Wall clock time and date at job start Tue Mar 31 2020 13:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46506 * 109.46991 * 2 1 4 4 C 1.34774 * 119.99927 * 270.06217 * 3 2 1 5 5 O 1.21614 * 119.99558 * 186.80543 * 4 3 2 6 6 C 1.47287 * 120.00160 * 6.80545 * 4 3 2 7 7 C 1.37934 * 125.89883 * 187.82850 * 6 4 3 8 8 C 1.39447 * 107.45883 * 179.97438 * 7 6 4 9 9 C 1.37922 * 107.46294 * 359.97438 * 8 7 6 10 10 C 1.47304 * 125.90026 * 179.97438 * 9 8 7 11 11 N 1.34770 * 119.99882 * 179.97438 * 10 9 8 12 12 O 1.21614 * 119.99854 * 359.97438 * 10 9 8 13 13 N 1.36754 * 125.90166 * 7.50869 * 6 4 3 14 14 H 0.97001 * 125.66246 * 0.02908 * 13 6 4 15 15 C 1.46494 * 119.99880 * 90.05972 * 3 2 1 16 16 H 1.09007 * 110.88846 * 4.03376 * 15 3 2 17 17 C 1.55157 * 111.04047 * 240.13281 * 15 3 2 18 18 C 1.54321 * 102.94042 * 277.41551 * 17 15 3 19 19 N 1.47024 * 107.27270 * 337.80218 * 18 17 15 20 20 C 1.36935 * 125.64988 * 178.90625 * 19 18 17 21 21 H 1.07997 * 119.99766 * 175.28412 * 20 19 18 22 22 C 1.38810 * 120.00177 * 355.28257 * 20 19 18 23 23 N 1.31622 * 119.99938 * 5.33502 * 22 20 19 24 24 Si 1.86801 * 120.00121 * 185.34005 * 22 20 19 25 25 H 1.48497 * 109.47325 * 94.99925 * 24 22 20 26 26 H 1.48499 * 109.46888 * 214.99780 * 24 22 20 27 27 H 1.48500 * 109.47040 * 334.99423 * 24 22 20 28 28 C 1.47420 * 108.70047 * 358.94284 * 19 18 17 29 29 H 1.08996 * 109.47144 * 299.99835 * 1 2 3 30 30 H 1.08999 * 109.46997 * 59.99599 * 1 2 3 31 31 H 1.08997 * 109.46644 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47266 * 240.00677 * 2 1 3 33 33 H 1.08992 * 109.47318 * 120.00255 * 2 1 3 34 34 H 1.08001 * 126.27234 * 359.97438 * 7 6 4 35 35 H 1.08009 * 126.26736 * 179.97438 * 8 7 6 36 36 H 0.96999 * 120.00705 * 359.97438 * 11 10 9 37 37 H 0.97010 * 120.00004 * 180.02562 * 11 10 9 38 38 H 1.09001 * 110.72125 * 159.04906 * 17 15 3 39 39 H 1.08998 * 110.72150 * 35.77320 * 17 15 3 40 40 H 1.09001 * 109.88179 * 218.38764 * 18 17 15 41 41 H 1.09001 * 109.88856 * 97.22563 * 18 17 15 42 42 H 0.97002 * 119.99790 * 179.97438 * 23 22 20 43 43 H 1.09004 * 110.36490 * 142.96321 * 28 19 18 44 44 H 1.08998 * 110.36935 * 265.28663 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2418 2.0170 -1.1672 5 8 2.7627 3.1160 -1.1710 6 6 1.8551 1.3809 -2.4381 7 6 2.1597 1.8455 -3.7006 8 6 1.6089 0.9525 -4.6192 9 6 0.9779 -0.0423 -3.9020 10 6 0.2598 -1.1953 -4.4720 11 7 -0.3156 -2.1010 -3.6565 12 8 0.1863 -1.3299 -5.6784 13 7 1.1374 0.2244 -2.5702 14 1 0.7962 -0.3159 -1.8404 15 6 2.2638 2.0714 1.2687 16 1 2.1037 1.4009 2.1132 17 6 1.3809 3.3413 1.3919 18 6 2.1799 4.3960 0.5977 19 7 3.5783 3.9439 0.5557 20 6 4.6076 4.5905 -0.0748 21 1 5.6166 4.2164 0.0161 22 6 4.3541 5.7268 -0.8307 23 7 3.1438 6.2435 -0.8566 24 14 5.7306 6.5226 -1.8112 25 1 5.6993 6.0182 -3.2075 26 1 5.5488 7.9964 -1.8131 27 1 7.0378 6.1859 -1.1923 28 6 3.6885 2.6785 1.3041 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.7219 2.7374 -3.9349 35 1 1.6660 1.0264 -5.6952 36 1 -0.2566 -1.9939 -2.6943 37 1 -0.7881 -2.8605 -4.0319 38 1 1.2785 3.6401 2.4351 39 1 0.4032 3.1768 0.9389 40 1 2.1177 5.3624 1.0981 41 1 1.7852 4.4749 -0.4153 42 1 2.9668 7.0378 -1.3846 43 1 4.3979 2.0099 0.8164 44 1 3.9933 2.8714 2.3327 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033951986.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:30 Heat of formation + Delta-G solvation = 81.505887 kcal Electronic energy + Delta-G solvation = -28861.653475 eV Core-core repulsion = 25011.990383 eV Total energy + Delta-G solvation = -3849.663093 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.66098 -39.71146 -38.78341 -36.04912 -35.79179 -34.04848 -32.42577 -31.02836 -30.12066 -29.43038 -28.85114 -27.10773 -24.53570 -24.06265 -23.21069 -21.89853 -20.80257 -19.89442 -19.86919 -19.36325 -17.87226 -17.15462 -16.91529 -16.51510 -15.68491 -15.37369 -15.13218 -14.84517 -14.53756 -14.37955 -13.98167 -13.67358 -13.58423 -13.20962 -13.05180 -12.79156 -12.47127 -12.45524 -11.98209 -11.84040 -11.79397 -11.68184 -11.47107 -10.76436 -10.72154 -10.68776 -10.49939 -10.08485 -10.04223 -9.94015 -9.71429 -9.44538 -8.94616 -8.82539 -8.50895 -8.11642 -7.86138 -6.30024 -5.42352 -2.67709 1.18568 2.44270 2.91265 3.20380 3.29043 3.30228 3.56094 3.61062 3.62585 3.91844 4.49232 4.66109 4.72752 4.73275 4.82161 5.01426 5.28309 5.33076 5.37485 5.43503 5.47147 5.51281 5.67255 5.85079 5.86814 5.99252 6.04588 6.18687 6.29850 6.42675 6.45536 6.53305 6.59133 6.63385 6.71855 6.94511 6.99627 7.16590 7.28960 7.74894 7.86365 7.90287 7.93972 8.11580 8.54838 8.99844 9.50637 10.13267 10.78609 11.70891 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015169 B = 0.004807 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.434391 B = 5823.927841 C = 7212.314788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.090 3.910 3 N -0.612 5.612 4 C 0.516 3.484 5 O -0.367 6.367 6 C 0.022 3.978 7 C -0.137 4.137 8 C -0.110 4.110 9 C -0.061 4.061 10 C 0.596 3.404 11 N -0.858 5.858 12 O -0.531 6.531 13 N -0.537 5.537 14 H 0.419 0.581 15 C 0.135 3.865 16 H 0.083 0.917 17 C -0.160 4.160 18 C 0.188 3.812 19 N -0.570 5.570 20 C -0.204 4.204 21 H 0.067 0.933 22 C 0.002 3.998 23 N -0.915 5.915 24 Si 0.897 3.103 25 H -0.292 1.292 26 H -0.296 1.296 27 H -0.286 1.286 28 C 0.127 3.873 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.157 0.843 35 H 0.150 0.850 36 H 0.394 0.606 37 H 0.407 0.593 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.027 0.973 41 H 0.070 0.930 42 H 0.245 0.755 43 H 0.036 0.964 44 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.892 -18.134 2.551 20.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.035 4.035 3 N -0.351 5.351 4 C 0.300 3.700 5 O -0.228 6.228 6 C -0.096 4.096 7 C -0.162 4.162 8 C -0.137 4.137 9 C -0.176 4.176 10 C 0.383 3.617 11 N -0.422 5.422 12 O -0.406 6.406 13 N -0.147 5.147 14 H 0.268 0.732 15 C 0.031 3.969 16 H 0.101 0.899 17 C -0.199 4.199 18 C 0.064 3.936 19 N -0.296 5.296 20 C -0.333 4.333 21 H 0.085 0.915 22 C -0.194 4.194 23 N -0.563 5.563 24 Si 0.729 3.271 25 H -0.220 1.220 26 H -0.223 1.223 27 H -0.212 1.212 28 C 0.000 4.000 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.174 0.826 35 H 0.168 0.832 36 H 0.221 0.779 37 H 0.238 0.762 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.045 0.955 41 H 0.088 0.912 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -8.544 -17.289 1.730 19.362 hybrid contribution 0.188 -0.337 0.098 0.398 sum -8.356 -17.625 1.828 19.591 Atomic orbital electron populations 1.22615 0.96708 1.02249 1.04142 1.21785 0.93708 0.84992 1.03028 1.47708 1.68943 1.12486 1.05937 1.17620 0.83502 0.87335 0.81574 1.91671 1.32919 1.14680 1.83558 1.21437 1.02011 0.89125 0.97018 1.21372 1.03784 1.01433 0.89620 1.21281 0.99221 0.93467 0.99710 1.20368 1.11967 1.01289 0.84001 1.17223 0.77473 0.80884 0.86123 1.43728 1.59425 1.29032 1.10025 1.90858 1.60265 1.75679 1.13828 1.43480 1.42984 1.21214 1.06984 0.73214 1.22325 0.97824 0.93164 0.83564 0.89873 1.23392 0.98578 0.97130 1.00799 1.21226 0.83340 0.91492 0.97543 1.44146 1.05196 1.20708 1.59534 1.18785 0.86581 1.05389 1.22506 0.91478 1.24578 0.95996 0.98608 1.00249 1.69940 1.18830 1.23142 1.44435 0.86324 0.81463 0.78372 0.80957 1.21972 1.22252 1.21170 1.21821 0.92981 0.89861 0.95377 0.90372 0.92003 0.91365 0.91077 0.89547 0.82556 0.83194 0.77906 0.76151 0.91906 0.92503 0.95525 0.91247 0.94454 0.94607 0.96003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.47 8.96 37.16 0.33 -1.14 16 2 C 0.09 0.85 5.60 -4.03 -0.02 0.83 16 3 N -0.61 -9.08 2.56 -164.98 -0.42 -9.51 16 4 C 0.52 9.66 7.11 -12.58 -0.09 9.57 16 5 O -0.37 -8.82 8.69 5.27 0.05 -8.77 16 6 C 0.02 0.37 6.60 -82.10 -0.54 -0.18 16 7 C -0.14 -2.33 10.61 -39.24 -0.42 -2.75 16 8 C -0.11 -1.65 10.60 -39.25 -0.42 -2.06 16 9 C -0.06 -0.81 7.04 -82.10 -0.58 -1.39 16 10 C 0.60 7.26 8.08 -12.58 -0.10 7.16 16 11 N -0.86 -6.07 8.87 30.40 0.27 -5.80 16 12 O -0.53 -8.38 17.71 5.27 0.09 -8.29 16 13 N -0.54 -6.51 4.18 -5.89 -0.02 -6.54 16 14 H 0.42 3.76 2.55 -40.82 -0.10 3.66 16 15 C 0.14 2.15 3.81 -65.78 -0.25 1.90 16 16 H 0.08 1.02 7.86 -51.92 -0.41 0.62 16 17 C -0.16 -2.88 6.45 -24.90 -0.16 -3.04 16 18 C 0.19 4.60 4.18 -3.06 -0.01 4.59 16 19 N -0.57 -14.47 1.78 -170.08 -0.30 -14.77 16 20 C -0.20 -5.81 9.07 -15.06 -0.14 -5.95 16 21 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 22 C 0.00 0.04 5.35 -17.43 -0.09 -0.05 16 23 N -0.92 -27.64 10.34 55.49 0.57 -27.07 16 24 Si 0.90 23.13 29.56 -169.99 -5.02 18.11 16 25 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 26 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 C 0.13 2.58 6.38 -2.53 -0.02 2.56 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.56 6.54 -51.93 -0.34 0.22 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.65 5.19 -51.93 -0.27 0.38 16 33 H 0.09 0.65 7.93 -51.93 -0.41 0.23 16 34 H 0.16 2.86 8.06 -52.49 -0.42 2.44 16 35 H 0.15 2.08 8.06 -52.48 -0.42 1.65 16 36 H 0.39 1.75 7.93 -40.82 -0.32 1.42 16 37 H 0.41 2.18 8.93 -40.82 -0.36 1.81 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.03 0.74 7.63 -51.93 -0.40 0.34 16 41 H 0.07 1.93 5.27 -51.93 -0.27 1.66 16 42 H 0.24 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 345.78 15.07 5.21 5.21 Total: -1.00 -36.31 345.78 -7.90 -44.22 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -5.82 Total: 3.15 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: -2.50 Total: 10.06 kcal Atomic # 7 Polarization: -63.78 SS G_CDS: 0.09 Total: -63.69 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: 0.14 Total: -17.06 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -36.31 -7.90 -44.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033951986.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.723 kcal (2) G-P(sol) polarization free energy of solvation -36.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds