Wall clock time and date at job start Tue Mar 31 2020 13:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47265 * 2 1 4 4 C 1.34768 * 120.00039 * 271.59807 * 3 2 1 5 5 O 1.21520 * 120.00540 * 185.24764 * 4 3 2 6 6 C 1.48141 * 120.00225 * 5.24720 * 4 3 2 7 7 C 1.39281 * 120.06131 * 186.18260 * 6 4 3 8 8 N 1.32157 * 120.01496 * 179.97438 * 7 6 4 9 9 C 1.31980 * 120.14891 * 0.02562 * 8 7 6 10 10 C 1.39447 * 120.11312 * 359.97438 * 9 8 7 11 11 O 1.35669 * 120.00859 * 180.02562 * 10 9 8 12 12 C 1.42898 * 117.00091 * 179.97438 * 11 10 9 13 13 N 1.32191 * 119.97981 * 359.72394 * 10 9 8 14 14 C 1.46500 * 120.00203 * 91.59676 * 3 2 1 15 15 H 1.09003 * 110.64000 * 1.69002 * 14 3 2 16 16 C 1.55155 * 110.72247 * 125.02107 * 14 3 2 17 17 C 1.54910 * 101.58095 * 153.86638 * 16 14 3 18 18 N 1.47428 * 104.83427 * 322.99069 * 17 16 14 19 19 C 1.36926 * 125.64841 * 204.16407 * 18 17 16 20 20 H 1.08003 * 119.99981 * 179.97438 * 19 18 17 21 21 C 1.38817 * 120.00275 * 359.95875 * 19 18 17 22 22 N 1.31615 * 119.99823 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99872 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.47272 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46661 * 120.00360 * 23 21 19 26 26 H 1.48500 * 109.46912 * 239.99839 * 23 21 19 27 27 C 1.47022 * 108.69760 * 24.12946 * 18 17 16 28 28 H 1.09003 * 109.47227 * 300.00416 * 1 2 3 29 29 H 1.09007 * 109.47265 * 59.99876 * 1 2 3 30 30 H 1.08999 * 109.47485 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46895 * 119.99778 * 2 1 3 32 32 H 1.08994 * 109.47456 * 239.99560 * 2 1 3 33 33 H 1.08001 * 119.98659 * 359.97438 * 7 6 4 34 34 H 1.07996 * 119.94432 * 179.97438 * 9 8 7 35 35 H 1.08997 * 109.47590 * 179.97438 * 12 11 10 36 36 H 1.09002 * 109.47091 * 299.99788 * 12 11 10 37 37 H 1.09005 * 109.47204 * 59.99586 * 12 11 10 38 38 H 1.08995 * 111.00841 * 271.94474 * 16 14 3 39 39 H 1.09011 * 110.99955 * 35.79474 * 16 14 3 40 40 H 1.09006 * 110.36558 * 204.15883 * 17 16 14 41 41 H 1.08996 * 110.45725 * 81.88044 * 17 16 14 42 42 H 0.97002 * 119.99555 * 180.02562 * 22 21 19 43 43 H 1.09003 * 109.88191 * 239.51990 * 27 18 17 44 44 H 1.09006 * 109.88050 * 118.35967 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2123 2.0274 -1.1667 5 8 2.7067 3.1374 -1.1717 6 6 1.8227 1.3845 -2.4432 7 6 2.1386 1.9928 -3.6557 8 7 1.7911 1.4182 -4.7939 9 6 1.1440 0.2680 -4.7853 10 6 0.8248 -0.3462 -3.5747 11 8 0.1600 -1.5288 -3.5684 12 6 -0.1337 -2.1011 -2.2924 13 7 1.1753 0.2214 -2.4335 14 6 2.2959 2.0601 1.2682 15 1 2.1160 1.3909 2.1096 16 6 3.7494 2.6023 1.2941 17 6 3.6231 3.7831 2.2887 18 7 2.2997 4.3706 2.0112 19 6 1.9273 5.6608 2.2788 20 1 0.9298 5.9963 2.0361 21 6 2.8317 6.5375 2.8622 22 7 4.0474 6.1287 3.1577 23 14 2.3238 8.2979 3.2265 24 1 0.9160 8.5049 2.8019 25 1 2.4438 8.5560 4.6840 26 1 3.2078 9.2319 2.4840 27 6 1.4464 3.3418 1.3988 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 2.6677 2.9343 -3.6655 34 1 0.8612 -0.1985 -5.7174 35 1 -0.6663 -3.0421 -2.4300 36 1 0.7961 -2.2849 -1.7540 37 1 -0.7552 -1.4127 -1.7197 38 1 4.4412 1.8480 1.6689 39 1 4.0531 2.9531 0.3077 40 1 4.4090 4.5167 2.1085 41 1 3.6702 3.4225 3.3162 42 1 4.6792 6.7413 3.5657 43 1 1.1183 3.6711 0.4128 44 1 0.5820 3.1505 2.0346 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033976476.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:05 Heat of formation + Delta-G solvation = 47.061857 kcal Electronic energy + Delta-G solvation = -28200.990657 eV Core-core repulsion = 24349.833959 eV Total energy + Delta-G solvation = -3851.156698 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.81908 -39.90301 -38.68618 -36.78974 -35.81346 -34.21782 -32.35712 -31.31970 -30.44913 -29.01529 -27.87004 -27.20504 -25.61876 -24.40631 -23.87416 -23.35190 -21.32398 -20.12474 -19.57525 -18.63514 -17.73635 -17.15578 -16.90471 -16.76033 -16.54075 -15.53118 -15.20976 -14.86254 -14.71964 -14.41386 -14.11504 -14.02937 -13.81237 -13.36544 -13.19762 -12.66966 -12.51970 -12.13576 -12.07570 -11.93064 -11.84408 -11.67824 -11.47450 -11.36929 -10.94499 -10.87030 -10.77685 -10.59408 -10.54141 -10.03054 -9.95616 -9.68510 -9.42650 -9.09743 -9.05150 -8.55741 -8.33723 -6.71647 -5.55206 -2.95749 0.17186 0.76426 2.51985 2.71614 2.92970 3.46297 3.51426 3.54046 3.54677 3.60830 3.95186 4.14255 4.56044 4.60019 4.79831 4.90163 4.93998 5.03129 5.06339 5.24769 5.27266 5.39867 5.46482 5.55319 5.62814 5.70777 5.77185 5.81028 5.84279 5.93822 6.24061 6.33795 6.54648 6.57774 6.64290 6.66023 6.75647 6.79938 7.17983 7.31448 7.51823 7.64950 7.73204 7.96093 8.26140 8.47276 9.32024 9.93040 10.57884 11.48820 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021988 B = 0.003457 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.088254 B = 8098.604358 C = 8647.646080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.107 3.893 3 N -0.583 5.583 4 C 0.562 3.438 5 O -0.490 6.490 6 C 0.080 3.920 7 C 0.067 3.933 8 N -0.405 5.405 9 C 0.061 3.939 10 C 0.263 3.737 11 O -0.298 6.298 12 C 0.024 3.976 13 N -0.461 5.461 14 C 0.133 3.867 15 H 0.091 0.909 16 C -0.159 4.159 17 C 0.158 3.842 18 N -0.596 5.596 19 C -0.215 4.215 20 H 0.076 0.924 21 C -0.012 4.012 22 N -0.923 5.923 23 Si 0.913 3.087 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.291 1.291 27 C 0.136 3.864 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.187 0.813 34 H 0.179 0.821 35 H 0.099 0.901 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.053 0.947 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.010 0.990 42 H 0.250 0.750 43 H 0.031 0.969 44 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.575 -19.982 -12.205 24.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.016 4.016 3 N -0.315 5.315 4 C 0.346 3.654 5 O -0.363 6.363 6 C -0.060 4.060 7 C -0.091 4.091 8 N -0.119 5.119 9 C -0.104 4.104 10 C 0.080 3.920 11 O -0.203 6.203 12 C -0.071 4.071 13 N -0.195 5.195 14 C 0.030 3.970 15 H 0.109 0.891 16 C -0.198 4.198 17 C 0.033 3.967 18 N -0.322 5.322 19 C -0.343 4.343 20 H 0.094 0.906 21 C -0.208 4.208 22 N -0.572 5.572 23 Si 0.744 3.256 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.218 1.218 27 C 0.009 3.991 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.204 0.796 34 H 0.196 0.804 35 H 0.117 0.883 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.071 0.929 39 H 0.106 0.894 40 H 0.125 0.875 41 H 0.028 0.972 42 H 0.061 0.939 43 H 0.049 0.951 44 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -6.314 -19.331 -12.280 23.756 hybrid contribution -0.489 0.600 0.594 0.976 sum -6.803 -18.731 -11.686 23.102 Atomic orbital electron populations 1.22270 0.96202 1.01249 1.02138 1.21907 0.94700 0.82129 1.02900 1.47873 1.63974 1.14084 1.05551 1.17658 0.80100 0.85357 0.82291 1.90927 1.41485 1.18134 1.85745 1.22245 0.96194 0.90884 0.96635 1.23697 0.97701 1.01085 0.86619 1.68641 1.07152 1.07087 1.29028 1.23197 0.97495 0.92429 0.97247 1.21150 0.91822 0.87778 0.91296 1.86279 1.69814 1.31159 1.33035 1.23362 1.01749 0.98631 0.83344 1.68689 1.12990 1.10449 1.27355 1.22319 0.97764 0.94024 0.82876 0.89068 1.23513 0.93484 0.99400 1.03453 1.21850 0.90421 0.92029 0.92425 1.44313 1.09445 1.07273 1.71190 1.19097 0.97238 0.85148 1.32848 0.90649 1.24756 0.96115 0.98380 1.01502 1.69806 1.04877 1.33864 1.48633 0.86007 0.77504 0.84603 0.77463 1.20625 1.21875 1.21770 1.21450 0.92852 0.88215 0.96610 0.92740 0.92159 0.92110 0.91315 0.88410 0.79575 0.80367 0.88279 0.91920 0.91011 0.92859 0.89435 0.87475 0.97235 0.93909 0.95091 0.96464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 8.07 37.16 0.30 -1.31 16 2 C 0.11 1.18 5.65 -4.04 -0.02 1.16 16 3 N -0.58 -8.88 2.54 -165.03 -0.42 -9.30 16 4 C 0.56 9.31 6.73 -12.20 -0.08 9.23 16 5 O -0.49 -10.07 12.74 5.35 0.07 -10.00 16 6 C 0.08 1.08 6.56 -82.86 -0.54 0.54 16 7 C 0.07 0.86 10.76 -17.02 -0.18 0.67 16 8 N -0.41 -4.72 10.48 -12.59 -0.13 -4.85 16 9 C 0.06 0.58 11.18 -17.04 -0.19 0.39 16 10 C 0.26 2.63 7.50 -16.95 -0.13 2.50 16 11 O -0.30 -2.51 10.49 -18.71 -0.20 -2.71 16 12 C 0.02 0.15 9.50 101.05 0.96 1.11 16 13 N -0.46 -5.19 3.29 -9.69 -0.03 -5.23 16 14 C 0.13 2.41 3.45 -66.10 -0.23 2.18 16 15 H 0.09 1.47 7.84 -51.93 -0.41 1.06 16 16 C -0.16 -3.26 6.40 -24.58 -0.16 -3.41 16 17 C 0.16 4.02 5.89 -2.53 -0.01 4.00 16 18 N -0.60 -16.09 3.39 -170.07 -0.58 -16.67 16 19 C -0.21 -6.28 10.27 -15.06 -0.15 -6.44 16 20 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 21 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 22 N -0.92 -27.79 10.09 55.49 0.56 -27.23 16 23 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 27 C 0.14 3.03 6.52 -3.07 -0.02 3.01 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.69 6.30 -51.93 -0.33 0.36 16 30 H 0.06 0.44 6.40 -51.93 -0.33 0.11 16 31 H 0.07 0.67 7.90 -51.93 -0.41 0.26 16 32 H 0.10 1.04 4.89 -51.93 -0.25 0.78 16 33 H 0.19 2.35 7.65 -52.49 -0.40 1.95 16 34 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.37 7.56 -51.93 -0.39 -0.02 16 37 H 0.07 0.46 5.17 -51.93 -0.27 0.20 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.09 1.95 5.63 -51.92 -0.29 1.65 16 40 H 0.11 3.09 5.87 -51.93 -0.30 2.79 16 41 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.03 0.74 6.44 -51.93 -0.33 0.41 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 344.40 15.07 5.19 5.19 Total: -1.00 -33.70 344.40 -6.93 -40.63 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -5.81 Total: -0.88 kcal Atomic # 6 Polarization: 13.73 SS G_CDS: -0.56 Total: 13.17 kcal Atomic # 7 Polarization: -62.68 SS G_CDS: -0.60 Total: -63.28 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.13 Total: -12.70 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.70 -6.93 -40.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033976476.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.694 kcal (2) G-P(sol) polarization free energy of solvation -33.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds