Wall clock time and date at job start Tue Mar 31 2020 13:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.47148 * 2 1 4 4 C 1.34773 * 120.00097 * 80.89062 * 3 2 1 5 5 O 1.21673 * 119.99747 * 180.21065 * 4 3 2 6 6 C 1.46812 * 120.00055 * 0.21121 * 4 3 2 7 7 C 1.36353 * 125.84844 * 170.08697 * 6 4 3 8 8 C 1.41301 * 107.00845 * 179.97438 * 7 6 4 9 9 C 1.47392 * 126.45783 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99633 * 180.02562 * 9 8 7 11 11 O 1.21607 * 120.00543 * 0.02562 * 9 8 7 12 12 C 1.38199 * 107.07659 * 0.02562 * 8 7 6 13 13 N 1.34265 * 108.40033 * 359.76448 * 12 8 7 14 14 H 0.96998 * 125.39680 * 180.26694 * 13 12 8 15 15 C 1.46503 * 119.99712 * 260.89823 * 3 2 1 16 16 H 1.09000 * 110.88806 * 356.11032 * 15 3 2 17 17 C 1.55153 * 111.00508 * 119.99663 * 15 3 2 18 18 C 1.54330 * 102.94094 * 153.57454 * 17 15 3 19 19 N 1.47018 * 107.26856 * 337.80531 * 18 17 15 20 20 C 1.36942 * 125.64656 * 178.98830 * 19 18 17 21 21 H 1.07991 * 120.00393 * 179.97438 * 20 19 18 22 22 C 1.38814 * 119.99802 * 359.97218 * 20 19 18 23 23 N 1.31625 * 120.00124 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99901 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47028 * 90.00311 * 24 22 20 26 26 H 1.48500 * 109.46917 * 210.00314 * 24 22 20 27 27 H 1.48497 * 109.46885 * 330.00279 * 24 22 20 28 28 C 1.47418 * 108.70856 * 358.94163 * 19 18 17 29 29 H 1.09003 * 109.47136 * 299.99605 * 1 2 3 30 30 H 1.08998 * 109.47481 * 60.00227 * 1 2 3 31 31 H 1.09006 * 109.47079 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47272 * 239.99856 * 2 1 3 33 33 H 1.08998 * 109.47481 * 119.99773 * 2 1 3 34 34 H 1.08004 * 126.49184 * 359.93067 * 7 6 4 35 35 H 0.96999 * 120.00231 * 0.02562 * 10 9 8 36 36 H 0.97004 * 119.99692 * 180.02562 * 10 9 8 37 37 H 1.08005 * 125.80080 * 180.02562 * 12 8 7 38 38 H 1.09005 * 110.72300 * 271.93544 * 17 15 3 39 39 H 1.09000 * 110.72181 * 35.20981 * 17 15 3 40 40 H 1.09002 * 109.88174 * 97.22736 * 18 17 15 41 41 H 1.09000 * 109.87819 * 218.38766 * 18 17 15 42 42 H 0.96999 * 119.99721 * 180.02562 * 23 22 20 43 43 H 1.09001 * 110.36733 * 265.29436 * 28 19 18 44 44 H 1.08998 * 110.36978 * 142.96447 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0687 2.0782 1.1524 5 8 2.4707 3.2266 1.1518 6 6 1.6386 1.4517 2.4086 7 6 1.8132 1.9672 3.6588 8 6 1.2523 1.0433 4.5689 9 6 1.2068 1.1767 6.0361 10 7 0.6369 0.2105 6.7831 11 8 1.6834 2.1585 6.5725 12 6 0.7543 -0.0088 3.8240 13 7 0.9851 0.2444 2.5258 14 1 0.7330 -0.3319 1.7874 15 6 2.4517 2.0049 -1.2528 16 1 2.4134 1.2912 -2.0758 17 6 1.6035 3.2649 -1.5694 18 6 2.5597 4.1183 -2.4290 19 7 3.9292 3.6761 -2.1281 20 6 5.0713 4.1711 -2.6991 21 1 6.0343 3.7780 -2.4087 22 6 4.9910 5.1781 -3.6511 23 7 3.8173 5.6576 -4.0047 24 14 6.5489 5.8529 -4.4305 25 1 6.8728 5.0681 -5.6488 26 1 6.3414 7.2763 -4.7992 27 1 7.6707 5.7506 -3.4629 28 6 3.8695 2.6124 -1.1092 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.2906 2.9039 3.9064 35 1 0.2570 -0.5728 6.3553 36 1 0.6066 0.2984 7.7487 37 1 0.2595 -0.8839 4.2187 38 1 0.7113 2.9970 -2.1354 39 1 1.3364 3.7904 -0.6525 40 1 2.3444 3.9647 -3.4865 41 1 2.4461 5.1721 -2.1748 42 1 3.7613 6.3610 -4.6702 43 1 4.0024 3.0338 -0.1127 44 1 4.6284 1.8552 -1.3062 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034000142.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:36 Heat of formation + Delta-G solvation = 7.934435 kcal Electronic energy + Delta-G solvation = -27438.390145 eV Core-core repulsion = 23585.536755 eV Total energy + Delta-G solvation = -3852.853390 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.95149 -40.98587 -39.80972 -38.43060 -37.16910 -34.68972 -34.41155 -32.70322 -31.48355 -30.97183 -30.46728 -28.64215 -26.56121 -25.11952 -24.31696 -23.28452 -22.19187 -21.97107 -21.13169 -20.47878 -19.06192 -18.76471 -17.93997 -17.73478 -17.13721 -16.85299 -16.65912 -16.40762 -15.83052 -15.69579 -15.35189 -15.11046 -14.75947 -14.68869 -14.52899 -14.36895 -14.14530 -13.92784 -13.66334 -13.46654 -13.33032 -13.01286 -12.84593 -12.76409 -12.34596 -12.29744 -12.10518 -12.05004 -11.85380 -11.59537 -11.20581 -10.77898 -10.72934 -10.61725 -10.16547 -9.81671 -9.35861 -8.87556 -7.86348 -5.22302 0.41146 0.78277 1.42695 1.46552 1.55006 1.72953 2.05512 2.20301 2.48955 2.58473 2.76432 3.30559 3.45280 3.67707 3.77375 3.86849 3.90125 4.01777 4.05700 4.13277 4.20875 4.29670 4.36326 4.53861 4.66847 4.72857 4.75665 4.85373 4.89446 4.92929 4.99419 5.08050 5.28786 5.38414 5.40682 5.54473 5.63175 5.65542 5.72000 6.00166 6.17203 6.29942 6.38617 6.64037 7.07246 7.11054 7.49054 7.74702 8.40273 9.24263 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021707 B = 0.002970 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.589094 B = 9425.599785 C =10248.063374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.075 3.925 3 N -0.597 5.597 4 C 0.575 3.425 5 O -0.561 6.561 6 C -0.064 4.064 7 C -0.076 4.076 8 C -0.267 4.267 9 C 0.589 3.411 10 N -0.826 5.826 11 O -0.609 6.609 12 C 0.118 3.882 13 N -0.513 5.513 14 H 0.445 0.555 15 C 0.155 3.845 16 H 0.124 0.876 17 C -0.137 4.137 18 C 0.195 3.805 19 N -0.623 5.623 20 C -0.244 4.244 21 H 0.079 0.921 22 C -0.068 4.068 23 N -0.952 5.952 24 Si 0.983 3.017 25 H -0.278 1.278 26 H -0.294 1.294 27 H -0.273 1.273 28 C 0.117 3.883 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.096 0.904 34 H 0.118 0.882 35 H 0.419 0.581 36 H 0.411 0.589 37 H 0.249 0.751 38 H 0.088 0.912 39 H 0.054 0.946 40 H 0.022 0.978 41 H -0.008 1.008 42 H 0.247 0.753 43 H 0.025 0.975 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.342 -25.996 14.993 33.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.047 4.047 3 N -0.328 5.328 4 C 0.365 3.635 5 O -0.439 6.439 6 C -0.175 4.175 7 C -0.103 4.103 8 C -0.277 4.277 9 C 0.377 3.623 10 N -0.390 5.390 11 O -0.492 6.492 12 C -0.026 4.026 13 N -0.120 5.120 14 H 0.300 0.700 15 C 0.050 3.950 16 H 0.142 0.858 17 C -0.176 4.176 18 C 0.069 3.931 19 N -0.349 5.349 20 C -0.373 4.373 21 H 0.097 0.903 22 C -0.261 4.261 23 N -0.602 5.602 24 Si 0.811 3.189 25 H -0.204 1.204 26 H -0.221 1.221 27 H -0.198 1.198 28 C -0.009 4.009 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.113 0.887 34 H 0.136 0.864 35 H 0.252 0.748 36 H 0.242 0.758 37 H 0.265 0.735 38 H 0.107 0.893 39 H 0.073 0.927 40 H 0.041 0.959 41 H 0.010 0.990 42 H 0.057 0.943 43 H 0.043 0.957 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -13.759 -24.696 14.774 31.898 hybrid contribution 0.795 1.056 -0.609 1.456 sum -12.964 -23.639 14.165 30.455 Atomic orbital electron populations 1.22646 0.93910 1.05567 1.03487 1.22385 0.95798 0.80615 1.05908 1.47878 1.63987 1.14921 1.06027 1.17575 0.77827 0.85171 0.82941 1.90897 1.47829 1.19068 1.86110 1.19594 1.12213 0.92037 0.93693 1.21025 0.99201 0.99126 0.90937 1.19578 1.15431 0.99969 0.92704 1.17614 0.76299 0.82046 0.86331 1.43374 1.61255 1.23244 1.11154 1.90813 1.50049 1.33567 1.74754 1.23353 0.97706 0.99488 0.82056 1.43379 1.42504 1.16256 1.09871 0.70031 1.22119 0.93011 0.94426 0.85418 0.85791 1.23014 0.98302 0.96632 0.99674 1.20779 0.82861 0.94097 0.95361 1.44625 1.02800 1.41892 1.45607 1.19453 0.86017 1.15363 1.16436 0.90269 1.25716 1.00326 0.99505 1.00559 1.70204 1.23596 1.30885 1.35466 0.85010 0.78496 0.76977 0.78426 1.20397 1.22059 1.19782 1.22036 0.95812 0.90508 0.92526 0.92409 0.91394 0.86105 0.86413 0.88669 0.86411 0.74828 0.75766 0.73524 0.89344 0.92714 0.95938 0.98968 0.94339 0.95688 0.94058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.49 8.74 71.98 0.63 -0.86 16 2 C 0.07 0.91 5.70 86.38 0.49 1.40 16 3 N -0.60 -15.75 2.59 -794.64 -2.06 -17.81 16 4 C 0.57 19.03 6.84 86.49 0.59 19.62 16 5 O -0.56 -25.58 12.91 -4.26 -0.06 -25.64 16 6 C -0.06 -1.61 6.35 40.01 0.25 -1.36 16 7 C -0.08 -2.22 10.38 22.58 0.23 -1.98 16 8 C -0.27 -5.24 6.13 -20.12 -0.12 -5.37 16 9 C 0.59 12.55 8.09 86.65 0.70 13.25 16 10 N -0.83 -6.68 8.86 -175.91 -1.56 -8.24 16 11 O -0.61 -20.60 17.76 -4.05 -0.07 -20.67 16 12 C 0.12 0.88 11.43 84.31 0.96 1.85 16 13 N -0.51 -5.85 3.95 -183.35 -0.72 -6.57 16 14 H 0.45 2.25 3.27 -92.71 -0.30 1.94 16 15 C 0.15 5.34 3.56 46.38 0.16 5.51 16 16 H 0.12 3.58 7.75 -2.39 -0.02 3.56 16 17 C -0.14 -5.61 6.33 31.78 0.20 -5.41 16 18 C 0.19 10.55 5.37 86.73 0.47 11.02 16 19 N -0.62 -35.18 3.39 -691.99 -2.35 -37.53 16 20 C -0.24 -14.76 10.28 84.03 0.86 -13.90 16 21 H 0.08 4.60 7.83 -2.92 -0.02 4.58 16 22 C -0.07 -4.14 5.49 84.86 0.47 -3.67 16 23 N -0.95 -60.60 10.31 21.65 0.22 -60.37 16 24 Si 0.98 48.32 29.55 68.60 2.03 50.35 16 25 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 26 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 27 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 28 C 0.12 5.41 6.58 86.86 0.57 5.98 16 29 H 0.06 0.55 6.02 -2.39 -0.01 0.53 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.12 -0.12 8.14 -2.38 -0.02 -0.14 16 32 H 0.12 1.04 7.76 -2.39 -0.02 1.02 16 33 H 0.10 0.76 5.45 -2.39 -0.01 0.75 16 34 H 0.12 4.28 8.06 -2.91 -0.02 4.25 16 35 H 0.42 -0.63 7.74 -92.71 -0.72 -1.35 16 36 H 0.41 2.74 8.93 -92.71 -0.83 1.91 16 37 H 0.25 -1.67 7.44 -2.91 -0.02 -1.70 16 38 H 0.09 3.00 8.14 -2.38 -0.02 2.98 16 39 H 0.05 2.47 6.24 -2.39 -0.01 2.45 16 40 H 0.02 1.30 7.38 -2.39 -0.02 1.28 16 41 H -0.01 -0.50 7.50 -2.39 -0.02 -0.52 16 42 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 43 H 0.03 1.31 5.54 -2.39 -0.01 1.30 16 44 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -100.03 349.70 1.14 -98.89 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -0.77 Total: 1.52 kcal Atomic # 6 Polarization: 19.59 SS G_CDS: 6.48 Total: 26.07 kcal Atomic # 7 Polarization: -124.06 SS G_CDS: -6.47 Total: -130.52 kcal Atomic # 8 Polarization: -46.18 SS G_CDS: -0.13 Total: -46.31 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 2.03 Total: 50.35 kcal Total: -100.03 1.14 -98.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034000142.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.828 kcal (2) G-P(sol) polarization free energy of solvation -100.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds