Wall clock time and date at job start Tue Mar 31 2020 13:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.47148 * 2 1 4 4 C 1.34773 * 120.00097 * 80.89062 * 3 2 1 5 5 O 1.21673 * 119.99747 * 180.21065 * 4 3 2 6 6 C 1.46812 * 120.00055 * 0.21121 * 4 3 2 7 7 C 1.36353 * 125.84844 * 170.08697 * 6 4 3 8 8 C 1.41301 * 107.00845 * 179.97438 * 7 6 4 9 9 C 1.47392 * 126.45783 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99633 * 180.02562 * 9 8 7 11 11 O 1.21607 * 120.00543 * 0.02562 * 9 8 7 12 12 C 1.38199 * 107.07659 * 0.02562 * 8 7 6 13 13 N 1.34265 * 108.40033 * 359.76448 * 12 8 7 14 14 H 0.96998 * 125.39680 * 180.26694 * 13 12 8 15 15 C 1.46503 * 119.99712 * 260.89823 * 3 2 1 16 16 H 1.09000 * 110.88806 * 356.11032 * 15 3 2 17 17 C 1.55153 * 111.00508 * 119.99663 * 15 3 2 18 18 C 1.54330 * 102.94094 * 153.57454 * 17 15 3 19 19 N 1.47018 * 107.26856 * 337.80531 * 18 17 15 20 20 C 1.36942 * 125.64656 * 178.98830 * 19 18 17 21 21 H 1.07991 * 120.00393 * 179.97438 * 20 19 18 22 22 C 1.38814 * 119.99802 * 359.97218 * 20 19 18 23 23 N 1.31625 * 120.00124 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99901 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47028 * 90.00311 * 24 22 20 26 26 H 1.48500 * 109.46917 * 210.00314 * 24 22 20 27 27 H 1.48497 * 109.46885 * 330.00279 * 24 22 20 28 28 C 1.47418 * 108.70856 * 358.94163 * 19 18 17 29 29 H 1.09003 * 109.47136 * 299.99605 * 1 2 3 30 30 H 1.08998 * 109.47481 * 60.00227 * 1 2 3 31 31 H 1.09006 * 109.47079 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47272 * 239.99856 * 2 1 3 33 33 H 1.08998 * 109.47481 * 119.99773 * 2 1 3 34 34 H 1.08004 * 126.49184 * 359.93067 * 7 6 4 35 35 H 0.96999 * 120.00231 * 0.02562 * 10 9 8 36 36 H 0.97004 * 119.99692 * 180.02562 * 10 9 8 37 37 H 1.08005 * 125.80080 * 180.02562 * 12 8 7 38 38 H 1.09005 * 110.72300 * 271.93544 * 17 15 3 39 39 H 1.09000 * 110.72181 * 35.20981 * 17 15 3 40 40 H 1.09002 * 109.88174 * 97.22736 * 18 17 15 41 41 H 1.09000 * 109.87819 * 218.38766 * 18 17 15 42 42 H 0.96999 * 119.99721 * 180.02562 * 23 22 20 43 43 H 1.09001 * 110.36733 * 265.29436 * 28 19 18 44 44 H 1.08998 * 110.36978 * 142.96447 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0687 2.0782 1.1524 5 8 2.4707 3.2266 1.1518 6 6 1.6386 1.4517 2.4086 7 6 1.8132 1.9672 3.6588 8 6 1.2523 1.0433 4.5689 9 6 1.2068 1.1767 6.0361 10 7 0.6369 0.2105 6.7831 11 8 1.6834 2.1585 6.5725 12 6 0.7543 -0.0088 3.8240 13 7 0.9851 0.2444 2.5258 14 1 0.7330 -0.3319 1.7874 15 6 2.4517 2.0049 -1.2528 16 1 2.4134 1.2912 -2.0758 17 6 1.6035 3.2649 -1.5694 18 6 2.5597 4.1183 -2.4290 19 7 3.9292 3.6761 -2.1281 20 6 5.0713 4.1711 -2.6991 21 1 6.0343 3.7780 -2.4087 22 6 4.9910 5.1781 -3.6511 23 7 3.8173 5.6576 -4.0047 24 14 6.5489 5.8529 -4.4305 25 1 6.8728 5.0681 -5.6488 26 1 6.3414 7.2763 -4.7992 27 1 7.6707 5.7506 -3.4629 28 6 3.8695 2.6124 -1.1092 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.2906 2.9039 3.9064 35 1 0.2570 -0.5728 6.3553 36 1 0.6066 0.2984 7.7487 37 1 0.2595 -0.8839 4.2187 38 1 0.7113 2.9970 -2.1354 39 1 1.3364 3.7904 -0.6525 40 1 2.3444 3.9647 -3.4865 41 1 2.4461 5.1721 -2.1748 42 1 3.7613 6.3610 -4.6702 43 1 4.0024 3.0338 -0.1127 44 1 4.6284 1.8552 -1.3062 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034000142.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:37 Heat of formation + Delta-G solvation = 40.112643 kcal Electronic energy + Delta-G solvation = -27436.994793 eV Core-core repulsion = 23585.536755 eV Total energy + Delta-G solvation = -3851.458038 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.08084 -39.79329 -38.87056 -36.77828 -35.97971 -33.88005 -32.62878 -31.53970 -30.40278 -29.80741 -28.88824 -27.01854 -24.65243 -24.09886 -23.57649 -22.24375 -20.91261 -20.16894 -20.01812 -19.59557 -17.92571 -17.14068 -16.96278 -16.82918 -16.05908 -15.64789 -15.35216 -14.74285 -14.54357 -14.41833 -14.25475 -13.98865 -13.76404 -13.55807 -13.32660 -13.25281 -12.86874 -12.54906 -12.25892 -12.17890 -12.11489 -11.75006 -11.60977 -10.85881 -10.83742 -10.71697 -10.37095 -10.25438 -10.04902 -9.92890 -9.90618 -9.60524 -9.29955 -9.28604 -8.70223 -8.50602 -8.39802 -6.69608 -5.62021 -2.94468 1.25858 1.68881 2.70806 2.94115 3.22534 3.41878 3.45941 3.48969 3.51199 3.53668 4.29306 4.40029 4.48431 4.58776 4.63737 4.71011 4.84916 5.02265 5.15974 5.26736 5.41989 5.45225 5.58395 5.63820 5.74358 5.79882 5.81380 5.88094 6.10512 6.25624 6.47782 6.50069 6.57902 6.60123 6.68288 6.73637 6.92483 7.16222 7.19822 7.47812 7.64854 7.74184 7.91400 8.15187 8.28494 8.35869 9.31335 9.91662 10.58224 11.49838 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021707 B = 0.002970 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.589094 B = 9425.599785 C =10248.063374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.086 3.914 3 N -0.603 5.603 4 C 0.581 3.419 5 O -0.493 6.493 6 C -0.048 4.048 7 C -0.049 4.049 8 C -0.237 4.237 9 C 0.593 3.407 10 N -0.857 5.857 11 O -0.543 6.543 12 C 0.056 3.944 13 N -0.534 5.534 14 H 0.430 0.570 15 C 0.132 3.868 16 H 0.093 0.907 17 C -0.153 4.153 18 C 0.185 3.815 19 N -0.601 5.601 20 C -0.222 4.222 21 H 0.077 0.923 22 C -0.010 4.010 23 N -0.923 5.923 24 Si 0.912 3.088 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.123 3.877 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.159 0.841 35 H 0.397 0.603 36 H 0.402 0.598 37 H 0.178 0.822 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.044 0.956 41 H 0.043 0.957 42 H 0.251 0.749 43 H 0.051 0.949 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.548 -20.698 14.559 28.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.038 4.038 3 N -0.336 5.336 4 C 0.368 3.632 5 O -0.367 6.367 6 C -0.159 4.159 7 C -0.074 4.074 8 C -0.248 4.248 9 C 0.380 3.620 10 N -0.421 5.421 11 O -0.420 6.420 12 C -0.086 4.086 13 N -0.140 5.140 14 H 0.280 0.720 15 C 0.029 3.971 16 H 0.111 0.889 17 C -0.192 4.192 18 C 0.060 3.940 19 N -0.328 5.328 20 C -0.351 4.351 21 H 0.095 0.905 22 C -0.206 4.206 23 N -0.571 5.571 24 Si 0.743 3.257 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 C -0.004 4.004 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.177 0.823 35 H 0.225 0.775 36 H 0.233 0.767 37 H 0.195 0.805 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -11.909 -19.244 14.340 26.792 hybrid contribution 0.275 -0.507 -0.588 0.824 sum -11.634 -19.751 13.752 26.732 Atomic orbital electron populations 1.22657 0.96017 1.02917 1.04444 1.21893 0.94127 0.84107 1.03667 1.47887 1.64699 1.12856 1.08184 1.17072 0.78839 0.85775 0.81485 1.90929 1.44748 1.15995 1.84993 1.20351 1.09813 0.89757 0.96008 1.21119 0.98096 0.99317 0.88889 1.19580 1.13483 0.98882 0.92841 1.17442 0.76595 0.82058 0.85878 1.43678 1.63442 1.24033 1.10921 1.90841 1.46833 1.30669 1.73702 1.22419 1.02397 1.00040 0.83761 1.43481 1.43858 1.18079 1.08583 0.71962 1.22504 0.97100 0.94704 0.82832 0.88899 1.23245 0.98225 0.96458 1.01286 1.21058 0.81651 0.95669 0.95637 1.44309 1.02880 1.40608 1.45027 1.19050 0.84938 1.14874 1.16219 0.90527 1.24793 0.96945 0.99129 0.99769 1.69969 1.21471 1.30598 1.35089 0.86109 0.82315 0.78157 0.79152 1.21740 1.21705 1.20714 1.21943 0.92068 0.91323 0.95066 0.91697 0.90041 0.90700 0.88539 0.90915 0.82350 0.77533 0.76699 0.80526 0.92685 0.90836 0.93747 0.93855 0.93857 0.93158 0.95007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.28 8.74 37.15 0.32 -0.96 16 2 C 0.09 0.72 5.70 -4.04 -0.02 0.70 16 3 N -0.60 -8.38 2.59 -165.15 -0.43 -8.81 16 4 C 0.58 9.37 6.84 -12.80 -0.09 9.28 16 5 O -0.49 -10.34 12.91 5.21 0.07 -10.27 16 6 C -0.05 -0.62 6.35 -82.40 -0.52 -1.14 16 7 C -0.05 -0.67 10.38 -39.10 -0.41 -1.08 16 8 C -0.24 -2.54 6.13 -105.02 -0.64 -3.18 16 9 C 0.59 6.63 8.09 -12.53 -0.10 6.53 16 10 N -0.86 -4.93 8.86 30.42 0.27 -4.66 16 11 O -0.54 -8.76 17.76 5.27 0.09 -8.66 16 12 C 0.06 0.37 11.43 -16.50 -0.19 0.18 16 13 N -0.53 -4.23 3.95 -9.30 -0.04 -4.27 16 14 H 0.43 2.37 3.27 -40.82 -0.13 2.23 16 15 C 0.13 2.32 3.56 -65.78 -0.23 2.08 16 16 H 0.09 1.48 7.75 -51.93 -0.40 1.07 16 17 C -0.15 -3.05 6.33 -24.90 -0.16 -3.21 16 18 C 0.18 4.74 5.37 -3.06 -0.02 4.72 16 19 N -0.60 -16.23 3.39 -170.07 -0.58 -16.81 16 20 C -0.22 -6.49 10.28 -15.06 -0.15 -6.64 16 21 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 22 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 23 N -0.92 -28.08 10.31 55.49 0.57 -27.51 16 24 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 27 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 28 C 0.12 2.74 6.58 -2.53 -0.02 2.73 16 29 H 0.06 0.46 6.02 -51.93 -0.31 0.15 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.10 0.69 7.76 -51.93 -0.40 0.29 16 33 H 0.07 0.49 5.45 -51.93 -0.28 0.21 16 34 H 0.16 2.46 8.06 -52.48 -0.42 2.04 16 35 H 0.40 0.83 7.74 -40.82 -0.32 0.52 16 36 H 0.40 1.91 8.93 -40.82 -0.36 1.55 16 37 H 0.18 0.24 7.44 -52.48 -0.39 -0.15 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.07 1.57 6.24 -51.93 -0.32 1.24 16 40 H 0.04 1.22 7.38 -51.93 -0.38 0.83 16 41 H 0.04 1.26 7.50 -51.93 -0.39 0.87 16 42 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.05 1.23 5.54 -51.93 -0.29 0.94 16 44 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 349.70 15.07 5.27 5.27 Total: -1.00 -39.31 349.70 -7.77 -47.07 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -5.65 Total: 1.18 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: -2.32 Total: 9.60 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: -0.20 Total: -62.05 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: 0.16 Total: -18.94 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -39.31 -7.77 -47.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034000142.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.187 kcal (2) G-P(sol) polarization free energy of solvation -39.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds