 0.22 2.59 6.44 -81.85 -0.53 2.06 16 8 C -0.12 -1.18 9.85 36.01 0.35 -0.82 16 9 N -0.53 -5.66 10.36 -10.52 -0.11 -5.77 16 10 C 0.33 3.13 12.27 -92.08 -1.13 2.00 16 11 N -0.54 -6.12 10.45 -14.32 -0.15 -6.27 16 12 C 0.40 4.78 7.08 -16.19 -0.11 4.67 16 13 O -0.47 -5.22 11.50 -17.52 -0.20 -5.42 16 14 C 0.13 2.30 3.57 -65.66 -0.23 2.06 16 15 H 0.09 1.55 7.86 -51.93 -0.41 1.14 16 16 C -0.15 -2.98 6.32 -24.89 -0.16 -3.14 16 17 C 0.18 4.66 5.37 -3.06 -0.02 4.64 16 18 N -0.60 -15.87 3.39 -169.94 -0.58 -16.44 16 19 C -0.22 -6.42 10.28 -15.06 -0.15 -6.58 16 20 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 21 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 22 N -0.92 -27.63 10.31 55.49 0.57 -27.06 16 23 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 C 0.12 2.67 6.57 -2.41 -0.02 2.66 16 28 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.81 5.51 -51.93 -0.29 0.52 16 31 H 0.07 0.66 6.56 -51.93 -0.34 0.32 16 32 H 0.08 0.80 7.93 -51.93 -0.41 0.39 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.07 7.18 -51.93 -0.37 0.70 16 36 H 0.20 1.12 8.06 -52.49 -0.42 0.69 16 37 H 0.41 3.14 9.06 45.56 0.41 3.56 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.07 1.47 6.26 -51.93 -0.33 1.15 16 40 H 0.04 1.22 7.37 -51.93 -0.38 0.84 16 41 H 0.04 1.19 7.51 -51.93 -0.39 0.80 16 42 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.05 1.11 5.52 -51.93 -0.29 0.82 16 44 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 354.43 15.07 5.34 5.34 Total: -1.00 -34.90 354.43 -8.00 -42.91 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -5.30 Total: 1.72 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: -2.21 Total: 12.13 kcal Atomic # 7 Polarization: -63.71 SS G_CDS: -0.68 Total: -64.40 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.13 Total: -15.15 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.90 -8.00 -42.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033931373.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.546 kcal (2) G-P(sol) polarization free energy of solvation -34.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds