Wall clock time and date at job start Tue Mar 31 2020 13:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46862 * 2 1 4 4 C 1.34772 * 120.00555 * 82.87384 * 3 2 1 5 5 O 1.21521 * 120.00722 * 184.67541 * 4 3 2 6 6 C 1.48142 * 119.99694 * 4.67358 * 4 3 2 7 7 C 1.39287 * 120.05707 * 173.51216 * 6 4 3 8 8 N 1.32155 * 120.01627 * 179.97438 * 7 6 4 9 9 C 1.31986 * 120.14512 * 0.02562 * 8 7 6 10 10 C 1.39447 * 120.11580 * 359.97316 * 9 8 7 11 11 O 1.35671 * 120.00881 * 179.97438 * 10 9 8 12 12 C 1.42897 * 116.99597 * 179.97438 * 11 10 9 13 13 N 1.32185 * 119.97973 * 0.27801 * 10 9 8 14 14 C 1.46505 * 119.99859 * 262.87267 * 3 2 1 15 15 H 1.09005 * 110.88179 * 10.15246 * 14 3 2 16 16 C 1.55153 * 111.00214 * 246.27363 * 14 3 2 17 17 C 1.54324 * 102.94397 * 277.42497 * 16 14 3 18 18 N 1.47026 * 107.26985 * 337.80900 * 17 16 14 19 19 C 1.36941 * 125.64757 * 178.98248 * 18 17 16 20 20 H 1.07999 * 119.99592 * 185.13166 * 19 18 17 21 21 C 1.38809 * 119.99712 * 5.13367 * 19 18 17 22 22 N 1.31613 * 120.00610 * 5.16591 * 21 19 18 23 23 Si 1.86804 * 119.99741 * 185.16357 * 21 19 18 24 24 H 1.48502 * 109.46922 * 94.99728 * 23 21 19 25 25 H 1.48499 * 109.47263 * 215.00229 * 23 21 19 26 26 H 1.48501 * 109.46905 * 335.00246 * 23 21 19 27 27 C 1.47423 * 108.70224 * 358.94213 * 18 17 16 28 28 H 1.09002 * 109.47310 * 299.99972 * 1 2 3 29 29 H 1.08994 * 109.47305 * 60.00076 * 1 2 3 30 30 H 1.09000 * 109.46976 * 180.02562 * 1 2 3 31 31 H 1.08989 * 109.47432 * 239.99844 * 2 1 3 32 32 H 1.09002 * 109.47021 * 119.99361 * 2 1 3 33 33 H 1.07992 * 119.98924 * 0.02562 * 7 6 4 34 34 H 1.07996 * 119.94032 * 179.97438 * 9 8 7 35 35 H 1.09001 * 109.46621 * 180.02562 * 12 11 10 36 36 H 1.08999 * 109.47486 * 60.00559 * 12 11 10 37 37 H 1.09005 * 109.47599 * 300.00133 * 12 11 10 38 38 H 1.09000 * 110.72400 * 35.79365 * 16 14 3 39 39 H 1.09010 * 110.71750 * 159.06451 * 16 14 3 40 40 H 1.09000 * 109.88224 * 97.22566 * 17 16 14 41 41 H 1.08998 * 109.88529 * 218.39676 * 17 16 14 42 42 H 0.96997 * 120.00574 * 179.97438 * 22 21 19 43 43 H 1.09001 * 110.36703 * 265.28861 * 27 18 17 44 44 H 1.09004 * 110.37016 * 142.96580 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1064 2.0650 1.1581 5 8 2.4300 3.2363 1.1492 6 6 1.8088 1.3885 2.4420 7 6 2.0289 2.0513 3.6471 8 7 1.7626 1.4473 4.7920 9 6 1.2884 0.2156 4.7970 10 6 1.0659 -0.4534 3.5939 11 8 0.5788 -1.7197 3.6015 12 6 0.3748 -2.3438 2.3324 13 7 1.3352 0.1444 2.4461 14 6 2.4108 2.0194 -1.2590 15 1 2.1163 1.4087 -2.1125 16 6 3.9345 2.3110 -1.2832 17 6 4.0443 3.6409 -0.5079 18 7 2.7280 4.2928 -0.5709 19 6 2.4007 5.4881 0.0117 20 1 1.3817 5.8443 -0.0225 21 6 3.3787 6.2418 0.6459 22 7 4.6372 5.8594 0.6003 23 14 2.9084 7.7990 1.5644 24 1 2.7173 7.4863 3.0035 25 1 3.9891 8.8067 1.4160 26 1 1.6450 8.3419 1.0037 27 6 1.8192 3.4470 -1.3659 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 2.4164 3.0593 3.6459 34 1 1.0723 -0.2751 5.7345 35 1 -0.0167 -3.3501 2.4813 36 1 1.3230 -2.3980 1.7974 37 1 -0.3379 -1.7595 1.7504 38 1 4.4866 1.5210 -0.7740 39 1 4.2879 2.4314 -2.3074 40 1 4.3111 3.4437 0.5304 41 1 4.7966 4.2792 -0.9713 42 1 5.3206 6.3863 1.0432 43 1 1.8071 3.7757 -2.4051 44 1 0.8132 3.4731 -0.9472 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033976474.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:00 Heat of formation + Delta-G solvation = 84.098358 kcal Electronic energy + Delta-G solvation = -29233.778584 eV Core-core repulsion = 25384.227910 eV Total energy + Delta-G solvation = -3849.550675 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -41.49946 -39.68508 -38.46891 -36.16455 -35.56518 -33.86573 -32.14964 -30.98098 -30.07063 -28.82855 -27.69356 -27.14507 -25.37356 -24.26605 -23.68891 -23.01002 -21.42190 -19.84508 -19.06512 -18.36938 -17.39635 -16.87250 -16.67205 -16.47595 -16.26389 -15.41941 -14.98668 -14.69465 -14.47887 -14.17953 -13.89554 -13.78851 -13.61222 -13.28235 -12.85221 -12.30116 -12.12693 -12.05203 -11.89453 -11.77826 -11.72956 -11.65061 -11.36887 -11.09490 -10.72424 -10.69846 -10.66780 -10.38366 -10.16167 -9.93701 -9.72057 -9.41881 -9.29857 -8.81505 -8.68837 -8.36936 -7.84091 -6.26160 -5.40441 -2.66554 0.53273 1.05217 2.74020 3.19835 3.29611 3.55894 3.60994 3.62234 3.91936 3.99518 4.26152 4.44017 4.74131 4.92284 4.96965 5.04408 5.20157 5.23164 5.27576 5.38571 5.44906 5.49388 5.61898 5.64805 5.70699 5.86402 5.90604 6.02282 6.10622 6.13625 6.28650 6.39821 6.54745 6.62721 6.65051 6.76256 6.86592 7.05633 7.29747 7.62873 7.78338 7.90718 7.95406 8.08268 8.55232 8.93992 9.51439 10.13479 10.79855 11.72008 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015513 B = 0.005226 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.516068 B = 5356.280716 C = 6575.781636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.101 3.899 3 N -0.593 5.593 4 C 0.515 3.485 5 O -0.387 6.387 6 C 0.090 3.910 7 C 0.065 3.935 8 N -0.406 5.406 9 C 0.051 3.949 10 C 0.258 3.742 11 O -0.301 6.301 12 C 0.029 3.971 13 N -0.465 5.465 14 C 0.132 3.868 15 H 0.084 0.916 16 C -0.160 4.160 17 C 0.188 3.812 18 N -0.566 5.566 19 C -0.187 4.187 20 H 0.066 0.934 21 C -0.009 4.009 22 N -0.924 5.924 23 Si 0.899 3.101 24 H -0.293 1.293 25 H -0.296 1.296 26 H -0.286 1.286 27 C 0.131 3.869 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.108 0.892 33 H 0.188 0.812 34 H 0.175 0.825 35 H 0.097 0.903 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.042 0.958 41 H 0.045 0.955 42 H 0.245 0.755 43 H 0.023 0.977 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.426 -18.973 1.268 20.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.023 4.023 3 N -0.330 5.330 4 C 0.296 3.704 5 O -0.250 6.250 6 C -0.050 4.050 7 C -0.093 4.093 8 N -0.120 5.120 9 C -0.114 4.114 10 C 0.074 3.926 11 O -0.206 6.206 12 C -0.066 4.066 13 N -0.199 5.199 14 C 0.027 3.973 15 H 0.102 0.898 16 C -0.199 4.199 17 C 0.064 3.936 18 N -0.291 5.291 19 C -0.316 4.316 20 H 0.084 0.916 21 C -0.204 4.204 22 N -0.574 5.574 23 Si 0.731 3.269 24 H -0.221 1.221 25 H -0.223 1.223 26 H -0.212 1.212 27 C 0.003 3.997 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.125 0.875 33 H 0.205 0.795 34 H 0.192 0.808 35 H 0.115 0.885 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.041 0.959 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.186 -18.230 1.581 19.659 hybrid contribution -0.382 0.451 0.312 0.669 sum -7.569 -17.779 1.894 19.415 Atomic orbital electron populations 1.22143 0.96871 1.00702 1.01660 1.22007 0.94044 0.83153 1.03074 1.47612 1.65827 1.13547 1.05995 1.18124 0.82273 0.87692 0.82342 1.91699 1.38468 1.11186 1.83677 1.22766 0.95485 0.89109 0.97640 1.23760 0.96902 1.02015 0.86614 1.68622 1.07116 1.07262 1.28984 1.23104 0.99566 0.91505 0.97183 1.21194 0.93049 0.86708 0.91641 1.86263 1.78333 1.23094 1.32925 1.23175 1.02224 0.97430 0.83804 1.68710 1.14331 1.10501 1.26370 1.22362 0.95796 0.94894 0.84207 0.89816 1.23391 0.94548 1.01026 1.00960 1.21122 0.88150 0.87311 0.97049 1.44114 1.06925 1.20233 1.57839 1.18788 0.93304 0.92830 1.26650 0.91589 1.24544 0.95397 0.98515 1.01912 1.69935 0.99058 1.39611 1.48784 0.86276 0.76815 0.83512 0.80271 1.22116 1.22261 1.21168 1.21749 0.94405 0.88659 0.94857 0.92795 0.93160 0.92653 0.92149 0.87518 0.79503 0.80806 0.88476 0.92085 0.91508 0.92511 0.91764 0.94020 0.93663 0.94473 0.95937 0.94744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 8.67 37.16 0.32 -1.42 16 2 C 0.10 1.24 5.70 -4.04 -0.02 1.22 16 3 N -0.59 -9.70 2.58 -164.67 -0.42 -10.13 16 4 C 0.51 9.83 7.05 -12.20 -0.09 9.74 16 5 O -0.39 -9.18 8.32 5.35 0.04 -9.14 16 6 C 0.09 1.49 6.52 -82.85 -0.54 0.95 16 7 C 0.07 1.09 10.76 -17.02 -0.18 0.91 16 8 N -0.41 -6.11 10.48 -12.59 -0.13 -6.24 16 9 C 0.05 0.62 11.18 -17.04 -0.19 0.43 16 10 C 0.26 3.20 7.50 -16.95 -0.13 3.07 16 11 O -0.30 -3.13 10.49 -18.72 -0.20 -3.33 16 12 C 0.03 0.22 10.20 101.05 1.03 1.25 16 13 N -0.47 -6.36 3.63 -9.68 -0.04 -6.40 16 14 C 0.13 2.25 3.77 -65.78 -0.25 2.00 16 15 H 0.08 1.17 7.89 -51.93 -0.41 0.76 16 16 C -0.16 -3.01 6.52 -24.90 -0.16 -3.17 16 17 C 0.19 4.66 4.24 -3.06 -0.01 4.65 16 18 N -0.57 -14.52 1.73 -170.07 -0.29 -14.81 16 19 C -0.19 -5.34 8.74 -15.06 -0.13 -5.47 16 20 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.01 -0.26 5.46 -17.43 -0.10 -0.35 16 22 N -0.92 -28.05 10.41 55.49 0.58 -27.48 16 23 Si 0.90 23.24 29.56 -169.99 -5.02 18.21 16 24 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 25 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 C 0.13 2.74 6.18 -2.53 -0.02 2.72 16 28 H 0.05 0.72 6.94 -51.93 -0.36 0.35 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.47 6.74 -51.93 -0.35 0.12 16 31 H 0.06 0.64 7.90 -51.94 -0.41 0.23 16 32 H 0.11 1.33 4.11 -53.89 -0.22 1.11 16 33 H 0.19 3.39 7.65 -52.49 -0.40 2.99 16 34 H 0.17 1.58 8.06 -52.49 -0.42 1.15 16 35 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.46 7.33 -51.93 -0.38 0.08 16 37 H 0.07 0.52 5.56 -51.93 -0.29 0.23 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 40 H 0.04 1.16 6.26 -51.93 -0.32 0.84 16 41 H 0.05 1.27 7.10 -51.93 -0.37 0.90 16 42 H 0.24 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 341.57 15.07 5.15 5.15 Total: -1.00 -33.08 341.57 -6.82 -39.91 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -6.02 Total: -2.27 kcal Atomic # 6 Polarization: 16.99 SS G_CDS: -0.46 Total: 16.53 kcal Atomic # 7 Polarization: -64.74 SS G_CDS: -0.31 Total: -65.05 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -0.15 Total: -12.47 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.02 Total: 18.21 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.08 -6.82 -39.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033976474.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.005 kcal (2) G-P(sol) polarization free energy of solvation -33.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds