Wall clock time and date at job start Tue Mar 31 2020 13:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47166 * 2 1 4 4 C 1.34776 * 119.99839 * 270.00412 * 3 2 1 5 5 O 1.21592 * 119.99763 * 185.08774 * 4 3 2 6 6 C 1.47533 * 120.00341 * 5.08435 * 4 3 2 7 7 C 1.39805 * 120.98079 * 270.00147 * 6 4 3 8 8 C 1.50699 * 120.51039 * 359.95972 * 7 6 4 9 9 N 1.32185 * 118.98207 * 179.97438 * 7 6 4 10 10 C 1.31942 * 121.13980 * 0.02562 * 9 7 6 11 11 N 1.31728 * 122.19458 * 0.02562 * 10 9 7 12 12 C 1.32774 * 120.87318 * 359.72132 * 11 10 9 13 13 O 1.35284 * 120.61447 * 180.26562 * 12 11 10 14 14 C 1.46497 * 119.99989 * 90.00022 * 3 2 1 15 15 H 1.08991 * 110.64125 * 181.81960 * 14 3 2 16 16 C 1.55154 * 110.72087 * 305.15797 * 14 3 2 17 17 C 1.54916 * 101.58446 * 82.85980 * 16 14 3 18 18 N 1.47421 * 104.82691 * 37.00973 * 17 16 14 19 19 C 1.36942 * 125.64709 * 156.14034 * 18 17 16 20 20 H 1.07996 * 120.00322 * 179.68937 * 19 18 17 21 21 C 1.38820 * 119.99656 * 359.68807 * 19 18 17 22 22 N 1.31612 * 119.99956 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 119.99866 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47382 * 89.99722 * 23 21 19 25 25 H 1.48498 * 109.47308 * 210.00043 * 23 21 19 26 26 H 1.48502 * 109.47266 * 329.99995 * 23 21 19 27 27 C 1.47016 * 108.70884 * 335.87292 * 18 17 16 28 28 H 1.08996 * 109.46997 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46949 * 299.99981 * 1 2 3 30 30 H 1.08996 * 109.47354 * 59.99929 * 1 2 3 31 31 H 1.09001 * 109.46682 * 240.00324 * 2 1 3 32 32 H 1.08996 * 109.47354 * 120.00071 * 2 1 3 33 33 H 1.09002 * 109.47655 * 89.99442 * 8 7 6 34 34 H 1.09005 * 109.47177 * 210.00199 * 8 7 6 35 35 H 1.09004 * 109.46650 * 329.99554 * 8 7 6 36 36 H 1.07998 * 118.90481 * 179.97438 * 10 9 7 37 37 H 0.96701 * 113.99826 * 270.26165 * 13 12 11 38 38 H 1.09002 * 111.00500 * 200.93624 * 16 14 3 39 39 H 1.09002 * 111.00668 * 324.78789 * 16 14 3 40 40 H 1.08994 * 110.36081 * 278.17150 * 17 16 14 41 41 H 1.08999 * 110.36627 * 155.84698 * 17 16 14 42 42 H 0.97006 * 119.99858 * 180.02562 * 22 21 19 43 43 H 1.08997 * 109.88476 * 120.47814 * 27 18 17 44 44 H 1.09005 * 109.88513 * 241.49004 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2429 2.0166 -1.1672 5 8 2.7351 3.1284 -1.1693 6 6 1.8917 1.3630 -2.4424 7 6 2.8152 0.5595 -3.1176 8 6 4.1965 0.3433 -2.5551 9 7 2.4584 -0.0075 -4.2571 10 6 1.2527 0.1739 -4.7613 11 7 0.3476 0.9221 -4.1644 12 6 0.6153 1.5269 -3.0131 13 8 -0.3200 2.2898 -2.4019 14 6 2.2625 2.0718 1.2687 15 1 2.5903 3.0961 1.0917 16 6 0.9942 2.0438 2.1619 17 6 1.1101 0.6476 2.8230 18 7 2.5530 0.4615 3.0611 19 6 3.1065 -0.3652 4.0021 20 1 4.1802 -0.4354 4.0948 21 6 2.2874 -1.1131 4.8369 22 7 0.9789 -1.0279 4.7236 23 14 3.0423 -2.2403 6.1209 24 1 3.2304 -1.4904 7.3888 25 1 2.1394 -3.3951 6.3581 26 1 4.3574 -2.7314 5.6367 27 6 3.2995 1.3055 2.1168 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 4.1911 -0.5309 -1.9040 34 1 4.9006 0.1838 -3.3718 35 1 4.4970 1.2209 -1.9826 36 1 0.9996 -0.3063 -5.6949 37 1 -0.3038 3.2196 -2.6672 38 1 1.0265 2.8348 2.9113 39 1 0.0895 2.1163 1.5583 40 1 0.7341 -0.1230 2.1501 41 1 0.5643 0.6280 3.7663 42 1 0.4065 -1.5503 5.3072 43 1 3.9247 2.0108 2.6642 44 1 3.9203 0.6822 1.4732 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033931374.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:11 Heat of formation + Delta-G solvation = 20.632532 kcal Electronic energy + Delta-G solvation = -28775.923192 eV Core-core repulsion = 24923.620433 eV Total energy + Delta-G solvation = -3852.302759 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.68789 -39.83288 -37.99040 -37.58512 -34.89735 -34.33962 -32.53836 -31.79523 -30.58491 -29.34669 -28.87866 -27.07710 -25.37539 -24.50601 -23.23028 -22.85465 -21.20350 -20.23465 -19.15745 -18.89144 -18.26147 -17.54091 -17.08431 -16.49874 -16.25042 -15.35292 -14.77089 -14.63702 -14.51819 -14.34857 -13.82609 -13.67675 -13.54154 -13.10871 -12.97576 -12.85155 -12.60293 -12.30664 -12.20656 -12.01577 -11.68010 -11.63083 -11.38093 -11.09416 -10.95118 -10.89911 -10.60314 -10.48858 -10.33419 -10.16665 -9.94285 -9.81185 -9.62784 -9.57612 -9.50280 -8.69594 -8.41191 -6.89300 -5.71155 -3.13168 0.37305 0.64038 2.44245 2.99429 3.04657 3.36232 3.40301 3.42002 3.43268 3.70749 3.99195 4.31714 4.44393 4.69653 4.86506 5.05232 5.19159 5.33101 5.35058 5.38778 5.43483 5.43706 5.60175 5.65874 5.66062 5.77343 5.85632 5.96731 6.05810 6.09172 6.25746 6.35491 6.44728 6.54444 6.55921 6.64575 6.68603 6.93110 7.05899 7.44080 7.54886 7.57870 7.71862 7.79819 8.14725 8.30216 9.15982 9.76521 10.40457 11.32164 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019897 B = 0.003896 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.889854 B = 7185.730709 C = 7332.176118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.098 3.902 3 N -0.571 5.571 4 C 0.576 3.424 5 O -0.541 6.541 6 C -0.237 4.237 7 C 0.224 3.776 8 C -0.117 4.117 9 N -0.525 5.525 10 C 0.330 3.670 11 N -0.542 5.542 12 C 0.398 3.602 13 O -0.466 6.466 14 C 0.126 3.874 15 H 0.101 0.899 16 C -0.158 4.158 17 C 0.138 3.862 18 N -0.602 5.602 19 C -0.224 4.224 20 H 0.077 0.923 21 C -0.008 4.008 22 N -0.920 5.920 23 Si 0.913 3.087 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.128 3.872 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.114 0.886 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.205 0.795 37 H 0.411 0.589 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.031 0.969 41 H 0.105 0.895 42 H 0.252 0.748 43 H 0.034 0.966 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.241 4.000 -16.380 16.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.024 4.024 3 N -0.301 5.301 4 C 0.361 3.639 5 O -0.419 6.419 6 C -0.246 4.246 7 C 0.078 3.922 8 C -0.174 4.174 9 N -0.241 5.241 10 C 0.043 3.957 11 N -0.267 5.267 12 C 0.211 3.789 13 O -0.274 6.274 14 C 0.023 3.977 15 H 0.119 0.881 16 C -0.197 4.197 17 C 0.014 3.986 18 N -0.329 5.329 19 C -0.352 4.352 20 H 0.095 0.905 21 C -0.204 4.204 22 N -0.569 5.569 23 Si 0.744 3.256 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.208 1.208 27 C 0.001 3.999 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.132 0.868 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.221 0.779 37 H 0.272 0.728 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.049 0.951 41 H 0.123 0.877 42 H 0.063 0.937 43 H 0.052 0.948 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -0.460 3.536 -16.694 17.071 hybrid contribution 0.394 0.100 1.113 1.185 sum -0.066 3.636 -15.581 16.000 Atomic orbital electron populations 1.22445 0.95443 1.02344 1.03171 1.21820 0.95096 0.81780 1.03725 1.47888 1.62900 1.14307 1.05040 1.17575 0.78319 0.85113 0.82895 1.90792 1.44551 1.19474 1.87061 1.21807 0.95778 1.06150 1.00868 1.21825 0.95889 0.86180 0.88285 1.20959 0.90035 1.04310 1.02101 1.68291 1.20127 1.23255 1.12475 1.24934 0.83453 0.89477 0.97878 1.68048 1.36730 1.12233 1.09689 1.19313 0.83964 0.89257 0.86382 1.84674 1.54009 1.24691 1.64046 1.22219 0.97394 0.96368 0.81763 0.88125 1.23448 0.95860 1.02171 0.98240 1.22296 0.86069 0.89326 1.00917 1.44535 1.01494 1.49056 1.37823 1.19060 0.91492 1.16053 1.08606 0.90518 1.24757 0.95485 1.00325 0.99805 1.69790 1.01813 1.44320 1.40963 0.86098 0.77904 0.80046 0.81583 1.21610 1.21687 1.20775 1.21626 0.93412 0.93434 0.91443 0.92028 0.90130 0.92792 0.92509 0.86817 0.88607 0.88983 0.89522 0.77873 0.72764 0.90986 0.91494 0.95097 0.87722 0.93720 0.94836 0.95555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.74 9.07 37.16 0.34 -2.40 16 2 C 0.10 1.58 4.97 -4.04 -0.02 1.56 16 3 N -0.57 -9.23 2.45 -165.25 -0.41 -9.63 16 4 C 0.58 9.05 5.36 -12.47 -0.07 8.98 16 5 O -0.54 -9.73 16.49 5.28 0.09 -9.64 16 6 C -0.24 -3.25 4.05 -104.56 -0.42 -3.68 16 7 C 0.22 2.81 6.26 -81.85 -0.51 2.30 16 8 C -0.12 -1.26 9.85 36.01 0.35 -0.91 16 9 N -0.53 -6.16 10.36 -10.52 -0.11 -6.27 16 10 C 0.33 3.44 12.27 -92.08 -1.13 2.31 16 11 N -0.54 -6.60 10.45 -14.32 -0.15 -6.75 16 12 C 0.40 5.16 6.80 -16.19 -0.11 5.05 16 13 O -0.47 -5.51 11.90 -17.55 -0.21 -5.72 16 14 C 0.13 2.22 3.58 -66.10 -0.24 1.98 16 15 H 0.10 1.76 7.01 -51.93 -0.36 1.40 16 16 C -0.16 -2.89 6.09 -24.58 -0.15 -3.04 16 17 C 0.14 3.08 4.65 -2.53 -0.01 3.07 16 18 N -0.60 -14.35 2.97 -170.07 -0.51 -14.86 16 19 C -0.22 -5.92 10.27 -15.05 -0.15 -6.07 16 20 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 21 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 22 N -0.92 -25.53 10.09 55.49 0.56 -24.97 16 23 Si 0.91 21.37 29.55 -169.99 -5.02 16.34 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 27 C 0.13 2.56 6.25 -3.06 -0.02 2.54 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 1.35 4.34 -51.92 -0.23 1.13 16 30 H 0.05 0.82 5.60 -51.93 -0.29 0.53 16 31 H 0.06 0.84 6.53 -51.93 -0.34 0.50 16 32 H 0.11 2.18 5.19 -51.93 -0.27 1.91 16 33 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.09 1.02 7.18 -51.93 -0.37 0.65 16 36 H 0.20 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.41 3.05 9.06 45.56 0.41 3.46 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.07 1.14 6.45 -51.93 -0.33 0.81 16 40 H 0.03 0.70 4.03 -51.93 -0.21 0.49 16 41 H 0.11 2.72 5.87 -51.93 -0.30 2.41 16 42 H 0.25 6.85 8.31 -40.82 -0.34 6.52 16 43 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.03 0.53 8.05 -51.93 -0.42 0.11 16 LS Contribution 344.73 15.07 5.19 5.19 Total: -1.00 -31.32 344.73 -7.59 -38.92 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -4.80 Total: 6.00 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: -2.24 Total: 11.38 kcal Atomic # 7 Polarization: -61.87 SS G_CDS: -0.61 Total: -62.48 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.12 Total: -15.36 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.32 -7.59 -38.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033931374.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.551 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds