Wall clock time and date at job start Tue Mar 31 2020 13:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46506 * 109.46991 * 2 1 4 4 C 1.34774 * 119.99927 * 270.06217 * 3 2 1 5 5 O 1.21614 * 119.99558 * 186.80543 * 4 3 2 6 6 C 1.47287 * 120.00160 * 6.80545 * 4 3 2 7 7 C 1.37934 * 125.89883 * 187.82850 * 6 4 3 8 8 C 1.39447 * 107.45883 * 179.97438 * 7 6 4 9 9 C 1.37922 * 107.46294 * 359.97438 * 8 7 6 10 10 C 1.47304 * 125.90026 * 179.97438 * 9 8 7 11 11 N 1.34770 * 119.99882 * 179.97438 * 10 9 8 12 12 O 1.21614 * 119.99854 * 359.97438 * 10 9 8 13 13 N 1.36754 * 125.90166 * 7.50869 * 6 4 3 14 14 H 0.97001 * 125.66246 * 0.02908 * 13 6 4 15 15 C 1.46494 * 119.99880 * 90.05972 * 3 2 1 16 16 H 1.09007 * 110.88846 * 4.03376 * 15 3 2 17 17 C 1.55157 * 111.04047 * 240.13281 * 15 3 2 18 18 C 1.54321 * 102.94042 * 277.41551 * 17 15 3 19 19 N 1.47024 * 107.27270 * 337.80218 * 18 17 15 20 20 C 1.36935 * 125.64988 * 178.90625 * 19 18 17 21 21 H 1.07997 * 119.99766 * 175.28412 * 20 19 18 22 22 C 1.38810 * 120.00177 * 355.28257 * 20 19 18 23 23 N 1.31622 * 119.99938 * 5.33502 * 22 20 19 24 24 Si 1.86801 * 120.00121 * 185.34005 * 22 20 19 25 25 H 1.48497 * 109.47325 * 94.99925 * 24 22 20 26 26 H 1.48499 * 109.46888 * 214.99780 * 24 22 20 27 27 H 1.48500 * 109.47040 * 334.99423 * 24 22 20 28 28 C 1.47420 * 108.70047 * 358.94284 * 19 18 17 29 29 H 1.08996 * 109.47144 * 299.99835 * 1 2 3 30 30 H 1.08999 * 109.46997 * 59.99599 * 1 2 3 31 31 H 1.08997 * 109.46644 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47266 * 240.00677 * 2 1 3 33 33 H 1.08992 * 109.47318 * 120.00255 * 2 1 3 34 34 H 1.08001 * 126.27234 * 359.97438 * 7 6 4 35 35 H 1.08009 * 126.26736 * 179.97438 * 8 7 6 36 36 H 0.96999 * 120.00705 * 359.97438 * 11 10 9 37 37 H 0.97010 * 120.00004 * 180.02562 * 11 10 9 38 38 H 1.09001 * 110.72125 * 159.04906 * 17 15 3 39 39 H 1.08998 * 110.72150 * 35.77320 * 17 15 3 40 40 H 1.09001 * 109.88179 * 218.38764 * 18 17 15 41 41 H 1.09001 * 109.88856 * 97.22563 * 18 17 15 42 42 H 0.97002 * 119.99790 * 179.97438 * 23 22 20 43 43 H 1.09004 * 110.36490 * 142.96321 * 28 19 18 44 44 H 1.08998 * 110.36935 * 265.28663 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2418 2.0170 -1.1672 5 8 2.7627 3.1160 -1.1710 6 6 1.8551 1.3809 -2.4381 7 6 2.1597 1.8455 -3.7006 8 6 1.6089 0.9525 -4.6192 9 6 0.9779 -0.0423 -3.9020 10 6 0.2598 -1.1953 -4.4720 11 7 -0.3156 -2.1010 -3.6565 12 8 0.1863 -1.3299 -5.6784 13 7 1.1374 0.2244 -2.5702 14 1 0.7962 -0.3159 -1.8404 15 6 2.2638 2.0714 1.2687 16 1 2.1037 1.4009 2.1132 17 6 1.3809 3.3413 1.3919 18 6 2.1799 4.3960 0.5977 19 7 3.5783 3.9439 0.5557 20 6 4.6076 4.5905 -0.0748 21 1 5.6166 4.2164 0.0161 22 6 4.3541 5.7268 -0.8307 23 7 3.1438 6.2435 -0.8566 24 14 5.7306 6.5226 -1.8112 25 1 5.6993 6.0182 -3.2075 26 1 5.5488 7.9964 -1.8131 27 1 7.0378 6.1859 -1.1923 28 6 3.6885 2.6785 1.3041 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.7219 2.7374 -3.9349 35 1 1.6660 1.0264 -5.6952 36 1 -0.2566 -1.9939 -2.6943 37 1 -0.7881 -2.8605 -4.0319 38 1 1.2785 3.6401 2.4351 39 1 0.4032 3.1768 0.9389 40 1 2.1177 5.3624 1.0981 41 1 1.7852 4.4749 -0.4153 42 1 2.9668 7.0378 -1.3846 43 1 4.3979 2.0099 0.8164 44 1 3.9933 2.8714 2.3327 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033951986.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:29 Heat of formation + Delta-G solvation = 53.828858 kcal Electronic energy + Delta-G solvation = -28862.853641 eV Core-core repulsion = 25011.990383 eV Total energy + Delta-G solvation = -3850.863259 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.83802 -41.01961 -39.89948 -37.63720 -37.03809 -34.93375 -34.23054 -32.39599 -31.22233 -30.88030 -30.35409 -28.68925 -26.37482 -25.34508 -24.07939 -23.14012 -21.97110 -21.77897 -21.06033 -20.51975 -19.04312 -18.63178 -18.01574 -17.87093 -17.07584 -16.58792 -16.46716 -16.29132 -15.96652 -15.64680 -15.54370 -15.20005 -14.69165 -14.34827 -14.06070 -13.89236 -13.74316 -13.71690 -13.54272 -13.46682 -13.30154 -12.84737 -12.72215 -12.71332 -12.31392 -12.17041 -11.95334 -11.65765 -11.59046 -11.54027 -11.33493 -10.88068 -10.53394 -10.36012 -10.10896 -9.43386 -9.31062 -8.30157 -7.62132 -4.84665 0.03073 1.18801 1.43763 1.47802 1.53228 1.75636 2.13824 2.22694 2.40859 2.56410 2.62291 3.57143 3.58249 3.81535 3.85222 3.87224 3.98583 4.17409 4.20288 4.23355 4.30360 4.39342 4.42065 4.70789 4.77336 4.80891 4.82819 4.95602 5.02098 5.05305 5.08520 5.16596 5.31724 5.43050 5.57724 5.67083 5.76777 5.84568 5.91732 6.10974 6.12286 6.33694 6.46028 6.62362 7.12103 7.35948 7.62469 8.07814 8.70508 9.49767 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015169 B = 0.004807 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.434391 B = 5823.927841 C = 7212.314788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.079 3.921 3 N -0.606 5.606 4 C 0.515 3.485 5 O -0.436 6.436 6 C 0.008 3.992 7 C -0.160 4.160 8 C -0.129 4.129 9 C -0.040 4.040 10 C 0.600 3.400 11 N -0.827 5.827 12 O -0.568 6.568 13 N -0.504 5.504 14 H 0.437 0.563 15 C 0.151 3.849 16 H 0.144 0.856 17 C -0.144 4.144 18 C 0.198 3.802 19 N -0.586 5.586 20 C -0.202 4.202 21 H 0.062 0.938 22 C -0.055 4.055 23 N -0.941 5.941 24 Si 0.950 3.050 25 H -0.300 1.300 26 H -0.299 1.299 27 H -0.272 1.272 28 C 0.119 3.881 29 H 0.078 0.922 30 H 0.041 0.959 31 H 0.115 0.885 32 H 0.075 0.925 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.155 0.845 36 H 0.411 0.589 37 H 0.422 0.578 38 H 0.085 0.915 39 H 0.068 0.932 40 H -0.023 1.023 41 H 0.030 0.970 42 H 0.233 0.767 43 H 0.027 0.973 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.465 -22.694 4.545 25.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.043 4.043 3 N -0.343 5.343 4 C 0.299 3.701 5 O -0.303 6.303 6 C -0.111 4.111 7 C -0.186 4.186 8 C -0.155 4.155 9 C -0.158 4.158 10 C 0.385 3.615 11 N -0.392 5.392 12 O -0.446 6.446 13 N -0.115 5.115 14 H 0.289 0.711 15 C 0.047 3.953 16 H 0.161 0.839 17 C -0.184 4.184 18 C 0.073 3.927 19 N -0.311 5.311 20 C -0.332 4.332 21 H 0.080 0.920 22 C -0.248 4.248 23 N -0.592 5.592 24 Si 0.782 3.218 25 H -0.228 1.228 26 H -0.226 1.226 27 H -0.197 1.197 28 C -0.008 4.008 29 H 0.097 0.903 30 H 0.060 0.940 31 H 0.134 0.866 32 H 0.093 0.907 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.172 0.828 36 H 0.242 0.758 37 H 0.256 0.744 38 H 0.103 0.897 39 H 0.087 0.913 40 H -0.005 1.005 41 H 0.047 0.953 42 H 0.043 0.957 43 H 0.045 0.955 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -10.151 -21.981 3.831 24.513 hybrid contribution 0.654 0.903 -0.502 1.222 sum -9.498 -21.078 3.329 23.358 Atomic orbital electron populations 1.22618 0.94562 1.05085 1.03264 1.22228 0.95382 0.81679 1.05055 1.47763 1.67753 1.14429 1.04332 1.17992 0.82368 0.86667 0.83055 1.91656 1.36343 1.17541 1.84750 1.20991 1.03677 0.90691 0.95761 1.21258 1.04743 1.01367 0.91202 1.21344 1.00211 0.93979 0.99987 1.20552 1.10273 1.00928 0.84004 1.17007 0.77606 0.81048 0.85813 1.43433 1.57305 1.27815 1.10598 1.90860 1.61771 1.76460 1.15546 1.43272 1.41322 1.19729 1.07162 0.71066 1.22286 0.93797 0.93447 0.85729 0.83865 1.23210 0.98241 0.96056 1.00857 1.20881 0.84076 0.91699 0.96011 1.44276 1.04812 1.22535 1.59428 1.19033 0.87401 1.05002 1.21735 0.91960 1.25199 0.97806 0.99865 1.01917 1.70180 1.20460 1.23215 1.45339 0.85451 0.79931 0.77129 0.79300 1.22800 1.22630 1.19742 1.22073 0.95991 0.87869 0.94828 0.90282 0.93980 0.86619 0.90710 0.85896 0.85529 0.82750 0.75806 0.74425 0.89687 0.91327 1.00522 0.95252 0.95731 0.95485 0.94640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.77 8.96 71.98 0.65 -1.12 16 2 C 0.08 1.07 5.60 86.38 0.48 1.55 16 3 N -0.61 -16.30 2.56 -794.12 -2.03 -18.33 16 4 C 0.51 19.37 7.11 86.62 0.62 19.99 16 5 O -0.44 -22.10 8.69 -4.08 -0.04 -22.13 16 6 C 0.01 0.27 6.60 40.69 0.27 0.54 16 7 C -0.16 -5.79 10.61 22.49 0.24 -5.55 16 8 C -0.13 -3.94 10.60 22.49 0.24 -3.70 16 9 C -0.04 -1.00 7.04 40.69 0.29 -0.72 16 10 C 0.60 12.88 8.08 86.63 0.70 13.58 16 11 N -0.83 -7.89 8.87 -175.98 -1.56 -9.45 16 12 O -0.57 -16.90 17.71 -4.07 -0.07 -16.97 16 13 N -0.50 -11.03 4.18 -172.56 -0.72 -11.75 16 14 H 0.44 5.97 2.55 -92.71 -0.24 5.74 16 15 C 0.15 4.30 3.81 46.38 0.18 4.48 16 16 H 0.14 2.52 7.86 -2.38 -0.02 2.50 16 17 C -0.14 -4.97 6.45 31.78 0.20 -4.76 16 18 C 0.20 10.11 4.18 86.73 0.36 10.47 16 19 N -0.59 -30.65 1.78 -692.00 -1.23 -31.89 16 20 C -0.20 -12.00 9.07 84.03 0.76 -11.24 16 21 H 0.06 3.65 7.83 -2.91 -0.02 3.63 16 22 C -0.06 -3.38 5.35 84.86 0.45 -2.93 16 23 N -0.94 -60.79 10.34 21.65 0.22 -60.57 16 24 Si 0.95 50.06 29.56 68.60 2.03 52.08 16 25 H -0.30 -15.97 7.11 99.48 0.71 -15.27 16 26 H -0.30 -15.76 7.11 99.48 0.71 -15.05 16 27 H -0.27 -13.54 7.11 99.48 0.71 -12.84 16 28 C 0.12 4.66 6.38 86.86 0.55 5.21 16 29 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.04 0.57 6.54 -2.39 -0.02 0.56 16 31 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 32 H 0.08 0.98 5.19 -2.39 -0.01 0.97 16 33 H 0.12 0.92 7.93 -2.39 -0.02 0.90 16 34 H 0.13 5.25 8.06 -2.91 -0.02 5.22 16 35 H 0.15 4.45 8.06 -2.91 -0.02 4.42 16 36 H 0.41 1.25 7.93 -92.71 -0.74 0.51 16 37 H 0.42 2.51 8.93 -92.70 -0.83 1.68 16 38 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 40 H -0.02 -1.38 7.63 -2.39 -0.02 -1.39 16 41 H 0.03 1.76 5.27 -2.39 -0.01 1.75 16 42 H 0.23 14.93 8.31 -92.71 -0.77 14.15 16 43 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 44 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -89.68 345.78 1.85 -87.83 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -0.73 Total: 5.36 kcal Atomic # 6 Polarization: 19.82 SS G_CDS: 5.99 Total: 25.81 kcal Atomic # 7 Polarization: -126.65 SS G_CDS: -5.33 Total: -131.98 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -0.11 Total: -39.10 kcal Atomic # 14 Polarization: 50.06 SS G_CDS: 2.03 Total: 52.08 kcal Total: -89.68 1.85 -87.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033951986.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.658 kcal (2) G-P(sol) polarization free energy of solvation -89.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds