Wall clock time and date at job start Tue Mar 31 2020 13:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46822 * 2 1 4 4 C 1.34774 * 119.99894 * 253.47594 * 3 2 1 5 5 O 1.21579 * 119.99786 * 185.27934 * 4 3 2 6 6 C 1.47624 * 120.00348 * 5.28021 * 4 3 2 7 7 C 1.40059 * 120.88315 * 26.45725 * 6 4 3 8 8 N 1.32009 * 118.98938 * 179.71703 * 7 6 4 9 9 C 1.32466 * 120.91692 * 0.56447 * 8 7 6 10 10 O 1.35297 * 119.02162 * 179.72787 * 9 8 7 11 11 C 1.42892 * 117.00247 * 359.97438 * 10 9 8 12 12 N 1.32472 * 121.95755 * 359.70506 * 9 8 7 13 13 C 1.32019 * 120.91197 * 359.97438 * 12 9 8 14 14 C 1.46503 * 119.99882 * 73.48083 * 3 2 1 15 15 H 1.09003 * 110.77611 * 5.35487 * 14 3 2 16 16 C 1.55154 * 110.71673 * 242.11587 * 14 3 2 17 17 C 1.54908 * 101.58224 * 277.13579 * 16 14 3 18 18 N 1.47421 * 104.83311 * 322.99387 * 17 16 14 19 19 C 1.36939 * 125.64984 * 204.09110 * 18 17 16 20 20 H 1.08004 * 120.00235 * 172.13732 * 19 18 17 21 21 C 1.38811 * 119.99860 * 352.13318 * 19 18 17 22 22 N 1.31619 * 120.00061 * 4.13322 * 21 19 18 23 23 Si 1.86802 * 119.99856 * 184.12702 * 21 19 18 24 24 H 1.48497 * 109.47283 * 95.00084 * 23 21 19 25 25 H 1.48501 * 109.46955 * 215.00189 * 23 21 19 26 26 H 1.48496 * 109.47385 * 334.99910 * 23 21 19 27 27 C 1.47024 * 108.70490 * 24.12583 * 18 17 16 28 28 H 1.08990 * 109.47587 * 59.99751 * 1 2 3 29 29 H 1.09002 * 109.46726 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47007 * 299.99368 * 1 2 3 31 31 H 1.09007 * 109.47007 * 240.00632 * 2 1 3 32 32 H 1.08990 * 109.47587 * 120.00249 * 2 1 3 33 33 H 1.08004 * 120.49902 * 359.97438 * 7 6 4 34 34 H 1.09004 * 109.47436 * 300.00439 * 11 10 9 35 35 H 1.09004 * 109.46861 * 60.00241 * 11 10 9 36 36 H 1.08997 * 109.47247 * 179.97438 * 11 10 9 37 37 H 1.07998 * 120.50285 * 179.97438 * 13 12 9 38 38 H 1.09003 * 110.99996 * 159.06409 * 16 14 3 39 39 H 1.08999 * 111.04194 * 35.23035 * 16 14 3 40 40 H 1.09001 * 110.36725 * 204.15345 * 17 16 14 41 41 H 1.08998 * 110.45837 * 81.87935 * 17 16 14 42 42 H 0.97001 * 120.00139 * 179.97438 * 22 21 19 43 43 H 1.09003 * 109.88371 * 118.35704 * 27 18 17 44 44 H 1.08998 * 109.88639 * 239.52293 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.5558 1.9060 -1.1190 5 8 3.0479 3.0174 -1.0935 6 6 2.5472 1.1312 -2.3755 7 6 1.5693 0.1569 -2.6127 8 7 1.5935 -0.5099 -3.7517 9 6 2.5313 -0.2758 -4.6576 10 8 2.5230 -0.9856 -5.8094 11 6 1.4843 -1.9541 -5.9672 12 7 3.4767 0.6328 -4.4694 13 6 3.5197 1.3471 -3.3600 14 6 1.9223 2.1921 1.2164 15 1 1.5540 1.5953 2.0509 16 6 1.0137 3.4278 0.9820 17 6 2.0021 4.4194 0.3192 18 7 3.2858 4.1889 1.0066 19 6 4.3082 5.0937 1.1124 20 1 5.1577 4.8773 1.7434 21 6 4.2529 6.2889 0.4086 22 7 3.1823 6.5889 -0.2958 23 14 5.6979 7.4715 0.4614 24 1 6.5768 7.2319 -0.7113 25 1 5.1956 8.8686 0.4263 26 1 6.4699 7.2544 1.7112 27 6 3.2868 2.8263 1.5590 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 0.8046 -0.0427 -1.8766 34 1 1.5518 -2.6928 -5.1685 35 1 0.5148 -1.4578 -5.9220 36 1 1.5934 -2.4502 -6.9316 37 1 4.2937 2.0859 -3.2133 38 1 0.6393 3.8221 1.9267 39 1 0.1914 3.1868 0.3084 40 1 1.6691 5.4460 0.4718 41 1 2.0984 4.2069 -0.7455 42 1 3.1435 7.4242 -0.7873 43 1 4.0901 2.2439 1.1076 44 1 3.4166 2.8648 2.6405 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034004228.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:14 Heat of formation + Delta-G solvation = 64.374393 kcal Electronic energy + Delta-G solvation = -28416.740471 eV Core-core repulsion = 24566.334501 eV Total energy + Delta-G solvation = -3850.405970 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.69577 -41.32088 -39.44821 -37.84177 -37.19813 -35.07984 -34.26756 -32.54252 -31.57105 -30.65916 -28.96933 -28.43477 -26.44457 -25.84919 -25.42593 -23.98880 -22.65626 -21.96726 -20.10695 -20.02944 -19.26320 -18.72318 -18.09574 -17.57854 -16.95465 -16.92725 -16.61744 -16.42847 -15.86009 -15.59250 -15.50829 -15.21340 -14.91910 -14.32462 -14.01724 -13.74813 -13.55436 -13.39963 -13.24250 -13.06101 -12.91560 -12.83784 -12.80104 -12.56916 -12.54054 -12.24143 -12.16451 -11.96719 -11.90754 -11.66180 -11.46443 -11.24188 -10.80593 -10.46648 -10.22242 -10.08111 -9.33361 -8.43505 -7.65787 -4.98664 -0.55139 -0.19740 1.42441 1.44093 1.47418 1.54804 1.87043 2.03268 2.56890 2.59977 2.78668 3.32034 3.44862 3.47464 3.56940 3.81525 3.92977 3.99336 4.01389 4.26349 4.36097 4.37128 4.39759 4.40265 4.51376 4.58348 4.69825 4.80031 4.83731 4.88045 4.99001 5.04019 5.11277 5.12825 5.24089 5.42979 5.48399 5.55504 5.81455 5.89421 5.93954 6.21203 6.45530 6.57700 6.79177 7.27435 7.52981 8.00747 8.65313 9.39155 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015765 B = 0.004189 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.680402 B = 6682.263136 C = 7985.799269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.081 3.919 3 N -0.597 5.597 4 C 0.516 3.484 5 O -0.484 6.484 6 C -0.272 4.272 7 C 0.207 3.793 8 N -0.561 5.561 9 C 0.498 3.502 10 O -0.302 6.302 11 C 0.036 3.964 12 N -0.550 5.550 13 C 0.233 3.767 14 C 0.156 3.844 15 H 0.137 0.863 16 C -0.144 4.144 17 C 0.155 3.845 18 N -0.599 5.599 19 C -0.224 4.224 20 H 0.069 0.931 21 C -0.066 4.066 22 N -0.940 5.940 23 Si 0.966 3.034 24 H -0.296 1.296 25 H -0.295 1.295 26 H -0.269 1.269 27 C 0.129 3.871 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.227 0.773 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.133 0.867 37 H 0.176 0.824 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.026 0.974 41 H 0.050 0.950 42 H 0.238 0.762 43 H 0.005 0.995 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.065 -22.747 -2.942 25.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.040 4.040 3 N -0.331 5.331 4 C 0.304 3.696 5 O -0.359 6.359 6 C -0.281 4.281 7 C 0.042 3.958 8 N -0.291 5.291 9 C 0.197 3.803 10 O -0.202 6.202 11 C -0.059 4.059 12 N -0.276 5.276 13 C 0.068 3.932 14 C 0.053 3.947 15 H 0.155 0.845 16 C -0.184 4.184 17 C 0.032 3.968 18 N -0.323 5.323 19 C -0.354 4.354 20 H 0.087 0.913 21 C -0.259 4.259 22 N -0.590 5.590 23 Si 0.796 3.204 24 H -0.224 1.224 25 H -0.222 1.222 26 H -0.194 1.194 27 C 0.002 3.998 28 H 0.075 0.925 29 H 0.119 0.881 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.120 0.880 33 H 0.243 0.757 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.151 0.849 37 H 0.193 0.807 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.044 0.956 41 H 0.067 0.933 42 H 0.047 0.953 43 H 0.022 0.978 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -9.591 -22.586 -4.167 24.890 hybrid contribution 1.008 1.668 0.446 1.999 sum -8.583 -20.918 -3.721 22.915 Atomic orbital electron populations 1.22361 0.93805 1.04516 1.03057 1.22380 0.95938 0.80880 1.04852 1.47738 1.61421 1.14242 1.09726 1.18132 0.82426 0.85628 0.83422 1.91165 1.41610 1.18010 1.85103 1.21659 1.02768 1.04397 0.99260 1.24788 0.94576 0.84899 0.91559 1.68264 1.25513 1.31180 1.04095 1.21207 0.85818 0.86965 0.86279 1.86071 1.53067 1.50166 1.30941 1.23390 0.88447 0.89221 1.04801 1.67674 1.26071 1.09503 1.24370 1.23268 0.94513 0.90973 0.84495 1.21947 0.94243 0.91767 0.86766 0.84497 1.23373 0.97680 0.96297 1.01038 1.22140 0.83252 0.95498 0.95954 1.44413 1.15478 1.09686 1.62746 1.19298 0.98418 0.96819 1.20913 0.91294 1.25474 1.00043 1.00385 0.99961 1.70205 1.28373 1.23793 1.36654 0.85226 0.79393 0.78239 0.77540 1.22411 1.22197 1.19354 1.21668 0.96000 0.86472 0.95614 0.92508 0.88050 0.90717 0.89381 0.88046 0.75711 0.90887 0.91391 0.84901 0.80735 0.90857 0.90585 0.95621 0.93324 0.95269 0.97751 0.95138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 9.10 71.98 0.66 -1.21 16 2 C 0.08 1.22 5.54 86.38 0.48 1.70 16 3 N -0.60 -15.99 2.54 -794.87 -2.02 -18.00 16 4 C 0.52 18.08 6.76 86.72 0.59 18.66 16 5 O -0.48 -23.22 9.90 -3.96 -0.04 -23.26 16 6 C -0.27 -8.06 5.51 -19.92 -0.11 -8.17 16 7 C 0.21 4.64 8.73 85.11 0.74 5.38 16 8 N -0.56 -13.17 9.19 -312.41 -2.87 -16.04 16 9 C 0.50 13.86 8.48 180.48 1.53 15.39 16 10 O -0.30 -7.27 10.55 -85.83 -0.91 -8.18 16 11 C 0.04 0.48 10.35 113.37 1.17 1.65 16 12 N -0.55 -17.70 10.45 -312.41 -3.26 -20.97 16 13 C 0.23 7.57 10.88 85.11 0.93 8.50 16 14 C 0.16 4.72 3.48 46.18 0.16 4.88 16 15 H 0.14 2.84 7.99 -2.39 -0.02 2.82 16 16 C -0.14 -5.19 6.60 31.98 0.21 -4.97 16 17 C 0.16 8.03 4.64 86.86 0.40 8.43 16 18 N -0.60 -32.20 2.45 -691.99 -1.69 -33.89 16 19 C -0.22 -13.45 10.26 84.03 0.86 -12.59 16 20 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 21 C -0.07 -4.01 5.49 84.86 0.47 -3.55 16 22 N -0.94 -60.30 10.25 21.65 0.22 -60.08 16 23 Si 0.97 49.21 29.56 68.60 2.03 51.24 16 24 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 25 H -0.30 -14.95 7.11 99.48 0.71 -14.25 16 26 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 27 C 0.13 5.38 6.08 86.73 0.53 5.90 16 28 H 0.06 0.70 6.72 -2.39 -0.02 0.68 16 29 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.07 0.81 8.04 -2.38 -0.02 0.79 16 31 H 0.09 1.31 4.31 -2.38 -0.01 1.30 16 32 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.23 3.56 2.74 -2.91 -0.01 3.55 16 34 H 0.07 0.86 8.09 -2.39 -0.02 0.84 16 35 H 0.07 0.88 8.09 -2.39 -0.02 0.86 16 36 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.18 5.97 7.95 -2.91 -0.02 5.95 16 38 H 0.07 2.49 8.14 -2.39 -0.02 2.48 16 39 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.03 1.55 6.29 -2.39 -0.02 1.54 16 41 H 0.05 2.86 4.67 -88.65 -0.41 2.45 16 42 H 0.24 14.95 8.31 -92.71 -0.77 14.18 16 43 H 0.00 0.20 7.73 -2.39 -0.02 0.19 16 44 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -83.00 345.69 0.70 -82.30 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: 0.63 Total: 6.85 kcal Atomic # 6 Polarization: 31.41 SS G_CDS: 8.61 Total: 40.02 kcal Atomic # 7 Polarization: -139.35 SS G_CDS: -9.62 Total: -148.98 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -0.94 Total: -31.44 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 2.03 Total: 51.24 kcal Total: -83.00 0.70 -82.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034004228.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.677 kcal (2) G-P(sol) polarization free energy of solvation -83.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds