Wall clock time and date at job start Tue Mar 31 2020 13:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46494 * 109.47521 * 2 1 4 4 C 1.34780 * 120.00183 * 82.31028 * 3 2 1 5 5 O 1.21609 * 120.00474 * 182.57286 * 4 3 2 6 6 C 1.47294 * 119.99682 * 2.57166 * 4 3 2 7 7 C 1.37932 * 125.89911 * 168.94384 * 6 4 3 8 8 C 1.39449 * 107.45880 * 179.76007 * 7 6 4 9 9 C 1.37932 * 107.46354 * 0.24610 * 8 7 6 10 10 C 1.47290 * 125.90061 * 179.97438 * 9 8 7 11 11 N 1.34779 * 120.00157 * 180.02562 * 10 9 8 12 12 O 1.21618 * 120.00020 * 0.02562 * 10 9 8 13 13 N 1.36749 * 108.19712 * 359.97438 * 9 8 7 14 14 H 0.97000 * 125.66027 * 179.97438 * 13 9 8 15 15 C 1.46500 * 120.00310 * 262.30827 * 3 2 1 16 16 H 1.09004 * 110.88469 * 356.11949 * 15 3 2 17 17 C 1.55156 * 111.00569 * 119.99685 * 15 3 2 18 18 C 1.54328 * 102.94282 * 153.57773 * 17 15 3 19 19 N 1.47024 * 107.26824 * 337.81126 * 18 17 15 20 20 C 1.36939 * 125.64412 * 178.98686 * 19 18 17 21 21 H 1.08001 * 119.99830 * 174.94068 * 20 19 18 22 22 C 1.38810 * 120.00035 * 354.93847 * 20 19 18 23 23 N 1.31616 * 120.00056 * 5.41374 * 22 20 19 24 24 Si 1.86804 * 119.99751 * 185.41561 * 22 20 19 25 25 H 1.48503 * 109.47100 * 94.99547 * 24 22 20 26 26 H 1.48499 * 109.46787 * 214.99391 * 24 22 20 27 27 H 1.48494 * 109.46917 * 334.99511 * 24 22 20 28 28 C 1.47418 * 108.70572 * 358.93651 * 19 18 17 29 29 H 1.09002 * 109.46986 * 59.99562 * 1 2 3 30 30 H 1.08992 * 109.47914 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46900 * 300.00328 * 1 2 3 32 32 H 1.08998 * 109.46900 * 239.99672 * 2 1 3 33 33 H 1.09002 * 109.46986 * 120.00438 * 2 1 3 34 34 H 1.07994 * 126.26928 * 0.02574 * 7 6 4 35 35 H 1.08000 * 126.26520 * 180.26444 * 8 7 6 36 36 H 0.96995 * 119.99585 * 359.97438 * 11 10 9 37 37 H 0.96997 * 119.99621 * 180.02562 * 11 10 9 38 38 H 1.08995 * 110.72103 * 271.94647 * 17 15 3 39 39 H 1.09001 * 110.71699 * 35.21971 * 17 15 3 40 40 H 1.08998 * 109.88131 * 97.22704 * 18 17 15 41 41 H 1.08996 * 109.88271 * 218.39149 * 18 17 15 42 42 H 0.97001 * 120.00009 * 180.02562 * 23 22 20 43 43 H 1.08998 * 110.37167 * 265.29136 * 28 19 18 44 44 H 1.09001 * 110.36828 * 142.96865 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.0958 2.0686 1.1567 5 8 2.4567 3.2299 1.1510 6 6 1.7433 1.4132 2.4278 7 6 1.9774 1.9178 3.6901 8 6 1.4869 0.9905 4.6089 9 6 0.9668 -0.0671 3.8922 10 6 0.3433 -1.2734 4.4625 11 7 -0.1272 -2.2383 3.6476 12 8 0.2530 -1.3988 5.6689 13 7 1.1301 0.1981 2.5606 14 1 0.8542 -0.3787 1.8312 15 6 2.4227 2.0152 -1.2573 16 1 2.3651 1.3083 -2.0851 17 6 1.5676 3.2777 -1.5436 18 6 2.5037 4.1382 -2.4182 19 7 3.8798 3.6935 -2.1529 20 6 5.0083 4.1933 -2.7462 21 1 5.9823 3.8560 -2.4238 22 6 4.9003 5.1333 -3.7618 23 7 3.7216 5.6235 -4.0823 24 14 6.4280 5.7025 -4.6739 25 1 6.5908 4.9023 -5.9143 26 1 6.2880 7.1383 -5.0259 27 1 7.6193 5.5192 -3.8066 28 6 3.8435 2.6215 -1.1417 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0275 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.4496 2.8604 3.9238 35 1 1.5099 1.0835 5.6846 36 1 -0.0555 -2.1381 2.6855 37 1 -0.5382 -3.0326 4.0233 38 1 0.6625 3.0145 -2.0909 39 1 1.3221 3.7956 -0.6164 40 1 2.2639 3.9934 -3.4716 41 1 2.3963 5.1899 -2.1527 42 1 3.6461 6.2801 -4.7923 43 1 3.9998 3.0345 -0.1451 44 1 4.5975 1.8660 -1.3625 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033951981.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:26 Heat of formation + Delta-G solvation = 9.737799 kcal Electronic energy + Delta-G solvation = -27632.328940 eV Core-core repulsion = 23779.553750 eV Total energy + Delta-G solvation = -3852.775190 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.97140 -41.07661 -39.89351 -38.42576 -37.21467 -34.93544 -34.45749 -32.60755 -31.43667 -31.08705 -30.55421 -28.72636 -26.60192 -25.39320 -24.23362 -23.11396 -22.08535 -21.99854 -21.29024 -20.83859 -19.21662 -18.91233 -18.21548 -17.89693 -17.11093 -16.74745 -16.57775 -16.34271 -15.96146 -15.73078 -15.56599 -15.19129 -14.78537 -14.67022 -14.49613 -14.19105 -14.00233 -13.79098 -13.75138 -13.59150 -13.47882 -13.03424 -12.84186 -12.78068 -12.37311 -12.28658 -12.10230 -12.01684 -11.85086 -11.63652 -11.53075 -10.86602 -10.79202 -10.69977 -10.17855 -9.85963 -9.41606 -8.86002 -7.85581 -5.20965 -0.09968 1.05854 1.44988 1.47470 1.55988 1.58706 1.88315 2.18465 2.23454 2.39703 2.50285 3.27389 3.35225 3.66209 3.72716 3.82487 3.86576 3.99244 4.08946 4.13470 4.20392 4.23650 4.32952 4.53097 4.67292 4.72804 4.76505 4.78259 4.91529 5.00905 5.02863 5.08151 5.25627 5.36626 5.43430 5.59299 5.64615 5.65779 5.74137 5.77289 6.03018 6.18931 6.29017 6.31850 7.02917 7.09611 7.12203 7.76296 8.41829 9.25102 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.030087 B = 0.002877 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.408424 B = 9730.248303 C =10125.285273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.072 3.928 3 N -0.594 5.594 4 C 0.575 3.425 5 O -0.547 6.547 6 C -0.011 4.011 7 C -0.136 4.136 8 C -0.128 4.128 9 C -0.028 4.028 10 C 0.597 3.403 11 N -0.828 5.828 12 O -0.565 6.565 13 N -0.506 5.506 14 H 0.437 0.563 15 C 0.154 3.846 16 H 0.125 0.875 17 C -0.138 4.138 18 C 0.193 3.807 19 N -0.622 5.622 20 C -0.244 4.244 21 H 0.079 0.921 22 C -0.066 4.066 23 N -0.951 5.951 24 Si 0.981 3.019 25 H -0.281 1.281 26 H -0.295 1.295 27 H -0.270 1.270 28 C 0.119 3.881 29 H 0.072 0.928 30 H 0.120 0.880 31 H 0.050 0.950 32 H 0.123 0.877 33 H 0.090 0.910 34 H 0.150 0.850 35 H 0.162 0.838 36 H 0.412 0.588 37 H 0.421 0.579 38 H 0.087 0.913 39 H 0.059 0.941 40 H 0.024 0.976 41 H -0.009 1.009 42 H 0.247 0.753 43 H 0.026 0.974 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.212 -21.617 11.201 26.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.050 4.050 3 N -0.326 5.326 4 C 0.364 3.636 5 O -0.424 6.424 6 C -0.129 4.129 7 C -0.162 4.162 8 C -0.154 4.154 9 C -0.146 4.146 10 C 0.382 3.618 11 N -0.393 5.393 12 O -0.444 6.444 13 N -0.117 5.117 14 H 0.290 0.710 15 C 0.050 3.950 16 H 0.142 0.858 17 C -0.177 4.177 18 C 0.067 3.933 19 N -0.349 5.349 20 C -0.373 4.373 21 H 0.097 0.903 22 C -0.259 4.259 23 N -0.599 5.599 24 Si 0.809 3.191 25 H -0.207 1.207 26 H -0.222 1.222 27 H -0.195 1.195 28 C -0.007 4.007 29 H 0.091 0.909 30 H 0.139 0.861 31 H 0.069 0.931 32 H 0.141 0.859 33 H 0.108 0.892 34 H 0.167 0.833 35 H 0.179 0.821 36 H 0.242 0.758 37 H 0.255 0.745 38 H 0.105 0.895 39 H 0.077 0.923 40 H 0.042 0.958 41 H 0.009 0.991 42 H 0.057 0.943 43 H 0.044 0.956 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.015 -20.970 11.636 26.391 hybrid contribution 0.635 0.727 -1.177 1.523 sum -10.380 -20.243 10.459 25.038 Atomic orbital electron populations 1.22630 0.93856 1.05633 1.03520 1.22427 0.95890 0.80911 1.05788 1.47886 1.64151 1.14852 1.05710 1.17591 0.77765 0.85504 0.82728 1.90889 1.47619 1.17596 1.86314 1.20386 1.08446 0.89356 0.94742 1.21428 1.03668 1.01131 0.90002 1.21450 1.00971 0.92566 1.00400 1.20645 1.10905 0.99213 0.83788 1.17064 0.77125 0.81734 0.85853 1.43496 1.62584 1.22520 1.10708 1.90880 1.58713 1.79272 1.15488 1.43321 1.44913 1.15966 1.07469 0.71029 1.22150 0.93387 0.94359 0.85126 0.85761 1.23027 0.98285 0.96516 0.99851 1.20808 0.82929 0.93959 0.95571 1.44620 1.02985 1.40781 1.46484 1.19441 0.86052 1.19269 1.12497 0.90300 1.25691 1.00076 0.99843 1.00241 1.70202 1.23457 1.33175 1.33113 0.85023 0.78682 0.76727 0.78671 1.20733 1.22208 1.19522 1.22004 0.95726 0.90376 0.92590 0.90917 0.86111 0.93061 0.85901 0.89229 0.83271 0.82069 0.75790 0.74477 0.89480 0.92255 0.95764 0.99115 0.94336 0.95597 0.93920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.46 8.88 71.98 0.64 -0.82 16 2 C 0.07 0.83 5.68 86.38 0.49 1.32 16 3 N -0.59 -14.59 2.58 -794.14 -2.05 -16.64 16 4 C 0.58 17.46 6.87 86.62 0.60 18.06 16 5 O -0.55 -22.61 12.93 -4.06 -0.05 -22.66 16 6 C -0.01 -0.27 6.47 40.69 0.26 0.00 16 7 C -0.14 -3.34 10.62 22.49 0.24 -3.10 16 8 C -0.13 -2.70 10.60 22.49 0.24 -2.46 16 9 C -0.03 -0.48 7.04 40.69 0.29 -0.20 16 10 C 0.60 9.54 8.08 86.62 0.70 10.24 16 11 N -0.83 -4.43 8.87 -175.98 -1.56 -5.99 16 12 O -0.57 -13.83 17.71 -4.09 -0.07 -13.90 16 13 N -0.51 -7.56 4.11 -172.56 -0.71 -8.27 16 14 H 0.44 3.52 2.64 -92.71 -0.25 3.27 16 15 C 0.15 5.00 3.56 46.38 0.16 5.16 16 16 H 0.12 3.37 7.77 -2.38 -0.02 3.35 16 17 C -0.14 -5.34 6.33 31.78 0.20 -5.13 16 18 C 0.19 10.06 5.38 86.73 0.47 10.53 16 19 N -0.62 -33.78 3.39 -692.00 -2.35 -36.13 16 20 C -0.24 -14.29 10.27 84.03 0.86 -13.43 16 21 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 22 C -0.07 -3.86 5.48 84.86 0.47 -3.39 16 23 N -0.95 -58.91 10.34 21.65 0.22 -58.68 16 24 Si 0.98 46.94 29.56 68.60 2.03 48.97 16 25 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 26 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 27 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 28 C 0.12 5.19 6.58 86.86 0.57 5.76 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.12 -0.19 8.14 -2.39 -0.02 -0.20 16 31 H 0.05 0.52 6.46 -2.39 -0.02 0.51 16 32 H 0.12 0.93 7.78 -2.39 -0.02 0.91 16 33 H 0.09 0.74 5.12 -2.39 -0.01 0.73 16 34 H 0.15 3.81 8.06 -2.91 -0.02 3.78 16 35 H 0.16 3.12 8.06 -2.91 -0.02 3.09 16 36 H 0.41 -0.43 7.93 -92.71 -0.74 -1.17 16 37 H 0.42 1.06 8.93 -92.71 -0.83 0.23 16 38 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 39 H 0.06 2.51 6.16 -2.39 -0.01 2.50 16 40 H 0.02 1.36 7.26 -2.39 -0.02 1.34 16 41 H -0.01 -0.58 7.64 -2.39 -0.02 -0.59 16 42 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 43 H 0.03 1.27 5.62 -2.39 -0.01 1.26 16 44 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -86.32 350.79 0.91 -85.42 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -0.73 Total: 5.36 kcal Atomic # 6 Polarization: 16.34 SS G_CDS: 6.18 Total: 22.53 kcal Atomic # 7 Polarization: -119.27 SS G_CDS: -6.45 Total: -125.72 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -0.12 Total: -36.56 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -86.32 0.91 -85.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033951981.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.157 kcal (2) G-P(sol) polarization free energy of solvation -86.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds