Wall clock time and date at job start Tue Mar 31 2020 13:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47305 * 2 1 4 4 C 1.34769 * 120.00661 * 97.54726 * 3 2 1 5 5 O 1.21572 * 120.00558 * 185.65459 * 4 3 2 6 6 C 1.47635 * 119.99492 * 5.38013 * 4 3 2 7 7 C 1.40056 * 120.88272 * 315.32256 * 6 4 3 8 8 N 1.32019 * 118.98283 * 179.71777 * 7 6 4 9 9 C 1.32465 * 120.91630 * 0.56562 * 8 7 6 10 10 O 1.35300 * 119.01969 * 179.72827 * 9 8 7 11 11 C 1.42905 * 116.99892 * 359.97438 * 10 9 8 12 12 N 1.32463 * 121.95806 * 359.70358 * 9 8 7 13 13 C 1.32011 * 120.91699 * 0.02562 * 12 9 8 14 14 C 1.46502 * 119.99562 * 277.54979 * 3 2 1 15 15 H 1.09002 * 110.88914 * 359.29811 * 14 3 2 16 16 C 1.55157 * 111.00543 * 123.17885 * 14 3 2 17 17 C 1.54328 * 102.94449 * 153.57133 * 16 14 3 18 18 N 1.47017 * 107.26794 * 337.80996 * 17 16 14 19 19 C 1.36942 * 125.64270 * 178.97078 * 18 17 16 20 20 H 1.08002 * 120.00008 * 179.97438 * 19 18 17 21 21 C 1.38817 * 120.00145 * 359.97438 * 19 18 17 22 22 N 1.31619 * 119.99970 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99853 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47121 * 59.99912 * 23 21 19 25 25 H 1.48498 * 109.47148 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47081 * 299.99869 * 23 21 19 27 27 C 1.47466 * 108.72660 * 358.97357 * 18 17 16 28 28 H 1.08997 * 109.47108 * 189.17537 * 1 2 3 29 29 H 1.09002 * 109.47300 * 309.17744 * 1 2 3 30 30 H 1.09004 * 109.47177 * 69.16900 * 1 2 3 31 31 H 1.08995 * 109.47537 * 239.99948 * 2 1 3 32 32 H 1.09003 * 109.47333 * 119.99548 * 2 1 3 33 33 H 1.07995 * 120.50718 * 359.97438 * 7 6 4 34 34 H 1.09000 * 109.46686 * 180.02562 * 11 10 9 35 35 H 1.09001 * 109.47176 * 300.00040 * 11 10 9 36 36 H 1.09000 * 109.47009 * 59.99998 * 11 10 9 37 37 H 1.08001 * 120.50553 * 180.02562 * 13 12 9 38 38 H 1.09002 * 110.72179 * 271.94035 * 16 14 3 39 39 H 1.09006 * 110.72039 * 35.03305 * 16 14 3 40 40 H 1.09004 * 109.87895 * 97.22793 * 17 16 14 41 41 H 1.09000 * 109.88198 * 218.23308 * 17 16 14 42 42 H 0.96997 * 119.99877 * 180.02562 * 22 21 19 43 43 H 1.08996 * 110.34556 * 265.25375 * 27 18 17 44 44 H 1.08995 * 110.40629 * 142.91626 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3876 1.9656 1.1569 5 8 2.6947 3.1417 1.1731 6 6 2.4131 1.1788 2.4059 7 6 1.3594 0.3164 2.7340 8 7 1.4237 -0.3735 3.8577 9 6 2.4598 -0.2500 4.6739 10 8 2.4835 -0.9715 5.8182 11 6 1.3681 -1.8294 6.0675 12 7 3.4734 0.5584 4.4027 13 6 3.4889 1.2795 3.2971 14 6 2.1053 2.1273 -1.2578 15 1 1.7830 1.5120 -2.0978 16 6 1.2833 3.4411 -1.1832 17 6 1.9986 4.3548 -2.2005 18 7 3.3653 3.8386 -2.3652 19 6 4.3195 4.3580 -3.1989 20 1 5.2985 3.9046 -3.2479 21 6 4.0285 5.4673 -3.9810 22 7 2.8352 6.0196 -3.9217 23 14 5.3303 6.1762 -5.1177 24 1 5.7450 5.1430 -6.1005 25 1 4.7729 7.3488 -5.8384 26 1 6.5078 6.5998 -4.3183 27 6 3.5389 2.6689 -1.4841 28 1 -0.3633 -1.0145 0.1639 29 1 -0.3634 0.6492 0.7966 30 1 -0.3634 0.3655 -0.9605 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 0.5093 0.2144 2.0759 34 1 1.5133 -2.3478 7.0153 35 1 0.4559 -1.2348 6.1150 36 1 1.2844 -2.5596 5.2626 37 1 4.3190 1.9362 3.0824 38 1 0.2495 3.2667 -1.4816 39 1 1.3271 3.8670 -0.1807 40 1 1.4744 4.3275 -3.1559 41 1 2.0288 5.3771 -1.8235 42 1 2.6318 6.7945 -4.4685 43 1 3.9843 2.9711 -0.5363 44 1 4.1569 1.9146 -1.9712 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034004230.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:19 Heat of formation + Delta-G solvation = 39.520442 kcal Electronic energy + Delta-G solvation = -27524.778286 eV Core-core repulsion = 23673.294568 eV Total energy + Delta-G solvation = -3851.483718 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.76016 -40.10569 -38.55099 -36.80017 -35.87541 -34.17363 -32.63620 -31.59798 -30.56286 -29.02601 -28.12148 -27.06504 -25.00111 -24.85486 -24.16456 -23.35135 -21.31616 -20.03085 -19.35432 -19.18361 -18.34399 -17.31635 -16.84527 -16.79149 -15.98006 -15.60315 -15.09218 -14.90490 -14.52355 -14.45170 -14.36257 -14.14174 -13.79378 -13.23848 -13.20905 -12.94271 -12.40595 -12.26438 -12.23014 -12.07859 -11.90318 -11.80146 -11.71106 -11.44453 -11.15038 -10.87854 -10.83867 -10.69646 -10.37835 -10.08076 -9.92002 -9.62715 -9.58130 -9.37326 -9.17994 -8.59400 -8.41370 -6.73451 -5.64058 -2.97076 0.36709 0.67473 2.17746 2.67523 2.93915 3.41591 3.44963 3.49111 3.50469 3.59336 4.14125 4.26588 4.36207 4.56374 4.64567 4.71295 4.82262 4.86694 4.93018 5.09566 5.14792 5.33879 5.42903 5.45375 5.48037 5.51081 5.61863 5.70378 5.79880 5.87790 5.94872 6.18710 6.28155 6.49397 6.58625 6.63007 6.69758 6.74085 7.14120 7.45895 7.62850 7.65267 7.74184 7.90383 8.22179 8.33448 9.29031 9.89260 10.55750 11.47509 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027355 B = 0.002915 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.341647 B = 9603.313468 C =10163.296835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.566 3.434 5 O -0.501 6.501 6 C -0.271 4.271 7 C 0.204 3.796 8 N -0.569 5.569 9 C 0.507 3.493 10 O -0.287 6.287 11 C 0.043 3.957 12 N -0.523 5.523 13 C 0.241 3.759 14 C 0.132 3.868 15 H 0.094 0.906 16 C -0.156 4.156 17 C 0.185 3.815 18 N -0.601 5.601 19 C -0.225 4.225 20 H 0.076 0.924 21 C -0.009 4.009 22 N -0.922 5.922 23 Si 0.912 3.088 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.285 1.285 27 C 0.129 3.871 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.187 0.813 34 H 0.105 0.895 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.188 0.812 38 H 0.054 0.946 39 H 0.080 0.920 40 H 0.044 0.956 41 H 0.043 0.957 42 H 0.252 0.748 43 H 0.038 0.962 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.277 -18.196 15.001 24.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.029 4.029 3 N -0.328 5.328 4 C 0.352 3.648 5 O -0.375 6.375 6 C -0.279 4.279 7 C 0.039 3.961 8 N -0.298 5.298 9 C 0.206 3.794 10 O -0.187 6.187 11 C -0.053 4.053 12 N -0.248 5.248 13 C 0.074 3.926 14 C 0.029 3.971 15 H 0.112 0.888 16 C -0.195 4.195 17 C 0.060 3.940 18 N -0.328 5.328 19 C -0.354 4.354 20 H 0.094 0.906 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.743 3.257 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.002 3.998 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.204 0.796 34 H 0.123 0.877 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.205 0.795 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.905 -18.007 15.996 25.056 hybrid contribution 0.311 0.676 -1.433 1.615 sum -6.595 -17.330 14.562 23.577 Atomic orbital electron populations 1.22391 0.95687 1.02312 1.03390 1.21802 0.94549 0.83074 1.03505 1.47888 1.64114 1.13593 1.07192 1.17659 0.78270 0.86634 0.82282 1.90885 1.46689 1.14667 1.85285 1.21732 1.00463 1.05038 1.00694 1.23868 0.96544 0.85430 0.90303 1.68124 1.26497 1.28418 1.06798 1.20961 0.85536 0.87105 0.85818 1.86076 1.45339 1.53882 1.33432 1.23051 0.87294 0.92640 1.02287 1.67704 1.26299 1.09643 1.21146 1.23324 0.95537 0.89508 0.84183 1.22463 0.99037 0.92736 0.82860 0.88772 1.23304 0.97705 0.95836 1.02695 1.21051 0.83900 0.94519 0.94532 1.44316 1.11009 1.30514 1.46944 1.18996 0.92460 1.09005 1.14891 0.90589 1.24793 0.97047 0.98374 1.00299 1.69958 1.19544 1.24233 1.43275 0.86196 0.80654 0.78400 0.80489 1.21251 1.21644 1.21200 1.21810 0.92797 0.90231 0.95004 0.91053 0.92025 0.91013 0.89723 0.90553 0.79641 0.87710 0.91672 0.91652 0.79513 0.92740 0.90111 0.93803 0.93909 0.93772 0.94420 0.94812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.32 9.12 37.16 0.34 -0.98 16 2 C 0.09 0.85 5.56 -4.04 -0.02 0.83 16 3 N -0.60 -8.02 2.57 -164.86 -0.42 -8.45 16 4 C 0.57 8.43 6.58 -12.43 -0.08 8.34 16 5 O -0.50 -9.64 13.07 5.30 0.07 -9.57 16 6 C -0.27 -3.29 5.11 -104.70 -0.54 -3.83 16 7 C 0.20 2.09 8.71 -16.79 -0.15 1.94 16 8 N -0.57 -6.15 9.19 -14.39 -0.13 -6.29 16 9 C 0.51 6.16 8.48 -91.00 -0.77 5.39 16 10 O -0.29 -3.11 10.55 -17.59 -0.19 -3.29 16 11 C 0.04 0.28 10.35 101.05 1.05 1.32 16 12 N -0.52 -6.84 10.45 -14.39 -0.15 -6.99 16 13 C 0.24 2.95 11.00 -16.79 -0.18 2.77 16 14 C 0.13 2.26 3.54 -65.78 -0.23 2.03 16 15 H 0.09 1.48 7.97 -51.93 -0.41 1.07 16 16 C -0.16 -3.05 6.30 -24.89 -0.16 -3.21 16 17 C 0.19 4.65 5.37 -3.06 -0.02 4.63 16 18 N -0.60 -15.84 3.40 -170.04 -0.58 -16.42 16 19 C -0.23 -6.44 10.28 -15.06 -0.15 -6.59 16 20 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 21 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 22 N -0.92 -27.68 10.31 55.49 0.57 -27.11 16 23 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 C 0.13 2.76 6.61 -2.51 -0.02 2.74 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.47 6.38 -51.93 -0.33 0.14 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 32 H 0.08 0.63 5.08 -51.93 -0.26 0.36 16 33 H 0.19 1.50 3.74 -52.49 -0.20 1.31 16 34 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 36 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 37 H 0.19 2.04 8.06 -52.49 -0.42 1.62 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.08 1.68 5.78 -51.93 -0.30 1.37 16 40 H 0.04 1.19 7.38 -51.93 -0.38 0.80 16 41 H 0.04 1.22 7.50 -51.93 -0.39 0.83 16 42 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.04 0.87 6.00 -51.93 -0.31 0.56 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 351.92 15.07 5.30 5.30 Total: -1.00 -34.81 351.92 -7.51 -42.32 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -5.93 Total: -2.06 kcal Atomic # 6 Polarization: 16.07 SS G_CDS: -1.03 Total: 15.04 kcal Atomic # 7 Polarization: -64.53 SS G_CDS: -0.71 Total: -65.24 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -0.12 Total: -12.87 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.81 -7.51 -42.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034004230.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.843 kcal (2) G-P(sol) polarization free energy of solvation -34.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds