Wall clock time and date at job start Tue Mar 31 2020 13:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46862 * 2 1 4 4 C 1.34772 * 120.00555 * 82.87384 * 3 2 1 5 5 O 1.21521 * 120.00722 * 184.67541 * 4 3 2 6 6 C 1.48142 * 119.99694 * 4.67358 * 4 3 2 7 7 C 1.39287 * 120.05707 * 173.51216 * 6 4 3 8 8 N 1.32155 * 120.01627 * 179.97438 * 7 6 4 9 9 C 1.31986 * 120.14512 * 0.02562 * 8 7 6 10 10 C 1.39447 * 120.11580 * 359.97316 * 9 8 7 11 11 O 1.35671 * 120.00881 * 179.97438 * 10 9 8 12 12 C 1.42897 * 116.99597 * 179.97438 * 11 10 9 13 13 N 1.32185 * 119.97973 * 0.27801 * 10 9 8 14 14 C 1.46505 * 119.99859 * 262.87267 * 3 2 1 15 15 H 1.09005 * 110.88179 * 10.15246 * 14 3 2 16 16 C 1.55153 * 111.00214 * 246.27363 * 14 3 2 17 17 C 1.54324 * 102.94397 * 277.42497 * 16 14 3 18 18 N 1.47026 * 107.26985 * 337.80900 * 17 16 14 19 19 C 1.36941 * 125.64757 * 178.98248 * 18 17 16 20 20 H 1.07999 * 119.99592 * 185.13166 * 19 18 17 21 21 C 1.38809 * 119.99712 * 5.13367 * 19 18 17 22 22 N 1.31613 * 120.00610 * 5.16591 * 21 19 18 23 23 Si 1.86804 * 119.99741 * 185.16357 * 21 19 18 24 24 H 1.48502 * 109.46922 * 94.99728 * 23 21 19 25 25 H 1.48499 * 109.47263 * 215.00229 * 23 21 19 26 26 H 1.48501 * 109.46905 * 335.00246 * 23 21 19 27 27 C 1.47423 * 108.70224 * 358.94213 * 18 17 16 28 28 H 1.09002 * 109.47310 * 299.99972 * 1 2 3 29 29 H 1.08994 * 109.47305 * 60.00076 * 1 2 3 30 30 H 1.09000 * 109.46976 * 180.02562 * 1 2 3 31 31 H 1.08989 * 109.47432 * 239.99844 * 2 1 3 32 32 H 1.09002 * 109.47021 * 119.99361 * 2 1 3 33 33 H 1.07992 * 119.98924 * 0.02562 * 7 6 4 34 34 H 1.07996 * 119.94032 * 179.97438 * 9 8 7 35 35 H 1.09001 * 109.46621 * 180.02562 * 12 11 10 36 36 H 1.08999 * 109.47486 * 60.00559 * 12 11 10 37 37 H 1.09005 * 109.47599 * 300.00133 * 12 11 10 38 38 H 1.09000 * 110.72400 * 35.79365 * 16 14 3 39 39 H 1.09010 * 110.71750 * 159.06451 * 16 14 3 40 40 H 1.09000 * 109.88224 * 97.22566 * 17 16 14 41 41 H 1.08998 * 109.88529 * 218.39676 * 17 16 14 42 42 H 0.96997 * 120.00574 * 179.97438 * 22 21 19 43 43 H 1.09001 * 110.36703 * 265.28861 * 27 18 17 44 44 H 1.09004 * 110.37016 * 142.96580 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1064 2.0650 1.1581 5 8 2.4300 3.2363 1.1492 6 6 1.8088 1.3885 2.4420 7 6 2.0289 2.0513 3.6471 8 7 1.7626 1.4473 4.7920 9 6 1.2884 0.2156 4.7970 10 6 1.0659 -0.4534 3.5939 11 8 0.5788 -1.7197 3.6015 12 6 0.3748 -2.3438 2.3324 13 7 1.3352 0.1444 2.4461 14 6 2.4108 2.0194 -1.2590 15 1 2.1163 1.4087 -2.1125 16 6 3.9345 2.3110 -1.2832 17 6 4.0443 3.6409 -0.5079 18 7 2.7280 4.2928 -0.5709 19 6 2.4007 5.4881 0.0117 20 1 1.3817 5.8443 -0.0225 21 6 3.3787 6.2418 0.6459 22 7 4.6372 5.8594 0.6003 23 14 2.9084 7.7990 1.5644 24 1 2.7173 7.4863 3.0035 25 1 3.9891 8.8067 1.4160 26 1 1.6450 8.3419 1.0037 27 6 1.8192 3.4470 -1.3659 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 2.4164 3.0593 3.6459 34 1 1.0723 -0.2751 5.7345 35 1 -0.0167 -3.3501 2.4813 36 1 1.3230 -2.3980 1.7974 37 1 -0.3379 -1.7595 1.7504 38 1 4.4866 1.5210 -0.7740 39 1 4.2879 2.4314 -2.3074 40 1 4.3111 3.4437 0.5304 41 1 4.7966 4.2792 -0.9713 42 1 5.3206 6.3863 1.0432 43 1 1.8071 3.7757 -2.4051 44 1 0.8132 3.4731 -0.9472 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033976474.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:59 Heat of formation + Delta-G solvation = 61.396918 kcal Electronic energy + Delta-G solvation = -29234.762993 eV Core-core repulsion = 25384.227910 eV Total energy + Delta-G solvation = -3850.535083 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.63008 -41.08648 -39.42410 -37.81635 -36.89778 -35.13777 -33.98178 -32.10652 -31.49774 -30.50727 -28.96608 -28.32613 -26.75584 -26.05066 -24.80617 -24.08815 -22.76372 -21.79036 -20.37868 -19.39974 -18.86882 -18.29893 -17.97442 -17.79781 -17.27743 -16.82970 -16.51050 -16.28496 -15.75486 -15.58228 -15.45809 -14.98359 -14.92335 -14.52710 -13.98430 -13.67829 -13.63671 -13.49031 -13.33756 -12.99266 -12.90188 -12.79160 -12.73672 -12.70026 -12.27589 -12.20272 -12.15950 -11.96552 -11.81623 -11.60757 -11.47810 -11.30644 -10.76730 -10.53453 -10.03625 -9.81603 -9.32002 -8.30662 -7.61689 -4.85947 -0.62970 -0.07012 1.43887 1.47264 1.53490 1.83305 1.92788 2.02583 2.61688 2.72052 2.83461 3.11906 3.38898 3.55718 3.73688 3.86511 4.01584 4.07631 4.22494 4.26799 4.35620 4.39885 4.46008 4.48117 4.60463 4.68536 4.76934 4.82258 4.86872 4.91270 4.97372 5.05677 5.13626 5.15703 5.22859 5.49916 5.56640 5.82794 5.88901 5.96767 5.99542 6.02857 6.42452 6.48630 6.66273 7.34045 7.54115 8.04457 8.68458 9.49232 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015513 B = 0.005226 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.516068 B = 5356.280716 C = 6575.781636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.097 3.903 3 N -0.589 5.589 4 C 0.512 3.488 5 O -0.450 6.450 6 C 0.077 3.923 7 C 0.045 3.955 8 N -0.420 5.420 9 C 0.066 3.934 10 C 0.267 3.733 11 O -0.295 6.295 12 C 0.019 3.981 13 N -0.452 5.452 14 C 0.145 3.855 15 H 0.137 0.863 16 C -0.145 4.145 17 C 0.200 3.800 18 N -0.579 5.579 19 C -0.183 4.183 20 H 0.060 0.940 21 C -0.066 4.066 22 N -0.952 5.952 23 Si 0.954 3.046 24 H -0.299 1.299 25 H -0.298 1.298 26 H -0.273 1.273 27 C 0.126 3.874 28 H 0.028 0.972 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.157 0.843 34 H 0.214 0.786 35 H 0.129 0.871 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.001 0.999 41 H 0.000 1.000 42 H 0.235 0.765 43 H 0.036 0.964 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.373 -22.979 0.556 24.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.025 4.025 3 N -0.324 5.324 4 C 0.294 3.706 5 O -0.318 6.318 6 C -0.062 4.062 7 C -0.111 4.111 8 N -0.134 5.134 9 C -0.100 4.100 10 C 0.081 3.919 11 O -0.199 6.199 12 C -0.075 4.075 13 N -0.186 5.186 14 C 0.041 3.959 15 H 0.154 0.846 16 C -0.184 4.184 17 C 0.076 3.924 18 N -0.303 5.303 19 C -0.313 4.313 20 H 0.078 0.922 21 C -0.258 4.258 22 N -0.604 5.604 23 Si 0.786 3.214 24 H -0.228 1.228 25 H -0.225 1.225 26 H -0.199 1.199 27 C -0.001 4.001 28 H 0.048 0.952 29 H 0.066 0.934 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.125 0.875 33 H 0.174 0.826 34 H 0.230 0.770 35 H 0.147 0.853 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.044 0.956 43 H 0.053 0.947 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -9.179 -22.283 0.811 24.113 hybrid contribution 0.076 1.436 0.601 1.558 sum -9.103 -20.847 1.412 22.791 Atomic orbital electron populations 1.22074 0.95784 1.02416 1.00307 1.22280 0.94807 0.80696 1.04676 1.47768 1.64779 1.14945 1.04904 1.18490 0.81097 0.87308 0.83696 1.91663 1.41467 1.13817 1.84857 1.22211 0.97486 0.90325 0.96143 1.23340 0.98594 1.01413 0.87758 1.68603 1.07946 1.08737 1.28161 1.23765 0.97014 0.90304 0.98921 1.21373 0.91863 0.87455 0.91190 1.86305 1.77433 1.21512 1.34660 1.23512 1.02660 0.98694 0.82674 1.68680 1.13989 1.08956 1.27007 1.22347 0.93822 0.93558 0.86193 0.84589 1.23229 0.96384 0.97592 1.01193 1.20768 0.86867 0.89549 0.95257 1.44246 1.08226 1.19975 1.57848 1.18999 0.92776 0.93807 1.25699 0.92249 1.25177 0.95528 1.01499 1.03553 1.70165 0.99687 1.40538 1.50009 0.85379 0.76762 0.80556 0.78725 1.22767 1.22526 1.19859 1.21946 0.93255 0.90565 0.94315 0.95250 0.93426 0.89344 0.88984 0.87456 0.82592 0.76969 0.85252 0.91656 0.91473 0.91309 0.89483 0.98144 0.98144 0.95574 0.94661 0.95785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 8.67 71.98 0.62 -2.15 16 2 C 0.10 2.02 5.70 86.38 0.49 2.52 16 3 N -0.59 -18.26 2.58 -793.17 -2.04 -20.30 16 4 C 0.51 19.99 7.05 86.88 0.61 20.60 16 5 O -0.45 -22.66 8.32 -3.78 -0.03 -22.69 16 6 C 0.08 2.58 6.52 41.83 0.27 2.85 16 7 C 0.05 1.61 10.76 84.90 0.91 2.52 16 8 N -0.42 -12.67 10.48 -193.73 -2.03 -14.70 16 9 C 0.07 1.48 11.18 84.96 0.95 2.43 16 10 C 0.27 5.89 7.50 84.93 0.64 6.53 16 11 O -0.29 -4.93 10.49 -89.88 -0.94 -5.87 16 12 C 0.02 0.20 10.20 113.37 1.16 1.36 16 13 N -0.45 -11.55 3.63 -297.45 -1.08 -12.63 16 14 C 0.14 4.60 3.77 46.38 0.17 4.77 16 15 H 0.14 3.02 7.89 -2.38 -0.02 3.00 16 16 C -0.14 -5.26 6.52 31.78 0.21 -5.05 16 17 C 0.20 10.39 4.24 86.73 0.37 10.76 16 18 N -0.58 -30.77 1.73 -691.99 -1.20 -31.97 16 19 C -0.18 -10.92 8.74 84.03 0.73 -10.18 16 20 H 0.06 3.53 7.83 -2.91 -0.02 3.50 16 21 C -0.07 -4.05 5.46 84.86 0.46 -3.59 16 22 N -0.95 -61.45 10.41 21.65 0.23 -61.22 16 23 Si 0.95 50.14 29.56 68.60 2.03 52.17 16 24 H -0.30 -15.85 7.11 99.48 0.71 -15.15 16 25 H -0.30 -15.63 7.11 99.48 0.71 -14.92 16 26 H -0.27 -13.63 7.11 99.48 0.71 -12.92 16 27 C 0.13 5.19 6.18 86.85 0.54 5.73 16 28 H 0.03 0.70 6.94 -2.39 -0.02 0.68 16 29 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 1.07 6.74 -2.39 -0.02 1.06 16 31 H 0.09 1.42 7.90 -2.39 -0.02 1.40 16 32 H 0.11 2.30 4.11 -6.26 -0.03 2.27 16 33 H 0.16 6.40 7.65 -2.91 -0.02 6.38 16 34 H 0.21 3.02 8.06 -2.91 -0.02 2.99 16 35 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.06 0.68 7.33 -2.39 -0.02 0.66 16 37 H 0.07 0.74 5.56 -2.38 -0.01 0.73 16 38 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.09 2.79 8.14 -2.38 -0.02 2.77 16 40 H 0.00 0.03 6.26 -2.39 -0.01 0.02 16 41 H 0.00 0.03 7.10 -2.39 -0.02 0.01 16 42 H 0.23 14.95 8.31 -92.71 -0.77 14.18 16 43 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -79.32 341.57 4.08 -75.24 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: 1.01 Total: 2.88 kcal Atomic # 6 Polarization: 30.95 SS G_CDS: 8.14 Total: 39.09 kcal Atomic # 7 Polarization: -134.69 SS G_CDS: -6.13 Total: -140.82 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.97 Total: -28.56 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 2.03 Total: 52.17 kcal Total: -79.32 4.08 -75.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033976474.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.640 kcal (2) G-P(sol) polarization free energy of solvation -79.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds