Wall clock time and date at job start Tue Mar 31 2020 13:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46497 * 109.47415 * 2 1 4 4 C 1.34775 * 120.00179 * 268.94110 * 3 2 1 5 5 O 1.21612 * 119.99612 * 187.52030 * 4 3 2 6 6 C 1.47385 * 120.00003 * 7.51648 * 4 3 2 7 7 C 1.38207 * 126.46616 * 7.77520 * 6 4 3 8 8 N 1.34262 * 108.40121 * 179.86849 * 7 6 4 9 9 H 0.96999 * 125.39444 * 180.17907 * 8 7 6 10 10 C 1.37779 * 109.21034 * 0.40493 * 8 7 6 11 11 C 1.46817 * 125.84450 * 179.72871 * 10 8 7 12 12 N 1.34769 * 120.00308 * 0.02681 * 11 10 8 13 13 O 1.21683 * 119.99491 * 180.02562 * 11 10 8 14 14 C 1.36346 * 108.30510 * 359.74754 * 10 8 7 15 15 C 1.46503 * 119.99565 * 88.93172 * 3 2 1 16 16 H 1.08994 * 110.78111 * 9.77630 * 15 3 2 17 17 C 1.55161 * 110.72254 * 246.53325 * 15 3 2 18 18 C 1.54902 * 101.58320 * 277.14505 * 17 15 3 19 19 N 1.47429 * 104.83390 * 322.98759 * 18 17 15 20 20 C 1.36931 * 125.64933 * 204.16611 * 19 18 17 21 21 H 1.08008 * 119.99753 * 179.97438 * 20 19 18 22 22 C 1.38817 * 120.00244 * 359.95942 * 20 19 18 23 23 N 1.31618 * 119.99670 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99916 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47517 * 59.99977 * 24 22 20 26 26 H 1.48505 * 109.46914 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47251 * 299.99941 * 24 22 20 28 28 C 1.47018 * 108.70055 * 24.13010 * 19 18 17 29 29 H 1.09008 * 109.47461 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47258 * 299.99727 * 1 2 3 31 31 H 1.09001 * 109.47475 * 60.00190 * 1 2 3 32 32 H 1.09000 * 109.47258 * 240.00273 * 2 1 3 33 33 H 1.09000 * 109.47364 * 120.00589 * 2 1 3 34 34 H 1.08003 * 125.79647 * 0.02562 * 7 6 4 35 35 H 0.97007 * 120.00027 * 359.97438 * 12 11 10 36 36 H 0.97002 * 120.00137 * 180.02562 * 12 11 10 37 37 H 1.08001 * 126.49758 * 179.97438 * 14 10 8 38 38 H 1.08999 * 110.99923 * 159.06539 * 17 15 3 39 39 H 1.08998 * 111.03434 * 35.23266 * 17 15 3 40 40 H 1.09006 * 110.36811 * 204.15600 * 18 17 15 41 41 H 1.08999 * 110.46731 * 81.87327 * 18 17 15 42 42 H 0.97005 * 119.99714 * 180.02562 * 23 22 20 43 43 H 1.09005 * 109.88455 * 118.35839 * 28 19 18 44 44 H 1.09003 * 109.88724 * 239.52222 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2633 2.0093 -1.1670 5 8 2.7962 3.1025 -1.1688 6 6 1.8856 1.3714 -2.4408 7 6 1.1459 0.2138 -2.5921 8 7 1.0145 -0.0367 -3.9046 9 1 0.5372 -0.7891 -4.2879 10 6 1.6693 0.9415 -4.6206 11 6 1.7623 1.0193 -6.0837 12 7 1.1735 0.0777 -6.8474 13 8 2.3709 1.9339 -6.6069 14 6 2.2166 1.8246 -3.7376 15 6 2.2402 2.0796 1.2686 16 1 2.1631 1.3894 2.1086 17 6 1.2405 3.2551 1.4303 18 6 1.9396 4.3722 0.6162 19 7 3.3782 4.1879 0.8806 20 6 4.3386 5.1589 0.7818 21 1 5.3700 4.9223 0.9981 22 6 3.9867 6.4473 0.4034 23 7 2.7298 6.7357 0.1401 24 14 5.2968 7.7720 0.2694 25 1 6.3099 7.3664 -0.7379 26 1 4.6673 9.0502 -0.1495 27 1 5.9550 7.9526 1.5882 28 6 3.6107 2.7891 1.2688 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.7402 -0.3860 -1.7907 35 1 0.6886 -0.6516 -6.4303 36 1 1.2352 0.1290 -7.8141 37 1 2.7941 2.7036 -3.9828 38 1 1.1386 3.5400 2.4775 39 1 0.2708 3.0061 0.9993 40 1 1.6133 5.3536 0.9608 41 1 1.7315 4.2559 -0.4473 42 1 2.4840 7.6359 -0.1247 43 1 4.2759 2.3105 0.5500 44 1 4.0488 2.7489 2.2661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034042514.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:53 Heat of formation + Delta-G solvation = 67.564070 kcal Electronic energy + Delta-G solvation = -28259.072566 eV Core-core repulsion = 24408.804911 eV Total energy + Delta-G solvation = -3850.267655 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.72153 -39.71044 -38.83679 -36.02188 -35.59433 -34.02526 -32.31992 -31.19226 -30.30713 -29.34457 -28.72502 -26.91316 -24.36881 -23.68335 -23.26596 -22.33875 -20.45957 -20.18790 -19.80972 -19.20826 -17.79296 -17.07155 -16.75700 -16.47188 -15.96656 -15.41779 -15.07361 -14.88930 -14.39965 -14.30959 -13.90037 -13.71806 -13.57993 -13.25471 -12.97071 -12.92055 -12.62723 -11.92321 -11.90739 -11.84923 -11.57596 -11.32354 -11.14032 -10.78203 -10.62557 -10.59019 -10.43576 -10.05578 -9.90084 -9.84382 -9.52222 -9.26795 -8.98336 -8.83939 -8.40254 -8.31205 -7.68051 -6.34416 -5.28870 -2.64978 1.31295 2.09286 2.81631 3.16638 3.21466 3.51114 3.60578 3.64916 3.66257 4.04895 4.67203 4.69348 4.78350 4.85362 5.00867 5.12715 5.16292 5.33784 5.51611 5.56146 5.68215 5.71992 5.80991 5.86535 5.92976 6.03249 6.14064 6.19369 6.36608 6.44739 6.50389 6.65443 6.72942 6.75923 6.90757 6.96983 6.98709 7.15414 7.38343 7.89873 7.97575 8.03344 8.11970 8.25254 8.73296 9.12580 9.59208 10.21167 10.88626 11.74491 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012562 B = 0.004506 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.352020 B = 6211.858086 C = 7983.148408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.093 3.907 3 N -0.608 5.608 4 C 0.541 3.459 5 O -0.437 6.437 6 C -0.209 4.209 7 C 0.032 3.968 8 N -0.533 5.533 9 H 0.414 0.586 10 C -0.080 4.080 11 C 0.595 3.405 12 N -0.859 5.859 13 O -0.525 6.525 14 C -0.037 4.037 15 C 0.139 3.861 16 H 0.081 0.919 17 C -0.159 4.159 18 C 0.153 3.847 19 N -0.577 5.577 20 C -0.202 4.202 21 H 0.069 0.931 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.907 3.093 25 H -0.289 1.289 26 H -0.293 1.293 27 H -0.289 1.289 28 C 0.139 3.861 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.206 0.794 35 H 0.393 0.607 36 H 0.406 0.594 37 H 0.158 0.842 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.091 0.909 41 H 0.047 0.953 42 H 0.246 0.754 43 H 0.021 0.979 44 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.063 -23.342 -6.018 26.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.031 4.031 3 N -0.345 5.345 4 C 0.328 3.672 5 O -0.307 6.307 6 C -0.219 4.219 7 C -0.107 4.107 8 N -0.129 5.129 9 H 0.251 0.749 10 C -0.190 4.190 11 C 0.381 3.619 12 N -0.423 5.423 13 O -0.401 6.401 14 C -0.063 4.063 15 C 0.035 3.965 16 H 0.099 0.901 17 C -0.199 4.199 18 C 0.029 3.971 19 N -0.302 5.302 20 C -0.331 4.331 21 H 0.087 0.913 22 C -0.208 4.208 23 N -0.570 5.570 24 Si 0.739 3.261 25 H -0.216 1.216 26 H -0.219 1.219 27 H -0.216 1.216 28 C 0.011 3.989 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.222 0.778 35 H 0.221 0.779 36 H 0.238 0.762 37 H 0.176 0.824 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.109 0.891 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.038 0.962 44 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -9.326 -21.877 -6.388 24.625 hybrid contribution 0.063 -0.313 -0.518 0.608 sum -9.263 -22.190 -6.906 25.018 Atomic orbital electron populations 1.22531 0.96789 1.01761 1.03745 1.21897 0.93750 0.84350 1.03082 1.47635 1.68184 1.12919 1.05740 1.17448 0.81950 0.85670 0.82148 1.91203 1.36623 1.17188 1.85638 1.20036 1.08445 0.98700 0.94728 1.24045 1.01858 0.99373 0.85438 1.41750 1.42215 1.22400 1.06584 0.74892 1.19921 1.10933 0.96821 0.91323 1.17087 0.78219 0.81678 0.84873 1.43701 1.58394 1.29281 1.10945 1.90927 1.42091 1.33725 1.73317 1.21229 0.97223 0.97998 0.89868 1.22035 0.97398 0.93438 0.83591 0.90101 1.23534 0.97301 0.97943 1.01103 1.22226 0.82498 0.95930 0.96480 1.44139 1.04223 1.03050 1.78794 1.18925 0.88437 0.88196 1.37587 0.91297 1.24649 0.96239 0.97305 1.02627 1.69826 1.14664 1.18764 1.53743 0.86257 0.80802 0.81584 0.77503 1.21583 1.21873 1.21631 1.21399 0.93112 0.87947 0.96421 0.91852 0.91296 0.91488 0.89779 0.90632 0.77754 0.77926 0.76221 0.82391 0.91950 0.92698 0.89123 0.93571 0.94321 0.96156 0.96420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.49 8.79 37.15 0.33 -1.16 16 2 C 0.09 0.91 5.58 -4.05 -0.02 0.89 16 3 N -0.61 -9.53 2.50 -165.30 -0.41 -9.94 16 4 C 0.54 10.38 6.78 -12.54 -0.08 10.29 16 5 O -0.44 -11.07 10.30 5.27 0.05 -11.02 16 6 C -0.21 -3.23 5.94 -105.02 -0.62 -3.86 16 7 C 0.03 0.31 8.59 -16.50 -0.14 0.17 16 8 N -0.53 -4.24 5.91 -9.30 -0.05 -4.29 16 9 H 0.41 1.33 8.14 -40.82 -0.33 1.00 16 10 C -0.08 -0.99 6.99 -82.41 -0.58 -1.57 16 11 C 0.59 7.32 8.06 -12.80 -0.10 7.22 16 12 N -0.86 -5.61 8.87 30.29 0.27 -5.34 16 13 O -0.53 -9.05 17.69 5.20 0.09 -8.96 16 14 C -0.04 -0.61 10.38 -39.10 -0.41 -1.01 16 15 C 0.14 2.47 3.71 -66.09 -0.25 2.22 16 16 H 0.08 1.16 7.85 -51.93 -0.41 0.75 16 17 C -0.16 -3.18 6.65 -24.58 -0.16 -3.35 16 18 C 0.15 4.05 4.89 -2.53 -0.01 4.04 16 19 N -0.58 -16.03 2.30 -170.07 -0.39 -16.42 16 20 C -0.20 -6.17 10.27 -15.06 -0.15 -6.32 16 21 H 0.07 2.05 7.83 -52.48 -0.41 1.63 16 22 C -0.01 -0.41 5.49 -17.43 -0.10 -0.51 16 23 N -0.92 -29.21 10.09 55.49 0.56 -28.65 16 24 Si 0.91 24.11 29.55 -169.99 -5.02 19.09 16 25 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 26 H -0.29 -7.80 7.11 56.52 0.40 -7.39 16 27 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 28 C 0.14 3.14 6.01 -3.06 -0.02 3.12 16 29 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.58 6.21 -51.93 -0.32 0.26 16 32 H 0.08 0.70 4.88 -51.93 -0.25 0.45 16 33 H 0.08 0.63 7.92 -51.93 -0.41 0.22 16 34 H 0.21 1.38 3.09 -52.48 -0.16 1.22 16 35 H 0.39 1.12 7.91 -40.82 -0.32 0.80 16 36 H 0.41 2.19 8.93 -40.82 -0.36 1.82 16 37 H 0.16 3.02 8.06 -52.49 -0.42 2.59 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.09 2.72 5.87 -51.93 -0.30 2.41 16 41 H 0.05 1.36 5.18 -53.26 -0.28 1.09 16 42 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 43 H 0.02 0.50 7.42 -51.93 -0.39 0.11 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 344.97 15.07 5.20 5.20 Total: -1.00 -41.20 344.97 -7.66 -48.86 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -5.62 Total: 1.31 kcal Atomic # 6 Polarization: 12.49 SS G_CDS: -2.32 Total: 10.17 kcal Atomic # 7 Polarization: -64.62 SS G_CDS: -0.03 Total: -64.65 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: 0.15 Total: -19.98 kcal Atomic # 14 Polarization: 24.11 SS G_CDS: -5.02 Total: 19.09 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -41.20 -7.66 -48.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034042514.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.422 kcal (2) G-P(sol) polarization free energy of solvation -41.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds